HHsearch alignment for GI: 254781149 and conserved domain: cd03247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.21 E-value=0.017 Score=37.65 Aligned_cols=112 Identities=16% Similarity=0.114 Sum_probs=71.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC-CCHHHCCC
Q ss_conf 77777655301683688706874148899999999963022323641167534899999999630223234-78555017
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSR-IPYLNLIR 208 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~-I~~~~l~~ 208 (266)
T Consensus 16 ~~L~~i~l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G~i~i~g~~i~~~~--~~~~~~i~~v~Q~~~lf~~ti~~ 93 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE--KALSSLISVLNQRPYLFDTTLRN 93 (178)
T ss_pred CCEECEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCEEHHHHH--HHHHHHEEEECCCCCCCCCHHHH
T ss_conf 6332558998699999999999875999999998617667886999999889978--99997208983556364541998
Q ss_pred --C-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf --8-8998999999999999972995474799889899
Q gi|254781149|r 209 --G-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 209 --g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
T Consensus 94 nlg~~LSgGqkqRv~iAral~~~p~ililDEpts~LD~ 131 (178)
T cd03247 94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDP 131 (178)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCH
T ss_conf 62888899999999999999649797672286556998