HHsearch alignment for GI: 254781149 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=94.69 E-value=0.34 Score=28.57 Aligned_cols=87 Identities=17% Similarity=0.283 Sum_probs=55.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHH-HCCCCEEEECCCCCH----HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 683688706874148899999999963-022323641167534----899999999630223234785550178899899
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMA-MSGHGVAFFSLEMDR----EKLGARALSNLLYPSSSRIPYLNLIRGEINQEQ 215 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a-~~g~~Vl~fSlEMs~----~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e 215 (266)
T Consensus 222 ~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQL--ktYa~I-----l~iPv~vv----~~~~e 290 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQL--KRYADT-----MGMPFYPV----KDIKK 290 (432)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH--HHHHHH-----HCCCEEEE----ECHHH
T ss_conf 76299998999988899999999999997499279995266537799999--999998-----59945995----18999
Q ss_pred HHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 999999999997299547479988989
Q gi|254781149|r 216 YRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 216 ~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
T Consensus 291 l~---~al~~-~~~DlILIDTAGrS~r 313 (432)
T PRK12724 291 FK---ETLAR-DGSELILIDTAGYSHR 313 (432)
T ss_pred HH---HHHHH-CCCCEEEEECCCCCCC
T ss_conf 99---99985-6999999929998978