HHsearch alignment for GI: 254781149 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.72 E-value=0.066 Score=33.52 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC-----CEEEEC
Q ss_conf 99999999998630366678511137777765530--16836887068741488999999999630223-----236411
Q gi|254781149|r 105 AATTAMKSAEQQKKEGENPDIKWGLQSVDHLMGGV--QLRELILIGARPSMGKTTFALSTALHMAMSGH-----GVAFFS 177 (266)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gG~--~~g~LiviaaRP~mGKTa~alnia~~~a~~g~-----~Vl~fS 177 (266)
T Consensus 155 ~L~~y~~dLT~~A~~gklDpviGRd~Ei~r~i~IL~Rr~KNNpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~ 234 (852)
T TIGR03346 155 ALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEE
T ss_conf 89999888999998289997738369999999999873248972127999879999999999986699997885185127
Q ss_pred CCCCHH
Q ss_conf 675348
Q gi|254781149|r 178 LEMDRE 183 (266)
Q Consensus 178 lEMs~~ 183 (266)
T Consensus 235 LDlg~L 240 (852)
T TIGR03346 235 LDMGAL 240 (852)
T ss_pred EEHHHH
T ss_conf 528877