HHsearch alignment for GI: 254781149 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=91.22 E-value=0.71 Score=26.33 Aligned_cols=122 Identities=23% Similarity=0.190 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C------CCC-------------EEE-E-----CCCCC
Q ss_conf 13777776553016836887068741488999999999630-2------232-------------364-1-----16753
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-S------GHG-------------VAF-F-----SLEMD 181 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~------g~~-------------Vl~-f-----SlEMs 181 (266)
T Consensus 12 ~~~aL~~vsl~i~~Gei~gliG~nGaGKSTL~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~gi~~v~Q~~~l~~~lt 91 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCCEEEECCCCCCCCCC
T ss_conf 99987233899889989999989997399999999679878831899999966889999999759767601410265543
Q ss_pred HHHH-------------------------HHHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 4899-------------------------999999630223234785-55017889989999999999999729954747
Q gi|254781149|r 182 REKL-------------------------GARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDD 235 (266)
Q Consensus 182 ~~ql-------------------------~~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD 235 (266)
T Consensus 92 v~enl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSGG~~Qrv~iAral~~~P~lliLD 168 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLE---RVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLD 168 (236)
T ss_pred HHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHH---HCCCCCHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 89989888876045430011023589999999999999---749980438862669999999999999996599999994
Q ss_pred CCCCCH-----HHHHHHHHHHH
Q ss_conf 998898-----99999999999
Q gi|254781149|r 236 RPSPGI-----MEFVHVANGLR 252 (266)
Q Consensus 236 ~~~~ti-----~~ira~aR~~k 252 (266)
T Consensus 169 EPT~gLD~~~~~~i~~~l~~l~ 190 (236)
T cd03219 169 EPAAGLNPEETEELAELIRELR 190 (236)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8765899999999999999999