Query gi|254781149|ref|YP_003065562.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 266
No_of_seqs 147 out of 1717
Neff 7.8
Searched_HMMs 39220
Date Mon May 30 06:07:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781149.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07773 replicative DNA helic 100.0 0 0 423.7 26.8 239 5-256 68-313 (868)
2 PRK09165 replicative DNA helic 100.0 0 0 413.7 27.0 240 5-256 69-329 (484)
3 PRK07004 replicative DNA helic 100.0 0 0 409.3 25.8 244 4-258 74-325 (460)
4 PRK05636 replicative DNA helic 100.0 0 0 407.5 26.7 240 4-256 131-377 (507)
5 PRK08506 replicative DNA helic 100.0 0 0 406.9 26.1 241 4-259 63-305 (473)
6 PRK08760 replicative DNA helic 100.0 0 0 401.1 27.2 241 5-256 93-339 (476)
7 PRK08694 consensus 100.0 0 0 398.2 27.6 242 5-257 80-329 (468)
8 PRK06321 replicative DNA helic 100.0 0 0 399.2 25.6 247 4-256 75-336 (472)
9 PRK08082 consensus 100.0 0 0 396.8 26.4 240 4-256 69-313 (453)
10 PRK05595 replicative DNA helic 100.0 0 0 395.7 26.2 240 4-256 67-311 (444)
11 PRK07263 consensus 100.0 0 0 394.7 26.4 240 4-256 69-313 (453)
12 PRK05748 replicative DNA helic 100.0 0 0 393.9 26.0 243 4-259 69-316 (448)
13 PRK08840 replicative DNA helic 100.0 0 0 390.0 26.1 244 4-258 79-330 (464)
14 PRK06904 replicative DNA helic 100.0 0 0 390.2 25.7 247 4-258 82-335 (472)
15 PRK08006 replicative DNA helic 100.0 0 0 389.6 25.8 244 4-258 86-337 (471)
16 COG0305 DnaB Replicative DNA h 100.0 0 0 388.7 25.0 240 4-256 62-306 (435)
17 TIGR03600 phage_DnaB phage rep 100.0 0 0 386.2 25.8 244 4-258 57-306 (421)
18 PRK06749 replicative DNA helic 100.0 0 0 378.4 26.8 236 4-257 59-298 (428)
19 TIGR00665 DnaB replicative DNA 100.0 1.7E-37 4.3E-42 281.8 21.7 242 11-261 87-337 (465)
20 pfam03796 DnaB_C DnaB-like hel 100.0 1.2E-31 3.2E-36 240.8 13.4 128 124-256 1-129 (186)
21 cd00984 DnaB_C DnaB helicase C 100.0 3.4E-28 8.8E-33 216.8 12.5 122 130-256 1-123 (242)
22 cd01122 GP4d_helicase GP4d_hel 99.9 4.1E-26 1E-30 202.4 13.9 133 117-256 5-140 (271)
23 PRK05973 replicative DNA helic 99.9 8.9E-23 2.3E-27 179.1 8.3 61 132-192 54-114 (237)
24 cd01121 Sms Sms (bacterial rad 99.5 4.7E-13 1.2E-17 111.3 10.5 126 123-257 62-198 (372)
25 PRK11823 DNA repair protein Ra 99.4 1.9E-12 4.8E-17 107.1 10.1 126 122-257 69-205 (454)
26 pfam06745 KaiC KaiC. This fami 99.4 8.4E-12 2.1E-16 102.5 11.2 67 125-191 1-69 (231)
27 PRK09302 circadian clock prote 99.4 2.8E-12 7.2E-17 105.8 8.4 109 124-239 247-368 (501)
28 PRK04328 hypothetical protein; 99.4 1.3E-11 3.3E-16 101.2 11.0 68 124-191 5-73 (250)
29 PRK06067 flagellar accessory p 99.3 1.8E-11 4.6E-16 100.2 10.7 69 124-192 13-82 (241)
