HHsearch alignment for GI: 254781149 and conserved domain: cd03258
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.61 E-value=1.2 Score=24.68 Aligned_cols=114 Identities=14% Similarity=0.113 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CC---------------CE-EEE---CC----
Q ss_conf 377777655301683688706874148899999999963-02------23---------------23-641---16----
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GH---------------GV-AFF---SL---- 178 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~---------------~V-l~f---Sl---- 178 (266)
T Consensus 18 ~~al~~vsl~i~~Ge~~~ivG~SGsGKSTllr~i~gL~~p~sG~I~~~g~~i~~~~~~~~~~~Rr~ig~VFQ~~~L~~~~ 97 (233)
T cd03258 18 VTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 99984828899999999998898058999999996799999808999999989799999999862587794377889988
Q ss_pred -------------CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf -------------753489999999963022323478555017889989999999999999729954747998898999
Q gi|254781149|r 179 -------------EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 179 -------------EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
T Consensus 98 tv~~nv~~~l~~~~~~~~~~~~r~~~lL~~vgL~~~--~~~yP~eLSGGq~QRVaIARAL~~~P~lllaDEPTs~LD~~ 174 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK--ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174 (233)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH--HHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 399999999997499999999999999986799167--62696526778889999999983399899965976646988