HHsearch alignment for GI: 254781149 and conserved domain: cd03261
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.25 E-value=0.22 Score=29.93 Aligned_cols=125 Identities=18% Similarity=0.153 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC-----------------------CEEEEC-
Q ss_conf 3777776553016836887068741488999999999630-------223-----------------------236411-
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH-----------------------GVAFFS- 177 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~-----------------------~Vl~fS- 177 (266)
T Consensus 13 ~~~L~~isl~i~~Ge~~~iiG~SGsGKSTll~~i~gL~~p~~G~I~~~g~~i~~~~~~~~~~~r~~ig~vfQ~~~Lf~~l 92 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL 92 (235)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHCCEEEEECCCCCCCCC
T ss_conf 98882606488799899999999972999999997599989858999999999899889999757829970498658999
Q ss_pred ---------C----CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH---
Q ss_conf ---------6----753489999999963022323478555017889989999999999999729954747998898---
Q gi|254781149|r 178 ---------L----EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI--- 241 (266)
Q Consensus 178 ---------l----EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti--- 241 (266)
T Consensus 93 Tv~eNv~~~l~~~~~~~~~~~~~r~~~~L~~vgL~~~--~~~~p~~LSGGq~QRvaIARALv~~P~illlDEPts~LDp~ 170 (235)
T cd03261 93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA--EDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170 (235)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH--HHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 6999999999995799999999999999986799257--64784106999999999999985489989980886647989
Q ss_pred --HHHHHHHHHHHHHH
Q ss_conf --99999999999994
Q gi|254781149|r 242 --MEFVHVANGLRNKH 255 (266)
Q Consensus 242 --~~ira~aR~~k~k~ 255 (266)
T Consensus 171 ~~~~i~~li~~l~~~~ 186 (235)
T cd03261 171 ASGVIDDLIRSLKKEL 186 (235)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999972