HHsearch alignment for GI: 254781149 and conserved domain: cd03256
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.63 Score=26.70 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH------------------------HCCCCEEEEC----
Q ss_conf 111377777655301683688706874148899999999963------------------------0223236411----
Q gi|254781149|r 126 KWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA------------------------MSGHGVAFFS---- 177 (266)
Q Consensus 126 ~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a------------------------~~g~~Vl~fS---- 177 (266)
T Consensus 11 ~~g~~~L~~isl~i~~Ge~~~iiGpsGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~~l~~~R~~ig~vfQ~~~l~ 90 (241)
T cd03256 11 PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred CCCCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEECCCCCCC
T ss_conf 97988997838899999899999999833999999997499998559999999989899899999864918980799789
Q ss_pred CCCCHHHHH-----------------------HHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 675348999-----------------------99999630223234785-550178899899999999999997299547
Q gi|254781149|r 178 LEMDREKLG-----------------------ARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLII 233 (266)
Q Consensus 178 lEMs~~ql~-----------------------~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~I 233 (266)
T Consensus 91 ~~ltV~enV~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v---gl~~~~~~~~~~LSGGq~QRVaIARAL~~~P~ill 167 (241)
T cd03256 91 ERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV---GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLIL 167 (241)
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHC---CCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 988999998636541330557761799599999999999976---99778767844148028999999999855999899
Q ss_pred ECCCCCCHH-----HHHHHHHHHHHH
Q ss_conf 479988989-----999999999999
Q gi|254781149|r 234 DDRPSPGIM-----EFVHVANGLRNK 254 (266)
Q Consensus 234 dD~~~~ti~-----~ira~aR~~k~k 254 (266)
T Consensus 168 ~DEPts~LD~~~~~~i~~ll~~l~~~ 193 (241)
T cd03256 168 ADEPVASLDPASSRQVMDLLKRINRE 193 (241)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 62876658999999999999999985