HHsearch alignment for GI: 254781149 and conserved domain: cd03220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.43 E-value=0.23 Score=29.74 Aligned_cols=115 Identities=14% Similarity=-0.016 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-------HCCCCEE------EECCCCCHHHHHHHHHHHHH
Q ss_conf 1377777655301683688706874148899999999963-------0223236------41167534899999999630
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-------MSGHGVA------FFSLEMDREKLGARALSNLL 194 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-------~~g~~Vl------~fSlEMs~~ql~~R~ls~~t 194 (266)
T Consensus 34 ~~~AL~~isf~i~~GeivgilG~NGaGKSTLl~~i~Gl~~p~~G~I~i~G~~~~~~~~~~~~~p~ltv~enl-~~~~~~~ 112 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENI-YLNGRLL 112 (224)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCEECCCCCCHHHHH-HHHHHHC
T ss_conf 969876707898389899999799981999999997587778776999989843015742039988299999-9999982
Q ss_pred CCCCC-------------CCC-HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 22323-------------478-55501788998999999999999972995474799889899
Q gi|254781149|r 195 YPSSS-------------RIP-YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 195 ~~~~s-------------~I~-~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
T Consensus 113 g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqRl~iA~al~~~P~illLDEPt~gLD~ 175 (224)
T cd03220 113 GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 965899999999999863675565386654699999999999999669999999188665699