HHsearch alignment for GI: 254781149 and conserved domain: PRK13409
>PRK13409 putative ATPase RIL; Provisional.
Probab=90.72 E-value=1.5 Score=24.10 Aligned_cols=115 Identities=19% Similarity=0.166 Sum_probs=68.2
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC-----CCEEEE------CCCCCHHHHHHHHHHHHHCC-----CCCCC
Q ss_conf 01683688706874148899999999963-022-----323641------16753489999999963022-----32347
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMA-MSG-----HGVAFF------SLEMDREKLGARALSNLLYP-----SSSRI 201 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g-----~~Vl~f------SlEMs~~ql~~R~ls~~t~~-----~~s~I 201 (266)
T Consensus 362 i~~GEiigIvG~NGaGKTTLlKiLaG~lkPd~G~V~~~~~isY~pQ~i~~d~~~tV~~~L~~~~~~~~~~~~~~ell~~L 441 (590)
T PRK13409 362 IRKGEVIGIVGPNGIGKTTFVKLLAGVLKPDEGEVDTDLKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL 441 (590)
T ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 60474899988888878999999828877887447547748733600146868819999986244225389999999887
Q ss_pred CHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCC--CHHHHHHHHHHHHH
Q ss_conf 855501---78899899999999999997299547479988--98999999999999
Q gi|254781149|r 202 PYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSP--GIMEFVHVANGLRN 253 (266)
Q Consensus 202 ~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~--ti~~ira~aR~~k~ 253 (266)
T Consensus 442 ~l~~lldk~v~~LSGGEkQRvaLA~~L~~~anvLLLDEPTn~LDvE~R~~~~k~i~~ 498 (590)
T PRK13409 442 NLEKLLDRNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAYLDVEQRLAVARAIRR 498 (590)
T ss_pred CCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 888676496244098999999999986679999999489887788999999999999