HHsearch alignment for GI: 254781149 and conserved domain: cd01132

>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.54  E-value=0.043  Score=34.80  Aligned_cols=60  Identities=15%  Similarity=0.230  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf             8511137777765530168368870687414889999999996302232364116753489
Q gi|254781149|r  124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREK  184 (266)
Q Consensus       124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~q  184 (266)
T Consensus        52 ~l~TGI~aID~l~p-ig~GQr~~If~~~g~GKt~l~~~~i~~~~~~~~~~V~~~IGer~rE  111 (274)
T cd01132          52 PLQTGIKAIDAMIP-IGRGQRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKAST  111 (274)
T ss_pred             CCCCCCEEEECCCC-CCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHH
T ss_conf             11038345413466-2478675155888755788999999974136965999973245226