HHsearch alignment for GI: 254781149 and conserved domain: cd03247

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.21  E-value=0.017  Score=37.65  Aligned_cols=112  Identities=16%  Similarity=0.114  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC-CCHHHCCC
Q ss_conf             77777655301683688706874148899999999963022323641167534899999999630223234-78555017
Q gi|254781149|r  130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSR-IPYLNLIR  208 (266)
Q Consensus       130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~-I~~~~l~~  208 (266)
T Consensus        16 ~~L~~i~l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G~i~i~g~~i~~~~--~~~~~~i~~v~Q~~~lf~~ti~~   93 (178)
T cd03247          16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE--KALSSLISVLNQRPYLFDTTLRN   93 (178)
T ss_pred             CCEECEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCEEHHHHH--HHHHHHEEEECCCCCCCCCHHHH
T ss_conf             6332558998699999999999875999999998617667886999999889978--99997208983556364541998


Q ss_pred             --C-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf             --8-8998999999999999972995474799889899
Q gi|254781149|r  209 --G-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIME  243 (266)
Q Consensus       209 --g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~  243 (266)
T Consensus        94 nlg~~LSgGqkqRv~iAral~~~p~ililDEpts~LD~  131 (178)
T cd03247          94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDP  131 (178)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCH
T ss_conf             62888899999999999999649797672286556998