30 PRK09302 circadian clock prote 99.3 2E-11 5E-16 100.0 9.4 71 124-195 5-77 (501)
31 TIGR00416 sms DNA repair prote 99.3 8.2E-12 2.1E-16 102.6 6.7 127 122-251 82-230 (481)
32 COG1066 Sms Predicted ATP-depe 99.3 6.8E-11 1.7E-15 96.2 11.2 123 122-255 72-206 (456)
33 PRK09361 radB DNA repair and r 99.3 1.3E-10 3.3E-15 94.2 12.0 61 125-185 5-67 (224)
34 cd01394 radB RadB. The archaea 99.2 3.1E-10 8E-15 91.6 12.3 56 125-180 1-57 (218)
35 COG0467 RAD55 RecA-superfamily 99.1 2.1E-10 5.3E-15 92.8 6.7 69 123-191 3-72 (260)
36 cd01123 Rad51_DMC1_radA Rad51_ 99.0 3.5E-08 8.8E-13 77.3 13.1 57 125-181 1-64 (235)
37 PRK08533 flagellar accessory p 98.9 1.5E-08 3.9E-13 79.8 9.8 69 124-192 5-74 (230)
38 KOG2373 consensus 98.8 1.5E-08 3.9E-13 79.8 7.3 99 121-233 251-350 (514)
39 cd01393 recA_like RecA is a b 98.8 3.2E-07 8E-12 70.6 12.5 66 125-190 1-74 (226)
40 cd01124 KaiC KaiC is a circadi 98.6 1.6E-07 4.2E-12 72.6 6.9 48 145-192 2-49 (187)
41 pfam00154 RecA recA bacterial 98.6 1.4E-06 3.6E-11 66.1 10.9 130 122-262 30-175 (322)
42 cd00983 recA RecA is a bacter 98.5 2E-06 5.2E-11 65.0 11.0 130 122-262 33-178 (325)
43 pfam08423 Rad51 Rad51. Rad51 i 98.4 1.7E-05 4.3E-10 58.6 13.7 109 122-236 22-146 (261)
44 PRK09354 recA recombinase A; P 98.3 1.3E-05 3.3E-10 59.4 11.2 131 121-262 37-183 (350)
45 COG0468 RecA RecA/RadA recombi 98.3 2E-05 5.1E-10 58.0 11.9 133 122-261 39-181 (279)
46 cd01120 RecA-like_NTPases RecA 98.3 7E-06 1.8E-10 61.2 9.1 50 144-193 1-50 (165)
47 PRK04301 radA DNA repair and r 98.3 2.9E-05 7.3E-10 57.0 12.0 137 122-264 82-245 (318)
48 PTZ00035 Rad51; Provisional 98.0 0.0019 4.8E-08 44.3 17.3 140 122-264 109-271 (350)
49 cd01125 repA Hexameric Replica 98.0 7.6E-05 1.9E-09 54.0 9.0 55 142-196 1-67 (239)
50 PRK09519 recA recombinase A; R 97.9 0.0005 1.3E-08 48.3 12.0 130 122-262 38-183 (790)
51 COG2874 FlaH Predicted ATPases 97.9 4.3E-05 1.1E-09 55.8 6.3 69 124-192 9-78 (235)
52 TIGR02237 recomb_radB DNA repa 97.7 3.7E-05 9.4E-10 56.2 3.9 98 132-236 1-111 (223)
53 PRK06526 transposase; Provisio 97.6 0.0075 1.9E-07 40.1 14.5 75 139-238 95-169 (254)
54 PRK09183 transposase/IS protei 97.2 0.00036 9.3E-09 49.3 3.9 50 139-192 98-147 (258)
55 pfam01695 IstB IstB-like ATP b 97.2 0.0052 1.3E-07 41.2 9.6 49 139-191 44-92 (178)
56 PRK08116 hypothetical protein; 97.2 0.0052 1.3E-07 41.2 9.5 97 145-247 111-222 (262)
57 PRK12377 putative replication 97.1 0.00063 1.6E-08 47.6 4.4 48 141-192 100-147 (248)
58 pfam09140 MipZ ATPase MipZ. Mi 97.1 0.0039 9.9E-08 42.1 8.2 31 150-180 9-39 (261)
