HHsearch alignment for GI: 254781149 and conserved domain: cd03293

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.25  E-value=0.17  Score=30.69  Aligned_cols=113  Identities=15%  Similarity=0.100  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CC---------------CEEE----------E
Q ss_conf             377777655301683688706874148899999999963-02------23---------------2364----------1
Q gi|254781149|r  129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GH---------------GVAF----------F  176 (266)
Q Consensus       129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~---------------~Vl~----------f  176 (266)
T Consensus        17 ~~al~~vsl~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~ig~vfQ~~~L~p~~tv~eni~~   96 (220)
T cd03293          17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL   96 (220)
T ss_pred             EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf             99996718898799899999999957999999997599988738999999678889887999248853778879999988


Q ss_pred             CC---CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf             16---75348999999996302232347855501788998999999999999972995474799889899
Q gi|254781149|r  177 SL---EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME  243 (266)
Q Consensus       177 Sl---EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~  243 (266)
T Consensus        97 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~--~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPts~LD~  164 (220)
T cd03293          97 GLELQGVPKAEARERAEELLELVGLSGF--ENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA  164 (220)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCCHHH--HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf             9986599989999999999998789547--6189312999999999999998669999998088765699