HHsearch alignment for GI: 254781149 and conserved domain: TIGR03324
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.65 E-value=0.12 Score=31.64 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCH
Q ss_conf 785111377777655301683688706874148899999999963022323641167534
Q gi|254781149|r 123 PDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDR 182 (266)
Q Consensus 123 ~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~ 182 (266)
T Consensus 144 epL~TGIkaID~liP-IGrGQRelIigdrgtGKTtla~dtIinqk~~~vicVyvaIGqr~ 202 (497)
T TIGR03324 144 VPLQTGLKVIDALIP-IGRGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRA 202 (497)
T ss_pred CCCCCCHHHHHCCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEH
T ss_conf 710024145542465-56774677645888880088999997045667189999732507