HHsearch alignment for GI: 254781149 and conserved domain: cd03222

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.11  E-value=0.095  Score=32.42  Aligned_cols=104  Identities=16%  Similarity=0.083  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC
Q ss_conf             37777765530168368870687414889999999996302232364116753489999999963022323478555017
Q gi|254781149|r  129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIR  208 (266)
Q Consensus       129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~  208 (266)
T Consensus        13 ~~~l~~~~-~v~~GEiv~ilGpNGaGKSTllk~i~G~l~p~~G~i~~~g~------------------~~~~~p----q~   69 (177)
T cd03222          13 FFLLVELG-VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------------TPVYKP----QY   69 (177)
T ss_pred             EEEECCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCC------------------CEECCC----CC
T ss_conf             89865899-55899899998999999999999996886788994666686------------------122155----51


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHHHHHH
Q ss_conf             8899899999999999997299547479988989-----9999999999994
Q gi|254781149|r  209 GEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGLRNKH  255 (266)
Q Consensus       209 g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~k~k~  255 (266)
T Consensus        70 ~~LSGGqrQRv~iAral~~~p~lllLDEPts~LD~~~r~~i~~~ik~l~~~~  121 (177)
T cd03222          70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEG  121 (177)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             5079899999999999823999999748865389999999999999999965