HHsearch alignment for GI: 254781149 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=95.04 E-value=0.2 Score=30.20 Aligned_cols=105 Identities=17% Similarity=0.290 Sum_probs=57.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHH-HH
Q ss_conf 68368870687414889999999996302232364116753489999999963022323478555017889989999-99
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYR-IS 219 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~-~i 219 (266)
T Consensus 44 ~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~-~~~~~l~~l~~~dll~iDDi~~i~g---~~~~ee~l 119 (235)
T PRK08084 44 HSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAW-FVPEVLEGMEQLSLVCIDNIECIAG---DELWEMAI 119 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHH-HHHHHHHHHHHCCEEEEECHHHHCC---CHHHHHHH
T ss_conf 9876999899998889999999999970798579987798665-1799998764189899827455469---97899999
Q ss_pred HHHHHHHHH---CCCEEE-CCC-C-C--CHHHHHHHHH
Q ss_conf 999999972---995474-799-8-8--9899999999
Q gi|254781149|r 220 QGICEKLQD---FPLIID-DRP-S-P--GIMEFVHVAN 249 (266)
Q Consensus 220 ~~a~~~l~~---~pl~Id-D~~-~-~--ti~~ira~aR 249 (266)
T Consensus 120 F~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~DL~SRl~ 157 (235)
T PRK08084 120 FDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLD 157 (235)
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHH
T ss_conf 99999999848966999679882430231288999995