HHsearch alignment for GI: 254781149 and conserved domain: cd03290
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.46 E-value=0.11 Score=31.87 Aligned_cols=117 Identities=17% Similarity=0.209 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCC----------------------CEEEECC----
Q ss_conf 1113777776553016836887068741488999999999630-223----------------------2364116----
Q gi|254781149|r 126 KWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGH----------------------GVAFFSL---- 178 (266)
Q Consensus 126 ~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~----------------------~Vl~fSl---- 178 (266)
T Consensus 11 ~~~~~vL~~inl~i~~Ge~~~IvG~sGsGKSTLl~~l~g~~~~~~G~I~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l 90 (218)
T cd03290 11 GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWL 90 (218)
T ss_pred CCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHCCEEEEEECCCCC
T ss_conf 99990564769998699999999999980999999985556567764998986668646777888756538998156656
Q ss_pred -CCCHHH-----------HHHHHHHHHHC-CCCCCCCH---HHCC-CC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf -753489-----------99999996302-23234785---5501-78-8998999999999999972995474799889
Q gi|254781149|r 179 -EMDREK-----------LGARALSNLLY-PSSSRIPY---LNLI-RG-EINQEQYRISQGICEKLQDFPLIIDDRPSPG 240 (266)
Q Consensus 179 -EMs~~q-----------l~~R~ls~~t~-~~~s~I~~---~~l~-~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~t 240 (266)
T Consensus 91 f~~Tv~eNi~~g~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~i~~~g~~LSGGQ~QRi~iARal~~~~~illlDEptsa 170 (218)
T cd03290 91 LNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSA 170 (218)
T ss_pred CCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 78899998733797788999999999987777875105430540567887798999999999998448999999896557
Q ss_pred HH
Q ss_conf 89
Q gi|254781149|r 241 IM 242 (266)
Q Consensus 241 i~ 242 (266)
T Consensus 171 LD 172 (218)
T cd03290 171 LD 172 (218)
T ss_pred CC
T ss_conf 88