HHsearch alignment for GI: 254781149 and conserved domain: cd03259
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.09 E-value=0.39 Score=28.12 Aligned_cols=124 Identities=18% Similarity=0.124 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCCC----------EEEE----C--CCCCHHH
Q ss_conf 1377777655301683688706874148899999999963-0------2232----------3641----1--6753489
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGHG----------VAFF----S--LEMDREK 184 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~~----------Vl~f----S--lEMs~~q 184 (266)
T Consensus 12 ~~~al~~vs~~i~~Gei~~iiGpnGaGKSTl~~~i~Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 99998461779889989999999997399999999759998970899999998889977878699906986588981999
Q ss_pred HHH---------------HHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----H
Q ss_conf 999---------------9999630223234785-550178899899999999999997299547479988989-----9
Q gi|254781149|r 185 LGA---------------RALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----E 243 (266)
Q Consensus 185 l~~---------------R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ 243 (266)
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~---~~l~~~~~~~~~~LSGG~kQrv~iAraL~~~P~illlDEPt~gLD~~~~~~ 168 (213)
T cd03259 92 NIAFGLKLRGVPKAEIRARVRELLEL---VGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168 (213)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH---CCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH
T ss_conf 99889987599989999999999998---699647637703389899999999876227999999839864379999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254781149|r 244 FVHVANGLRNK 254 (266)
Q Consensus 244 ira~aR~~k~k 254 (266)
T Consensus 169 i~~li~~l~~~ 179 (213)
T cd03259 169 LREELKELQRE 179 (213)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999996