HHsearch alignment for GI: 254781149 and conserved domain: cd02030
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=91.65 E-value=0.48 Score=27.52 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=8.1
Q ss_pred CEEEECCCCCHHHHHHHHH
Q ss_conf 2364116753489999999
Q gi|254781149|r 172 GVAFFSLEMDREKLGARAL 190 (266)
Q Consensus 172 ~Vl~fSlEMs~~ql~~R~l 190 (266)
T Consensus 143 PdlvIYL~a~pe~~~~RI~ 161 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIK 161 (219)
T ss_pred CCEEEEEECCHHHHHHHHH
T ss_conf 9989998399999999999