HHsearch alignment for GI: 254781149 and conserved domain: cd03249
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=91.90 E-value=0.49 Score=27.41 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=66.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CC--------------------CCE---------
Q ss_conf 77777655301683688706874148899999999963-0------22--------------------323---------
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SG--------------------HGV--------- 173 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g--------------------~~V--------- 173 (266)
T Consensus 17 ~vL~~isl~i~~G~~iaIvG~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eN 96 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAEN 96 (238)
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCEECCCCHHHH
T ss_conf 52225589976999999999999989999999823861885189999999231899999740699915896727529999
Q ss_pred -EEECCCCCHHHHHHHHHHHHHCCCC--CCCCHH---HC-CCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf -6411675348999999996302232--347855---50-178-89989999999999999729954747998898999
Q gi|254781149|r 174 -AFFSLEMDREKLGARALSNLLYPSS--SRIPYL---NL-IRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 174 -l~fSlEMs~~ql~~R~ls~~t~~~~--s~I~~~---~l-~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
T Consensus 97 i~~g~~~~~~~~~~-~a~~-~~~l~~~i~~lp~gl~t~ige~G~~LSgGQ~QRialARAl~~~~~ililDE~tsaLD~~ 173 (238)
T cd03249 97 IRYGKPDATDEEVE-EAAK-KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173 (238)
T ss_pred HHCCCCCCCHHHHH-HHHH-HHCCCHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 63368789999999-9999-97852435518687722507867858999999999999996599999997876678999