HHsearch alignment for GI: 254781149 and conserved domain: TIGR03015
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.33 E-value=0.28 Score=29.10 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=66.5
Q ss_pred HHHHHHHHHHCCCC-EEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCC
Q ss_conf 77777655301683-6887068741488999999999630223-236411675348999999996302232347855501
Q gi|254781149|r 130 QSVDHLMGGVQLRE-LILIGARPSMGKTTFALSTALHMAMSGH-GVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLI 207 (266)
Q Consensus 130 ~~LD~~~gG~~~g~-LiviaaRP~mGKTa~alnia~~~a~~g~-~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~ 207 (266)
T Consensus 30 ~al~~L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~l------g~~~~~-- 101 (269)
T TIGR03015 30 RAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADF------GLETEG-- 101 (269)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHC------CCCCCC--
T ss_conf 999999999964896599972998988999999998459345489997699999999999999985------989889--
Q ss_pred CCCCCHHHHHHHHHHHHHHHH---CC-CEEECCCCCCHHHHHHHHHHH
Q ss_conf 788998999999999999972---99-547479988989999999999
Q gi|254781149|r 208 RGEINQEQYRISQGICEKLQD---FP-LIIDDRPSPGIMEFVHVANGL 251 (266)
Q Consensus 208 ~g~l~~~e~~~i~~a~~~l~~---~p-l~IdD~~~~ti~~ira~aR~~ 251 (266)
T Consensus 102 --~~~~~~~~~l~~~L~~~~~~g~~~vliIDEAq~L~~~~Le~-Lr~L 146 (269)
T TIGR03015 102 --RDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEE-LRML 146 (269)
T ss_pred --CCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHH-HHHH
T ss_conf --89999999999999999966994699972422199999999-9999