HHsearch alignment for GI: 254781149 and conserved domain: cd03251

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.49  E-value=0.14  Score=31.34  Aligned_cols=112  Identities=14%  Similarity=0.093  Sum_probs=67.3

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH--------------------------HH-HCCCCE----------
Q ss_conf             77776553016836887068741488999999999--------------------------63-022323----------
Q gi|254781149|r  131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALH--------------------------MA-MSGHGV----------  173 (266)
Q Consensus       131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~--------------------------~a-~~g~~V----------  173 (266)
T Consensus        17 vL~ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNI   96 (234)
T cd03251          17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENI   96 (234)
T ss_pred             CEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCEECCCCHHHHH
T ss_conf             35360899879999999989998299999999667667886899999996608999997317999368947164599996


Q ss_pred             EEECCCCCHHHHHHHHHHHHHCCCC------CCCCHHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf             6411675348999999996302232------34785550178-89989999999999999729954747998898999
Q gi|254781149|r  174 AFFSLEMDREKLGARALSNLLYPSS------SRIPYLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF  244 (266)
Q Consensus       174 l~fSlEMs~~ql~~R~ls~~t~~~~------s~I~~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i  244 (266)
T Consensus        97 ~~g~~~~~~~~i~~~-l~~-~~l~~~i~~l~~gl~t~i~~~g~~LSgGQ~QRi~lARal~~~~~iliLDEpts~LD~~  172 (234)
T cd03251          97 AYGRPGATREEVEEA-ARA-ANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE  172 (234)
T ss_pred             HCCCCCCCHHHHHHH-HHH-HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf             147989999999999-998-6345542027788755638878958999999999999996499989996876689989