HHsearch alignment for GI: 254781149 and conserved domain: cd03218
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.50 E-value=0.4 Score=28.06 Aligned_cols=121 Identities=14% Similarity=0.103 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC-------------CEEEEC------CCCC
Q ss_conf 13777776553016836887068741488999999999630-------223-------------236411------6753
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH-------------GVAFFS------LEMD 181 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~-------------~Vl~fS------lEMs 181 (266)
T Consensus 12 ~~~~l~~vs~~v~~Gei~~llGpNGAGKSTll~~i~Gl~~p~~G~I~~~g~di~~~~~~~r~r~gig~~pQ~~~l~~~lt 91 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCCC
T ss_conf 99988260679899959999999996199999999779999862999999999999999999719798777776788888
Q ss_pred HHH---------------HHHHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH---
Q ss_conf 489---------------9999999630223234785-550178899899999999999997299547479988989---
Q gi|254781149|r 182 REK---------------LGARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM--- 242 (266)
Q Consensus 182 ~~q---------------l~~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~--- 242 (266)
T Consensus 92 V~enl~~~~~~~~~~~~~~~~~~~~~l~~---~~L~~~~~~~~~~LSgG~~qrv~iAraL~~~P~illlDEPt~GLDp~~ 168 (232)
T cd03218 92 VEENILAVLEIRGLSKKEREEKLEELLEE---FHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA 168 (232)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHH
T ss_conf 99999999997299999999999999987---698246539425599999999999999966999999889856889999
Q ss_pred --HHHHHHHHH
Q ss_conf --999999999
Q gi|254781149|r 243 --EFVHVANGL 251 (266)
Q Consensus 243 --~ira~aR~~ 251 (266)
T Consensus 169 ~~~i~~~i~~l 179 (232)
T cd03218 169 VQDIQKIIKIL 179 (232)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999