HHsearch alignment for GI: 254781149 and conserved domain: cd03225
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.10 E-value=1.7 Score=23.75 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=70.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-HHCC------C------------CEEEEC-------CCC---
Q ss_conf 7777765530168368870687414889999999996-3022------3------------236411-------675---
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM-AMSG------H------------GVAFFS-------LEM--- 180 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~-a~~g------~------------~Vl~fS-------lEM--- 180 (266)
T Consensus 15 ~~L~~vsl~i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ig~v~Q~p~~~~~~~tv~ 94 (211)
T cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVE 94 (211)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEECCCCCHHHHHCCEEEEEECCHHHCCCCCHH
T ss_conf 57753178884997999988999989999999964677988877899999997998998403899977832530558699
Q ss_pred ------------CHHHHHHHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----
Q ss_conf ------------34899999999630223234785-550178899899999999999997299547479988989-----
Q gi|254781149|r 181 ------------DREKLGARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM----- 242 (266)
Q Consensus 181 ------------s~~ql~~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~----- 242 (266)
T Consensus 95 e~i~~~~~~~~~~~~~~~~~~~~~l~~---~~l~~~~~~~~~~LSGGqkQrv~iAral~~~P~ililDEPTsgLD~~~~~ 171 (211)
T cd03225 95 EEVAFGLENLGLPEEEIEERVEEALEL---VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171 (211)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 999999998699999999999999998---69946663895459998999999999997599999997985558999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254781149|r 243 EFVHVANGLRN 253 (266)
Q Consensus 243 ~ira~aR~~k~ 253 (266)
T Consensus 172 ~i~~~l~~l~~ 182 (211)
T cd03225 172 ELLELLKKLKA 182 (211)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999997