HHsearch alignment for GI: 254781149 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=96.02 E-value=0.06 Score=33.79 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=61.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHH-CCC-CEEEECCCCCHHHHH--HHHHHHHHCCCCCCCCHHHCCCCCCCHHHH
Q ss_conf 6836887068741488999999999630-223-236411675348999--999996302232347855501788998999
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAM-SGH-GVAFFSLEMDREKLG--ARALSNLLYPSSSRIPYLNLIRGEINQEQY 216 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~-~g~-~Vl~fSlEMs~~ql~--~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~ 216 (266)
T Consensus 175 ~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~I-----lgvPv~vv~----~~~-- 243 (404)
T PRK06995 175 RGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKI-----LGVPVHAVK----DAA-- 243 (404)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH-----CCCEEEEEC----CHH--
T ss_conf 475589866888763758999999999983898379997687547899999999987-----595599959----999--
Q ss_pred HHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf 9999999999729954747998898999
Q gi|254781149|r 217 RISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 217 ~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
T Consensus 244 -eL~~aL~~l~~~dlILIDTaGrs~rD~ 270 (404)
T PRK06995 244 -DLRLALAELRNKHIVLIDTVGMSQRDR 270 (404)
T ss_pred -HHHHHHHHHCCCCEEEEECCCCCCCCH
T ss_conf -999999970899999980999897688