HHsearch alignment for GI: 254781149 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.49 E-value=0.14 Score=31.34 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=67.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH--------------------------HH-HCCCCE----------
Q ss_conf 77776553016836887068741488999999999--------------------------63-022323----------
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALH--------------------------MA-MSGHGV---------- 173 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~--------------------------~a-~~g~~V---------- 173 (266)
T Consensus 17 vL~ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNI 96 (234)
T cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENI 96 (234)
T ss_pred CEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCEECCCCHHHHH
T ss_conf 35360899879999999989998299999999667667886899999996608999997317999368947164599996
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCC------CCCCHHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf 6411675348999999996302232------34785550178-89989999999999999729954747998898999
Q gi|254781149|r 174 AFFSLEMDREKLGARALSNLLYPSS------SRIPYLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 174 l~fSlEMs~~ql~~R~ls~~t~~~~------s~I~~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
T Consensus 97 ~~g~~~~~~~~i~~~-l~~-~~l~~~i~~l~~gl~t~i~~~g~~LSgGQ~QRi~lARal~~~~~iliLDEpts~LD~~ 172 (234)
T cd03251 97 AYGRPGATREEVEEA-ARA-ANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE 172 (234)
T ss_pred HCCCCCCCHHHHHHH-HHH-HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 147989999999999-998-6345542027788755638878958999999999999996499989996876689989