HHsearch alignment for GI: 254781149 and conserved domain: cd03111
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.61 E-value=0.055 Score=34.05 Aligned_cols=41 Identities=29% Similarity=0.484 Sum_probs=34.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEECCCCCHHH
Q ss_conf 68870687414889999999996302-232364116753489
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMS-GHGVAFFSLEMDREK 184 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~-g~~Vl~fSlEMs~~q 184 (266)
T Consensus 2 i~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqfGd 43 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD 43 (106)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 899728998668999999999999841993899965467799