HHsearch alignment for GI: 254781149 and conserved domain: cd03265
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.95 E-value=0.54 Score=27.16 Aligned_cols=128 Identities=13% Similarity=0.060 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC------C-----------CEEEE------CCCCCHH
Q ss_conf 1377777655301683688706874148899999999963-022------3-----------23641------1675348
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG------H-----------GVAFF------SLEMDRE 183 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g------~-----------~Vl~f------SlEMs~~ 183 (266)
T Consensus 12 ~~~al~~is~~v~~Gei~gllGpNGAGKSTll~~i~Gl~~p~~G~i~i~G~~~~~~~~~~r~~ig~~pq~~~l~~~lTv~ 91 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW 91 (220)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHCCEEEECCCCCCCCCCHH
T ss_conf 99998582679889839999999987199999999769788962899999998839899982838990787679889999
Q ss_pred HHHHHHHHHHHCCCCC-----------CCC---HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH-----HHH
Q ss_conf 9999999963022323-----------478---555017889989999999999999729954747998898-----999
Q gi|254781149|r 184 KLGARALSNLLYPSSS-----------RIP---YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI-----MEF 244 (266)
Q Consensus 184 ql~~R~ls~~t~~~~s-----------~I~---~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti-----~~i 244 (266)
T Consensus 92 e~l-~~~~~l~g~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~ia~Al~~~P~lliLDEPt~gLDp~~~~~i 170 (220)
T cd03265 92 ENL-YIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170 (220)
T ss_pred HHH-HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 999-9999981999999999999999977996797370434799999999999998569998998088668899999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999947
Q gi|254781149|r 245 VHVANGLRNKHT 256 (266)
Q Consensus 245 ra~aR~~k~k~~ 256 (266)
T Consensus 171 ~~~i~~l~~~~g 182 (220)
T cd03265 171 WEYIEKLKEEFG 182 (220)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998389