HHsearch alignment for GI: 254781149 and conserved domain: cd03246

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.16  E-value=0.0045  Score=41.65  Aligned_cols=109  Identities=12%  Similarity=0.065  Sum_probs=71.3

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC---HHHHHHHHHHHHHCCCCC-CCCHHHC
Q ss_conf             777765530168368870687414889999999996302232364116753---489999999963022323-4785550
Q gi|254781149|r  131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMD---REKLGARALSNLLYPSSS-RIPYLNL  206 (266)
Q Consensus       131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs---~~ql~~R~ls~~t~~~~s-~I~~~~l  206 (266)
T Consensus        17 vL~~i~l~i~~G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~-~~i---~~v~Q~~~lf~~ti   92 (173)
T cd03246          17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELG-DHV---GYLPQDDELFSGSI   92 (173)
T ss_pred             CEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH-CCE---EEEECCCEECCCCH
T ss_conf             45476999859999999999998099999999666667999899999993328998984-208---99908883677758


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf             1788998999999999999972995474799889899
Q gi|254781149|r  207 IRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME  243 (266)
Q Consensus       207 ~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~  243 (266)
T Consensus        93 ~eNiLSGGQkQRvalARal~~~p~ililDEpts~LD~  129 (173)
T cd03246          93 AENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDV  129 (173)
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf             9976769999999999998279999999687668998