HHsearch alignment for GI: 254781149 and conserved domain: cd00984
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.96 E-value=3.4e-28 Score=216.84 Aligned_cols=122 Identities=39% Similarity=0.587 Sum_probs=115.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC
Q ss_conf 777776553016836887068741488999999999630-2232364116753489999999963022323478555017
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIR 208 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~ 208 (266)
T Consensus 1 ~eLD~~~gG~~~G~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm~~~~~~~R~~s~~-----~~i~~~~i~~ 75 (242)
T cd00984 1 TDLDNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASE-----SGISLSKLRT 75 (242)
T ss_pred CCHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----HCCCHHHHHC
T ss_conf 95234316999981899996899999999999999999977995999933353889999999998-----2977455302
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 889989999999999999729954747998898999999999999947
Q gi|254781149|r 209 GEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 209 g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k~k~~ 256 (266)
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~t~~~i~~~ir~~~~~~~ 123 (242)
T cd00984 76 GSLSDEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHG 123 (242)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 652279999999999986169889966999999999999999988369