59 pfam06068 TIP49 TIP49 C-termin 97.1 0.0015 3.9E-08 44.9 6.0 56 137-193 45-106 (395)
60 PRK08181 transposase; Validate 97.1 0.00076 1.9E-08 47.0 4.3 79 139-242 103-182 (269)
61 KOG1433 consensus 97.0 0.0062 1.6E-07 40.7 8.7 62 119-180 87-149 (326)
62 cd02035 ArsA ArsA ATPase funct 97.0 0.00079 2E-08 46.9 4.1 36 144-179 1-36 (217)
63 PRK06921 hypothetical protein; 97.0 0.015 3.8E-07 38.0 10.3 102 144-251 118-235 (265)
64 COG1224 TIP49 DNA helicase TIP 97.0 0.002 5.2E-08 44.0 5.7 59 137-195 60-123 (450)
65 TIGR02655 circ_KaiC circadian 96.9 0.0016 4E-08 44.8 4.6 117 122-253 242-371 (484)
66 PRK09401 reverse gyrase; Revie 96.9 0.0049 1.3E-07 41.4 7.0 88 126-219 79-169 (1176)
67 PRK13764 ATPase; Provisional 96.9 0.0012 3E-08 45.7 3.7 42 141-184 258-299 (605)
68 smart00382 AAA ATPases associa 96.8 0.0076 1.9E-07 40.1 7.7 50 141-190 1-50 (148)
69 COG3598 RepA RecA-family ATPas 96.8 0.0044 1.1E-07 41.7 6.4 70 139-211 86-165 (402)
70 PRK07952 DNA replication prote 96.8 0.023 6E-07 36.7 9.7 98 144-247 98-209 (242)
71 COG1110 Reverse gyrase [DNA re 96.7 0.0093 2.4E-07 39.5 7.6 84 132-217 86-171 (1187)
72 TIGR03346 chaperone_ClpB ATP-d 96.7 0.066 1.7E-06 33.5 13.0 79 105-183 155-240 (852)
73 cd00550 ArsA_ATPase Oxyanion-t 96.7 0.0024 6.2E-08 43.5 4.4 58 143-204 126-192 (254)
74 COG1855 ATPase (PilT family) [ 96.7 0.0019 4.8E-08 44.3 3.6 53 132-186 251-305 (604)
75 PRK06696 uridine kinase; Valid 96.6 0.0052 1.3E-07 41.2 5.7 51 129-179 11-63 (227)
76 cd03238 ABC_UvrA The excision 96.6 0.0099 2.5E-07 39.3 7.0 118 129-252 8-136 (176)
77 PRK05703 flhF flagellar biosyn 96.6 0.022 5.6E-07 36.9 8.5 88 141-242 209-302 (412)
78 TIGR03499 FlhF flagellar biosy 96.5 0.017 4.2E-07 37.7 7.7 85 141-238 193-282 (282)
79 PRK10865 protein disaggregatio 96.5 0.086 2.2E-06 32.7 13.1 126 129-257 184-359 (857)
80 cd03214 ABC_Iron-Siderophores_ 96.5 0.012 3E-07 38.8 6.9 124 130-255 13-147 (180)
81 TIGR03345 VI_ClpV1 type VI sec 96.5 0.087 2.2E-06 32.7 13.2 55 129-183 193-254 (852)
82 cd03115 SRP The signal recogni 96.5 0.034 8.6E-07 35.5 8.9 88 144-240 2-94 (173)
83 pfam00448 SRP54 SRP54-type pro 96.4 0.038 9.8E-07 35.2 9.1 89 144-241 3-96 (196)
84 TIGR01054 rgy reverse gyrase; 96.4 0.014 3.6E-07 38.2 6.6 88 131-221 87-180 (1843)
85 TIGR03029 EpsG chain length de 96.4 0.0074 1.9E-07 40.1 5.2 50 140-189 102-151 (274)
86 PRK09841 cryptic autophosphory 96.4 0.008 2E-07 39.9 5.2 46 144-189 534-579 (726)
87 cd02038 FleN-like FleN is a me 96.3 0.0063 1.6E-07 40.6 4.5 37 145-181 3-39 (139)
88 cd03228 ABCC_MRP_Like The MRP 96.3 0.016 4E-07 37.8 6.4 112 130-245 16-131 (171)
89 CHL00060 atpB ATP synthase CF1 96.3 0.0054 1.4E-07 41.1 4.0 58 124-182 138-197 (480)
