>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=94.00 E-value=0.48 Score=27.52 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=74.3 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCCC------------E-EEEC-----CCC-- Q ss_conf 1377777655301683688706874148899999999963-0------2232------------3-6411-----675-- Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGHG------------V-AFFS-----LEM-- 180 (266) Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~~------------V-l~fS-----lEM-- 180 (266) T Consensus 13 ~~~al~~vsl~i~~Ge~~~ilGpSG~GKSTllr~i~gl~~p~~G~I~i~g~~i~~~~~~~lrr~ig~vfQ~~~Lfp~ltV 92 (242) T cd03295 13 GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242) T ss_pred CCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCCH T ss_conf 78898302768869989999999995699999999759999815999999999999978973886799179975888829 Q ss_pred -------------CHHHHHHHHHHHHHCCCCCCCCHHHC---CCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-- Q ss_conf -------------34899999999630223234785550---178899899999999999997299547479988989-- Q gi|254781149|r 181 -------------DREKLGARALSNLLYPSSSRIPYLNL---IRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-- 242 (266) Q Consensus 181 -------------s~~ql~~R~ls~~t~~~~s~I~~~~l---~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-- 242 (266) T Consensus 93 ~eNi~~~~~~~~~~~~~~~~rv~ell~~---v~L~~~~~~~~~p~~LSGGqkQRvaiARAl~~~P~ilLlDEP~saLD~~ 169 (242) T cd03295 93 EENIALVPKLLKWPKEKIRERADELLAL---VGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPI 169 (242) T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH T ss_conf 9999999997599999999999999987---4999301100795668999999999999996299999981876546989 Q ss_pred ---HHHHHHHHHHHH Q ss_conf ---999999999999 Q gi|254781149|r 243 ---EFVHVANGLRNK 254 (266) Q Consensus 243 ---~ira~aR~~k~k 254 (266) T Consensus 170 ~~~~i~~~l~~l~~~ 184 (242) T cd03295 170 TRDQLQEEFKRLQQE 184 (242) T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999997

HHsearch alignment for GI: 254781149 and conserved domain: cd03295