HHsearch alignment for GI: 254781149 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=99.37 E-value=2.8e-12 Score=105.83 Aligned_cols=109 Identities=21% Similarity=0.253 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8511137777765-530168368870687414889999999996302232364116753489999999963022323478
Q gi|254781149|r 124 DIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIP 202 (266)
Q Consensus 124 Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~ 202 (266)
T Consensus 247 rv~tGi~~LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l~~~a~~~-------G~d 319 (501)
T PRK09302 247 RISSGVPDLDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQLVRNATSW-------GID 319 (501)
T ss_pred CCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHC-------CCC
T ss_conf 0047973278872599758946999889998889999999999986599089999967999999999973-------998
Q ss_pred HHHCC-----------CCCCCHH-HHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 55501-----------7889989-9999999999997299547479988
Q gi|254781149|r 203 YLNLI-----------RGEINQE-QYRISQGICEKLQDFPLIIDDRPSP 239 (266)
Q Consensus 203 ~~~l~-----------~g~l~~~-e~~~i~~a~~~l~~~pl~IdD~~~~ 239 (266)
T Consensus 320 l~~~~~~G~l~i~~~~p~~~~~~e~~~~i~~~v~~~~~~rVvIDsls~~ 368 (501)
T PRK09302 320 LEEMERKGLLKIICARPESTGLEDHLQIIKREIEEFKPSRVAVDPLSAL 368 (501)
T ss_pred HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 4888748947999837000598999999999999729989999580687