HHsearch alignment for GI: 254781149 and conserved domain: PRK06936
>PRK06936 type III secretion system ATPase; Provisional.
Probab=90.43 E-value=0.16 Score=30.76 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 851113777776553016836887068741488999999999630
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM 168 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~ 168 (266)
T Consensus 145 pl~TGIraID~llt-~g~GQR~gIfagsGvGKs~Ll~~i~r~~~a 188 (439)
T PRK06936 145 PLSLGVRVIDGLLT-CGEGQRMGIFAAAGGGKSTLLASLIRSAEV 188 (439)
T ss_pred CCCCCCEEEECCCC-HHCCCEEECCCCCCCCHHHHHHHHHHHHCC
T ss_conf 42268555524686-310570102369999889999999764326