HHsearch alignment for GI: 254781149 and conserved domain: PRK05636
>PRK05636 replicative DNA helicase; Provisional.
Probab=100.00 E-value=0 Score=407.55 Aligned_cols=240 Identities=19% Similarity=0.301 Sum_probs=211.6
Q ss_pred HHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHH
Q ss_conf 89898630---05778568999998406763689999999999999999999999999998511--44423454589999
Q gi|254781149|r 4 EIISHFES---QTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSD--PTCNTATLIRKSMQ 78 (266)
Q Consensus 4 ~~~~~le~---~~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~--~~~~~~~~~~~~e~ 78 (266)
T Consensus 131 TV~~~L~~~g~Le~iGG~~YL~~L~~~~pS-~ani~~YA~iVkeks~~R~LI~~a~~i~~la~~~~~~~di~~~ld~ae~ 209 (507)
T PRK05636 131 IVSGRLDRTNDLERVGGAAYLHSLIQSVPT-AANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEGDEGAEVDAVIDRAQQ 209 (507)
T ss_pred HHHHHHHHCCCHHHCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 999998646983531839999999971897-8889999999999999999999999999987437877789999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Q ss_conf 9999996544310466554301168999999999998630-366678511137777765530168368870687414889
Q gi|254781149|r 79 SFEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKK-EGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTT 157 (266)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa 157 (266)
T Consensus 210 ~l~~i~~~-------~~~~~~~~~~d~l~~~~~~ie~~~~~~g~~~Gi~TGf~~LD~~t~Gl~~G~LiIiAARPsmGKTa 282 (507)
T PRK05636 210 EVFAVSQK-------NQSEDYAVLADILDETMAEIEMLESDGGIATGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKST 282 (507)
T ss_pred HHHHHHCC-------CCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHCCCCCCCEEEEEECCCCCHHH
T ss_conf 99998603-------77888556999999999999999857999525658808899755088835679997378786689
Q ss_pred HHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf 9999999963-022323641167534899999999630223234785550178899899999999999997299547479
Q gi|254781149|r 158 FALSTALHMA-MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDR 236 (266)
Q Consensus 158 ~alnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~ 236 (266)
T Consensus 283 lAlnia~n~A~~~g~~v~~fSLEMs~~ql~~Rlla~~-----s~V~~~~ir~g~l~~~~~~~l~~a~~~l~~~pl~IdD~ 357 (507)
T PRK05636 283 IALDFMRSASIKNNKASVIFSLEMSKSEIVMRLLSAE-----AEVRLADMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDS 357 (507)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECC
T ss_conf 9999999999876993799715699899999999984-----79887888558878899999999999986198899849
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 98898999999999999947
Q gi|254781149|r 237 PSPGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 237 ~~~ti~~ira~aR~~k~k~~ 256 (266)
T Consensus 358 ~~lti~~Ira~aRrlk~~~~ 377 (507)
T PRK05636 358 ANLTMMEIRSKARRLKQKHD 377 (507)
T ss_pred CCCCHHHHHHHHHHHHHHCC
T ss_conf 99769999999999986179