HHsearch alignment for GI: 254781149 and conserved domain: PRK08939
>PRK08939 primosomal protein DnaI; Reviewed.
Probab=95.53 E-value=0.16 Score=30.84 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=61.9
Q ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCC-CCCCHHHCCC-------
Q ss_conf 53016836887068741488999999999630223236411675348999999996302232-3478555017-------
Q gi|254781149|r 137 GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSS-SRIPYLNLIR------- 208 (266)
Q Consensus 137 gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~-s~I~~~~l~~------- 208 (266)
T Consensus 154 ~~~~kG-l-yl~G~~G~GKTyL~~aian~La~~g~~v~~v~~----p~~~~~lK~s~~d~s~~~~i--~~~k~~~vLiLD 225 (306)
T PRK08939 154 GEKVKG-L-YLYGDFGVGKTYLLAAIANELAKKGVSSTLVHF----PEFIRELKNAISDGSVKEKI--DAVKEAPVLMLD 225 (306)
T ss_pred CCCCCE-E-EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH----HHHHHHHHHHHCCCCHHHHH--HHHHCCCEEEEE
T ss_conf 988877-8-898999998999999999999986992999875----99999999986489889999--998449989984
Q ss_pred --CCCCHHHHHH--HHHHH-H-HH-HHCCCEEECCCCCCHHHHHHHH
Q ss_conf --8899899999--99999-9-99-7299547479988989999999
Q gi|254781149|r 209 --GEINQEQYRI--SQGIC-E-KL-QDFPLIIDDRPSPGIMEFVHVA 248 (266)
Q Consensus 209 --g~l~~~e~~~--i~~a~-~-~l-~~~pl~IdD~~~~ti~~ira~a 248 (266)
T Consensus 226 DiGaE~~t~W~rd~vl~~IL~~Rm~~~lPTff--TSN~~~~eLe~~l 270 (306)
T PRK08939 226 DIGAEQMSSWVRDEVLGVILQYRMQEELPTFF--TSNFDFDELEHHL 270 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE--ECCCCHHHHHHHH
T ss_conf 44654267778998999999999974999799--7799999999998