HHsearch alignment for GI: 254781149 and conserved domain: cd00267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.037 Score=35.23 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=68.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCH---HHHHHHHHHHHHCCCCCCCCHHHCC
Q ss_conf 7777655301683688706874148899999999963022323641167534---8999999996302232347855501
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDR---EKLGARALSNLLYPSSSRIPYLNLI 207 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~---~ql~~R~ls~~t~~~~s~I~~~~l~ 207 (266)
T Consensus 14 ~l~~i~~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~~~-i~--------~v------ 78 (157)
T cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRR-IG--------YV------ 78 (157)
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC-CC--------CC------
T ss_conf 7821178987997999987889998999999958847996289999999997999999940-60--------87------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf 7889989999999999999729954747998898999
Q gi|254781149|r 208 RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 208 ~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
T Consensus 79 -~QLSgGqkqrv~iA~al~~~p~ililDEPtsgLD~~ 114 (157)
T cd00267 79 -PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114 (157)
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf -668869999999999997099999996987668999