HHsearch alignment for GI: 254781149 and conserved domain: cd00983

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.52  E-value=2e-06  Score=64.96  Aligned_cols=130  Identities=23%  Similarity=0.191  Sum_probs=89.6

Q ss_pred             CCCCCCHHHHHHHHH--HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             678511137777765--530168368870687414889999999996302232364116753489999999963022323
Q gi|254781149|r  122 NPDIKWGLQSVDHLM--GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSS  199 (266)
Q Consensus       122 ~~Gi~TG~~~LD~~~--gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s  199 (266)
T Consensus        33 ~~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk~gg~~~~iDaE~a~d~~~---a~~l------  103 (325)
T cd00983          33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVY---AKKL------  103 (325)
T ss_pred             CCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHCCCHHH---HHHC------
T ss_conf             5346268199999975899668808999889877799999999999873598399996254259899---9980------


Q ss_pred             CCCHHHCCCCCCCHHHHHHHHHHHHHHHH---CCCEEECCCCCCH-----------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             47855501788998999999999999972---9954747998898-----------999999999999947999864
Q gi|254781149|r  200 RIPYLNLIRGEINQEQYRISQGICEKLQD---FPLIIDDRPSPGI-----------MEFVHVANGLRNKHTKMVQLY  262 (266)
Q Consensus       200 ~I~~~~l~~g~l~~~e~~~i~~a~~~l~~---~pl~IdD~~~~ti-----------~~ira~aR~~k~k~~~~~~~~  262 (266)
T Consensus       104 GVD~~~l~~~q--p~~~Eq~l~i~~~li~s~~~dliViDSvaal~p~~E~e~~~~d~~vg~~ArlmskalRklt~~l  178 (325)
T cd00983         104 GVDLDNLLISQ--PDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSI  178 (325)
T ss_pred             CCCHHHEEEEC--CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99846758966--6389999999999751588767998151123657887601132114389999999999999875