HHsearch alignment for GI: 254781149 and conserved domain: cd01132
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.54 E-value=0.043 Score=34.80 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf 8511137777765530168368870687414889999999996302232364116753489
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREK 184 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~q 184 (266)
T Consensus 52 ~l~TGI~aID~l~p-ig~GQr~~If~~~g~GKt~l~~~~i~~~~~~~~~~V~~~IGer~rE 111 (274)
T cd01132 52 PLQTGIKAIDAMIP-IGRGQRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKAST 111 (274)
T ss_pred CCCCCCEEEECCCC-CCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHH
T ss_conf 11038345413466-2478675155888755788999999974136965999973245226