HHsearch alignment for GI: 254781149 and conserved domain: TIGR02236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.31 E-value=0.087 Score=32.68 Aligned_cols=110 Identities=18% Similarity=0.264 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH------------C---CC-CEEEECCCCC-HHHH
Q ss_conf 8511137777765-53016836887068741488999999999630------------2---23-2364116753-4899
Q gi|254781149|r 124 DIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAM------------S---GH-GVAFFSLEMD-REKL 185 (266)
Q Consensus 124 Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~------------~---g~-~Vl~fSlEMs-~~ql 185 (266)
T Consensus 77 kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnVQlP~flfydeeave~GGL~gp~av~IDTEnTFRPE- 155 (333)
T TIGR02236 77 KITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEFLFYDEEAVEKGGLEGPKAVYIDTENTFRPE- 155 (333)
T ss_pred EEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCEEEEEECCCCCCHH-
T ss_conf 0444863676560796000058887710078657876676553228711210110001477678768998559798625-
Q ss_pred HHHHHHHHHCCCCC------CCCHHHCC------CCCCCHHHH---HHHHHHHHHHHH--CC--CEEECC
Q ss_conf 99999963022323------47855501------788998999---999999999972--99--547479
Q gi|254781149|r 186 GARALSNLLYPSSS------RIPYLNLI------RGEINQEQY---RISQGICEKLQD--FP--LIIDDR 236 (266)
Q Consensus 186 ~~R~ls~~t~~~~s------~I~~~~l~------~g~l~~~e~---~~i~~a~~~l~~--~p--l~IdD~ 236 (266)
T Consensus 156 --RI~qmA~GL~~g~l~~~melD~~evL~nI~vARAyNS~HQmllve~~~~li~e~~~~~~pv~L~~VDS 223 (333)
T TIGR02236 156 --RIEQMAKGLARGTLQAAMELDPDEVLKNIYVARAYNSNHQMLLVEKAKELIKELKNEDKPVRLLIVDS 223 (333)
T ss_pred --HHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf --79999986311136665327877772030477852631479999999999973015799468999812