HHsearch alignment for GI: 254781149 and conserved domain: PRK13541
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional.
Probab=95.26 E-value=0.13 Score=31.48 Aligned_cols=108 Identities=14% Similarity=0.005 Sum_probs=67.5
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCC------C--------EE------EECCCCCHHHHHHHHHHHH
Q ss_conf 6553016836887068741488999999999630-223------2--------36------4116753489999999963
Q gi|254781149|r 135 LMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGH------G--------VA------FFSLEMDREKLGARALSNL 193 (266)
Q Consensus 135 ~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~------~--------Vl------~fSlEMs~~ql~~R~ls~~ 193 (266)
T Consensus 19 isl~i~~G~i~~i~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~~~~~~~~~~i~~~~~l~~~ltv~enl~-~~~~~ 97 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLK-FWSEI 97 (195)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHHCHHHCEEECCCCCCCCCCCHHHHHH-HHHHH
T ss_conf 77787799799999999981999999996798898408999999920324635366355346787776999999-99986
Q ss_pred HCC------CCCCCCHHHC---CCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 022------3234785550---1788998999999999999972995474799889899
Q gi|254781149|r 194 LYP------SSSRIPYLNL---IRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 194 t~~------~~s~I~~~~l---~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
T Consensus 98 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrv~iAral~~~p~llllDEPt~~LD~ 156 (195)
T PRK13541 98 YNSVETLYAAIHYFKLHDLLDEKCYSLSSGMQKVVALARLIACQSDLWLLDEVETNLSK 156 (195)
T ss_pred CCHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 28399999999984987566486645999999999999999709999999787655999