HHsearch alignment for GI: 254781149 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.76 E-value=3.2e-07 Score=70.62 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC------CCEEEECCCCCH-HHHHHHHH
Q ss_conf 511137777765-5301683688706874148899999999963022------323641167534-89999999
Q gi|254781149|r 125 IKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSG------HGVAFFSLEMDR-EKLGARAL 190 (266)
Q Consensus 125 i~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g------~~Vl~fSlEMs~-~ql~~R~l 190 (266)
T Consensus 1 isTG~~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~~i~ 74 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLA 74 (226)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 98874789988579988883999999999989999999999985422116999619999557753199999998