HHsearch alignment for GI: 254781149 and conserved domain: TIGR03346

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.72  E-value=0.066  Score=33.52  Aligned_cols=79  Identities=13%  Similarity=0.167  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC-----CEEEEC
Q ss_conf             99999999998630366678511137777765530--16836887068741488999999999630223-----236411
Q gi|254781149|r  105 AATTAMKSAEQQKKEGENPDIKWGLQSVDHLMGGV--QLRELILIGARPSMGKTTFALSTALHMAMSGH-----GVAFFS  177 (266)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gG~--~~g~LiviaaRP~mGKTa~alnia~~~a~~g~-----~Vl~fS  177 (266)
T Consensus       155 ~L~~y~~dLT~~A~~gklDpviGRd~Ei~r~i~IL~Rr~KNNpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~  234 (852)
T TIGR03346       155 ALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA  234 (852)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEE
T ss_conf             89999888999998289997738369999999999873248972127999879999999999986699997885185127


Q ss_pred             CCCCHH
Q ss_conf             675348
Q gi|254781149|r  178 LEMDRE  183 (266)
Q Consensus       178 lEMs~~  183 (266)
T Consensus       235 LDlg~L  240 (852)
T TIGR03346       235 LDMGAL  240 (852)
T ss_pred             EEHHHH
T ss_conf             528877