HHsearch alignment for GI: 254781149 and conserved domain: cd02034
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.31 E-value=0.026 Score=36.30 Aligned_cols=45 Identities=31% Similarity=0.285 Sum_probs=38.1
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 88706874148899999999963022323641167534899999999
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALS 191 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls 191 (266)
T Consensus 2 ia~~GKGGvGKtt~~~~la~~l~~~g~~vl~iD~Dp~--dlpe~~~~ 46 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPD--DLPERLSV 46 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC--CCHHHHCE
T ss_conf 7898899774999999999999978996999989897--12355423