HHsearch alignment for GI: 254781149 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.96 E-value=3.5e-08 Score=77.32 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH------CCCCEEEECCCCC
Q ss_conf 511137777765-53016836887068741488999999999630------2232364116753
Q gi|254781149|r 125 IKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAM------SGHGVAFFSLEMD 181 (266)
Q Consensus 125 i~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~------~g~~Vl~fSlEMs 181 (266)
T Consensus 1 isTG~~~lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~ 64 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 9888578996507996478799999999984999999999998424753678962999953677