90 COG2909 MalT ATP-dependent tra 96.3 0.074 1.9E-06 33.2 9.7 120 132-253 28-155 (894)
91 PRK11519 tyrosine kinase; Prov 96.3 0.011 2.9E-07 38.8 5.5 49 141-189 525-574 (720)
92 TIGR02012 tigrfam_recA protein 96.3 0.011 2.9E-07 38.8 5.5 129 121-260 32-176 (322)
93 cd00009 AAA The AAA+ (ATPases 96.2 0.041 1.1E-06 34.9 8.4 40 141-180 18-57 (151)
94 PRK13637 cbiO cobalt transport 96.2 0.046 1.2E-06 34.6 8.6 126 127-255 18-194 (287)
95 TIGR02639 ClpA ATP-dependent C 96.2 0.0067 1.7E-07 40.4 4.2 196 6-235 98-310 (774)
96 cd03247 ABCC_cytochrome_bd The 96.2 0.017 4.3E-07 37.6 6.2 112 130-243 16-131 (178)
97 pfam02374 ArsA_ATPase Anion-tr 96.2 0.0075 1.9E-07 40.1 4.4 32 173-207 210-241 (304)
98 cd00267 ABC_ATPase ABC (ATP-bi 96.2 0.037 9.5E-07 35.2 7.9 98 131-244 14-114 (157)
99 COG1484 DnaC DNA replication p 96.2 0.012 3E-07 38.7 5.4 48 141-192 104-151 (254)
100 cd01133 F1-ATPase_beta F1 ATP 96.2 0.0034 8.6E-08 42.5 2.6 53 124-177 52-104 (274)
101 KOG2680 consensus 96.2 0.0022 5.5E-08 43.9 1.5 54 137-190 61-119 (454)
102 cd03246 ABCC_Protease_Secretio 96.2 0.0045 1.1E-07 41.7 3.1 109 131-243 17-129 (173)
103 PRK04841 transcriptional regul 96.0 0.15 3.9E-06 30.9 11.8 42 211-254 839-880 (903)
104 PRK06995 flhF flagellar biosyn 96.0 0.06 1.5E-06 33.8 8.3 92 141-244 175-270 (404)
105 PRK06835 DNA replication prote 96.0 0.0094 2.4E-07 39.4 4.0 105 137-247 177-296 (330)
106 PRK07471 DNA polymerase III su 96.0 0.06 1.5E-06 33.8 8.1 114 141-254 38-196 (363)
107 PRK12597 F0F1 ATP synthase sub 95.9 0.0084 2.1E-07 39.8 3.6 52 124-176 124-175 (459)
108 pfam02492 cobW CobW/HypB/UreG, 95.9 0.059 1.5E-06 33.8 7.8 95 144-245 2-102 (174)
109 PRK09280 F0F1 ATP synthase sub 95.9 0.0097 2.5E-07 39.3 3.7 53 124-177 128-180 (466)
110 cd03230 ABC_DR_subfamily_A Thi 95.9 0.019 4.8E-07 37.3 5.1 122 129-252 13-142 (173)
111 PRK13640 cbiO cobalt transport 95.9 0.046 1.2E-06 34.6 7.1 121 129-254 21-193 (283)
112 TIGR00956 3a01205 Pleiotropic 95.8 0.0059 1.5E-07 40.8 2.5 66 100-168 49-114 (1466)
113 cd03216 ABC_Carb_Monos_I This 95.8 0.028 7.1E-07 36.1 5.8 113 128-252 12-129 (163)
114 COG1618 Predicted nucleotide k 95.8 0.012 3E-07 38.7 3.9 92 145-236 8-108 (179)
115 PRK13635 cbiO cobalt transport 95.8 0.089 2.3E-06 32.6 8.3 120 130-254 21-189 (279)
116 cd02040 NifH NifH gene encodes 95.7 0.017 4.3E-07 37.7 4.5 35 145-179 4-38 (270)
117 cd03215 ABC_Carb_Monos_II This 95.7 0.02 5E-07 37.2 4.8 122 130-252 14-151 (182)
118 PRK07667 uridine kinase; Provi 95.7 0.018 4.7E-07 37.4 4.6 38 144-181 16-53 (190)
119 TIGR03305 alt_F1F0_F1_bet alte 95.7 0.0086 2.2E-07 39.7 2.9 52 124-176 121-172 (449)
