HHsearch alignment for GI: 254781149 and conserved domain: cd03293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.25 E-value=0.17 Score=30.69 Aligned_cols=113 Identities=15% Similarity=0.100 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CC---------------CEEE----------E
Q ss_conf 377777655301683688706874148899999999963-02------23---------------2364----------1
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GH---------------GVAF----------F 176 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~---------------~Vl~----------f 176 (266)
T Consensus 17 ~~al~~vsl~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~ig~vfQ~~~L~p~~tv~eni~~ 96 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 99996718898799899999999957999999997599988738999999678889887999248853778879999988
Q ss_pred CC---CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 16---75348999999996302232347855501788998999999999999972995474799889899
Q gi|254781149|r 177 SL---EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 177 Sl---EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
T Consensus 97 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~--~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPts~LD~ 164 (220)
T cd03293 97 GLELQGVPKAEARERAEELLELVGLSGF--ENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHH--HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 9986599989999999999998789547--6189312999999999999998669999998088765699