HHsearch alignment for GI: 254781149 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.81 E-value=0.39 Score=28.12 Aligned_cols=51 Identities=12% Similarity=0.209 Sum_probs=36.1
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHH
Q ss_conf 7776553016836887068741488999999999630223236411675348
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDRE 183 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ 183 (266)
T Consensus 29 l~~~~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~ 79 (226)
T TIGR03420 29 LRQLAAGKGD-RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred HHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHH
T ss_conf 9987646688-86999899999889999999999862699579952999877