HHsearch alignment for GI: 254781149 and conserved domain: PRK05595
>PRK05595 replicative DNA helicase; Provisional.
Probab=100.00 E-value=0 Score=395.74 Aligned_cols=240 Identities=24% Similarity=0.347 Sum_probs=211.6
Q ss_pred HHHHHHHHC---CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 898986300---57785689999984067636899999999999999999999999999985114442345458999999
Q gi|254781149|r 4 EIISHFESQ---TKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPTCNTATLIRKSMQSF 80 (266)
Q Consensus 4 ~~~~~le~~---~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l 80 (266)
T Consensus 67 tv~~~L~~~~~l~~iGg~~yL~~L~~~~~s-~an~~~ya~iV~e~~~~R~li~~~~~i~~~a~~~~~~~~~~l~~ae~~l 145 (444)
T PRK05595 67 TLTENLKSTDKLEAVGGVTYITELSNSVVS-TANIQSYIKIVKDKSTLRKLIKSSTEIIENCYNNQDNVEKVIDSAEKKI 145 (444)
T ss_pred HHHHHHHHCCCCHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 999999756981211649999999862886-7999999999999999999999999999873267667999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 999965443104665543011689999999999986-3036667851113777776553016836887068741488999
Q gi|254781149|r 81 EDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQ-KKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFA 159 (266)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~a 159 (266)
T Consensus 146 ~~i~~~~-------~~~~~~~~~d~l~~~~~~ie~~~~~~~~~~Gi~TGf~~LD~~t~Gl~~GdLiiiaaRP~mGKTa~a 218 (444)
T PRK05595 146 FDISEKR-------TSSDFEPLSNVLERGFEQIENLFNNKGETTGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFA 218 (444)
T ss_pred HHHHHCC-------CCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHH
T ss_conf 9987425-------667855599999999999999970899967765884769987459985777999857989807999
Q ss_pred HHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 99999963-02232364116753489999999963022323478555017889989999999999999729954747998
Q gi|254781149|r 160 LSTALHMA-MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPS 238 (266)
Q Consensus 160 lnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~ 238 (266)
T Consensus 219 lnia~~~a~~~g~~V~~fSlEMs~~ql~~R~ls~~-----s~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~ 293 (444)
T PRK05595 219 LNIAEYAALREGKSVVIFSLEMSKEQLAYKLLCSE-----ANVDMLRLRTGNLEDKDWENIARASGPLAAAKIYIDDTAG 293 (444)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999866993799958899999999999964-----6988442326897999999999999998548970548999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 898999999999999947
Q gi|254781149|r 239 PGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 239 ~ti~~ira~aR~~k~k~~ 256 (266)
T Consensus 294 ~ti~~i~~~~r~~~~~~~ 311 (444)
T PRK05595 294 VSVMEMRSKCRRLKIEHG 311 (444)
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 648999999999998739