HHsearch alignment for GI: 254781149 and conserved domain: PRK06995

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=96.02  E-value=0.06  Score=33.79  Aligned_cols=92  Identities=15%  Similarity=0.114  Sum_probs=61.9

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHH-CCC-CEEEECCCCCHHHHH--HHHHHHHHCCCCCCCCHHHCCCCCCCHHHH
Q ss_conf             6836887068741488999999999630-223-236411675348999--999996302232347855501788998999
Q gi|254781149|r  141 LRELILIGARPSMGKTTFALSTALHMAM-SGH-GVAFFSLEMDREKLG--ARALSNLLYPSSSRIPYLNLIRGEINQEQY  216 (266)
Q Consensus       141 ~g~LiviaaRP~mGKTa~alnia~~~a~-~g~-~Vl~fSlEMs~~ql~--~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~  216 (266)
T Consensus       175 ~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~I-----lgvPv~vv~----~~~--  243 (404)
T PRK06995        175 RGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKI-----LGVPVHAVK----DAA--  243 (404)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH-----CCCEEEEEC----CHH--
T ss_conf             475589866888763758999999999983898379997687547899999999987-----595599959----999--


Q ss_pred             HHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf             9999999999729954747998898999
Q gi|254781149|r  217 RISQGICEKLQDFPLIIDDRPSPGIMEF  244 (266)
Q Consensus       217 ~~i~~a~~~l~~~pl~IdD~~~~ti~~i  244 (266)
T Consensus       244 -eL~~aL~~l~~~dlILIDTaGrs~rD~  270 (404)
T PRK06995        244 -DLRLALAELRNKHIVLIDTVGMSQRDR  270 (404)
T ss_pred             -HHHHHHHHHCCCCEEEEECCCCCCCCH
T ss_conf             -999999970899999980999897688