HHsearch alignment for GI: 254781149 and conserved domain: PRK12724

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=94.69  E-value=0.34  Score=28.57  Aligned_cols=87  Identities=17%  Similarity=0.283  Sum_probs=55.8

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHH-HCCCCEEEECCCCCH----HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHH
Q ss_conf             683688706874148899999999963-022323641167534----899999999630223234785550178899899
Q gi|254781149|r  141 LRELILIGARPSMGKTTFALSTALHMA-MSGHGVAFFSLEMDR----EKLGARALSNLLYPSSSRIPYLNLIRGEINQEQ  215 (266)
Q Consensus       141 ~g~LiviaaRP~mGKTa~alnia~~~a-~~g~~Vl~fSlEMs~----~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e  215 (266)
T Consensus       222 ~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQL--ktYa~I-----l~iPv~vv----~~~~e  290 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQL--KRYADT-----MGMPFYPV----KDIKK  290 (432)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH--HHHHHH-----HCCCEEEE----ECHHH
T ss_conf             76299998999988899999999999997499279995266537799999--999998-----59945995----18999


Q ss_pred             HHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf             999999999997299547479988989
Q gi|254781149|r  216 YRISQGICEKLQDFPLIIDDRPSPGIM  242 (266)
Q Consensus       216 ~~~i~~a~~~l~~~pl~IdD~~~~ti~  242 (266)
T Consensus       291 l~---~al~~-~~~DlILIDTAGrS~r  313 (432)
T PRK12724        291 FK---ETLAR-DGSELILIDTAGYSHR  313 (432)
T ss_pred             HH---HHHHH-CCCCEEEEECCCCCCC
T ss_conf             99---99985-6999999929998978