>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=94.08 E-value=0.27 Score=29.22 Aligned_cols=125 Identities=15% Similarity=0.091 Sum_probs=74.1 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CC----------------CCE-EEE-------- Q ss_conf 3777776553016836887068741488999999999630-------22----------------323-641-------- Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SG----------------HGV-AFF-------- 176 (266) Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g----------------~~V-l~f-------- 176 (266) T Consensus 37 ~~aL~~vsl~i~~GE~~~ivG~SGsGKSTLLr~i~GL~~p~~G~I~~~G~~i~~~~~~~l~~~r~~~igmVFQ~~aL~P~ 116 (269) T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116 (269) T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 27977747588899999999899848999999997599999759999999999999899988525646999615754767 Q ss_pred ---------CC---CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-- Q ss_conf ---------16---7534899999999630223234785550178899899999999999997299547479988989-- Q gi|254781149|r 177 ---------SL---EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-- 242 (266) Q Consensus 177 ---------Sl---EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-- 242 (266) T Consensus 117 ltV~eNV~~~L~~~~~~~~e~~~rv~e~L~~vgL~~~--~~~~P~qLSGGq~QRVaIARALa~~P~iLLlDEPtsaLD~~ 194 (269) T cd03294 117 RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGW--EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL 194 (269) T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH--HHCCHHHHCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH T ss_conf 8799998688885289978999999999986798677--75696784948888999999986399899975875425999 Q ss_pred ---HHHHHHHHHHHHH Q ss_conf ---9999999999994 Q gi|254781149|r 243 ---EFVHVANGLRNKH 255 (266) Q Consensus 243 ---~ira~aR~~k~k~ 255 (266) T Consensus 195 ~~~~i~~~l~~l~~~~ 210 (269) T cd03294 195 IRREMQDELLRLQAEL 210 (269) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999974

HHsearch alignment for GI: 254781149 and conserved domain: cd03294