HHsearch alignment for GI: 254781149 and conserved domain: cd03237
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.66 E-value=0.43 Score=27.87 Aligned_cols=120 Identities=16% Similarity=0.091 Sum_probs=70.5
Q ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCCCEEEE------CCCCCHHHHHHHHHHHHHCCCC----
Q ss_conf 553016836887068741488999999999630-------22323641------1675348999999996302232----
Q gi|254781149|r 136 MGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGHGVAFF------SLEMDREKLGARALSNLLYPSS---- 198 (266)
Q Consensus 136 ~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~~Vl~f------SlEMs~~ql~~R~ls~~t~~~~---- 198 (266)
T Consensus 19 ~Gti~~GEiv~liGpNGaGKSTLlk~l~Gll~p~~G~I~~~g~~i~~~pq~~~~~~~~tv~~~l~~~~~~~~~~~~~~~e 98 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE 98 (246)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf 88465798999997999769999999977878886079989820576874332577727999999886431212799999
Q ss_pred --CCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHHHHHH
Q ss_conf --347855501---78899899999999999997299547479988989-----9999999999994
Q gi|254781149|r 199 --SRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGLRNKH 255 (266)
Q Consensus 199 --s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~k~k~ 255 (266)
T Consensus 99 ~~~~l~l~~~~~r~~~~LSGGqkQRv~iA~aL~~~p~ilLLDEPts~LD~~~~~~i~~~i~~l~~~~ 165 (246)
T cd03237 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN 165 (246)
T ss_pred HHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9988499567648700289859999999999841999999848987689999999999999999867