HHsearch alignment for GI: 254781149 and conserved domain: cd00983
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.52 E-value=2e-06 Score=64.96 Aligned_cols=130 Identities=23% Similarity=0.191 Sum_probs=89.6
Q ss_pred CCCCCCHHHHHHHHH--HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 678511137777765--530168368870687414889999999996302232364116753489999999963022323
Q gi|254781149|r 122 NPDIKWGLQSVDHLM--GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSS 199 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~--gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s 199 (266)
T Consensus 33 ~~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk~gg~~~~iDaE~a~d~~~---a~~l------ 103 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVY---AKKL------ 103 (325)
T ss_pred CCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHCCCHHH---HHHC------
T ss_conf 5346268199999975899668808999889877799999999999873598399996254259899---9980------
Q ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHHHHH---CCCEEECCCCCCH-----------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47855501788998999999999999972---9954747998898-----------999999999999947999864
Q gi|254781149|r 200 RIPYLNLIRGEINQEQYRISQGICEKLQD---FPLIIDDRPSPGI-----------MEFVHVANGLRNKHTKMVQLY 262 (266)
Q Consensus 200 ~I~~~~l~~g~l~~~e~~~i~~a~~~l~~---~pl~IdD~~~~ti-----------~~ira~aR~~k~k~~~~~~~~ 262 (266)
T Consensus 104 GVD~~~l~~~q--p~~~Eq~l~i~~~li~s~~~dliViDSvaal~p~~E~e~~~~d~~vg~~ArlmskalRklt~~l 178 (325)
T cd00983 104 GVDLDNLLISQ--PDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSI 178 (325)
T ss_pred CCCHHHEEEEC--CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99846758966--6389999999999751588767998151123657887601132114389999999999999875