HHsearch alignment for GI: 254781149 and conserved domain: TIGR03269
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=94.38 E-value=0.49 Score=27.44 Aligned_cols=113 Identities=16% Similarity=0.075 Sum_probs=64.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCCC-------------------------CEEEEC------
Q ss_conf 77777655301683688706874148899999999963-0223-------------------------236411------
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSGH-------------------------GVAFFS------ 177 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g~-------------------------~Vl~fS------ 177 (266)
T Consensus 298 ~al~~vs~~v~~GEi~gi~G~nGsGKsTL~k~l~Gl~~p~~G~V~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 377 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY 377 (520)
T ss_pred EEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCC
T ss_conf 46512068972896899987888878999999948878987479997387444366758667787625514994665457
Q ss_pred CCCCHHHHHHHHHHHHHC-----------CCCCCCCHHH---C--C-CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 675348999999996302-----------2323478555---0--1-788998999999999999972995474799889
Q gi|254781149|r 178 LEMDREKLGARALSNLLY-----------PSSSRIPYLN---L--I-RGEINQEQYRISQGICEKLQDFPLIIDDRPSPG 240 (266)
Q Consensus 178 lEMs~~ql~~R~ls~~t~-----------~~~s~I~~~~---l--~-~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~t 240 (266)
T Consensus 378 p~~tv~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~r~p~~LSGGq~QRvaiAraL~~~P~vlilDEPT~g 457 (520)
T TIGR03269 378 PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGT 457 (520)
T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 67889999999986357668999999999997599766777765479211899999999999999979898999386011
Q ss_pred HH
Q ss_conf 89
Q gi|254781149|r 241 IM 242 (266)
Q Consensus 241 i~ 242 (266)
T Consensus 458 lD 459 (520)
T TIGR03269 458 MD 459 (520)
T ss_pred HH
T ss_conf 33