120 PRK11034 clpA ATP-dependent Cl 95.7 0.21 5.4E-06 30.0 12.9 55 129-183 192-253 (758)
121 cd03233 ABC_PDR_domain1 The pl 95.7 0.027 7E-07 36.2 5.3 115 129-253 20-166 (202)
122 COG1245 Predicted ATPase, RNas 95.7 0.11 2.7E-06 32.1 8.3 126 125-253 341-500 (591)
123 cd03213 ABCG_EPDR ABCG transpo 95.6 0.023 5.8E-07 36.7 4.7 120 127-253 20-159 (194)
124 TIGR00345 arsA arsenite-activa 95.6 0.012 3E-07 38.7 3.1 40 147-187 2-43 (330)
125 TIGR02173 cyt_kin_arch cytidyl 95.6 0.01 2.7E-07 39.1 2.8 31 144-174 2-32 (173)
126 PRK08939 primosomal protein Dn 95.5 0.16 4.1E-06 30.8 8.8 102 137-248 154-270 (306)
127 cd02036 MinD Bacterial cell di 95.5 0.021 5.4E-07 37.0 4.3 34 146-179 4-37 (179)
128 pfam00142 Fer4_NifH 4Fe-4S iro 95.5 0.019 4.9E-07 37.2 4.1 34 146-179 4-37 (269)
129 pfam08433 KTI12 Chromatin asso 95.5 0.018 4.6E-07 37.4 3.9 23 38-60 45-67 (266)
130 pfam01656 CbiA CobQ/CobB/MinD/ 95.5 0.021 5.4E-07 37.0 4.2 34 146-179 3-36 (212)
131 CHL00175 minD septum-site dete 95.5 0.025 6.3E-07 36.5 4.5 35 145-179 17-51 (279)
132 TIGR03371 cellulose_yhjQ cellu 95.5 0.022 5.6E-07 36.8 4.2 45 142-191 115-159 (246)
133 cd02028 UMPK_like Uridine mono 95.4 0.02 5.2E-07 37.1 4.0 107 144-255 1-141 (179)
134 KOG1564 consensus 95.4 0.01 2.6E-07 39.1 2.5 60 124-183 83-149 (351)
135 PRK03846 adenylylsulfate kinas 95.4 0.19 4.8E-06 30.3 8.8 94 139-252 21-118 (198)
136 PRK13642 cbiO cobalt transport 95.4 0.2 5.1E-06 30.1 8.9 125 128-254 19-189 (277)
137 COG2401 ABC-type ATPase fused 95.4 0.13 3.3E-06 31.5 7.9 131 132-264 399-559 (593)
138 PRK11889 flhF flagellar biosyn 95.4 0.18 4.5E-06 30.5 8.6 92 142-242 241-334 (436)
139 PRK00411 cdc6 cell division co 95.3 0.15 3.9E-06 31.0 8.2 64 131-195 45-112 (394)
140 PRK11650 ugpC glycerol-3-phosp 95.3 0.12 2.9E-06 31.8 7.6 124 129-254 17-183 (358)
141 TIGR03015 pepcterm_ATPase puta 95.3 0.28 7.2E-06 29.1 11.1 111 130-251 30-146 (269)
142 COG4987 CydC ABC-type transpor 95.3 0.11 2.9E-06 31.9 7.5 116 131-246 353-510 (573)
143 CHL00095 clpC Clp protease ATP 95.3 0.28 7.2E-06 29.1 15.0 126 130-258 186-360 (823)
144 TIGR02236 recomb_radA DNA repa 95.3 0.087 2.2E-06 32.7 6.9 110 124-236 77-223 (333)
145 PRK10818 cell division inhibit 95.3 0.026 6.7E-07 36.3 4.2 47 142-193 114-160 (270)
146 cd02037 MRP-like MRP (Multiple 95.3 0.025 6.4E-07 36.4 4.1 37 145-181 3-39 (169)
147 cd02034 CooC The accessory pro 95.3 0.026 6.7E-07 36.3 4.2 45 145-191 2-46 (116)
148 PRK13636 cbiO cobalt transport 95.3 0.11 2.9E-06 31.9 7.5 33 130-162 20-52 (285)
149 PRK13651 cobalt transporter AT 95.3 0.29 7.4E-06 29.0 10.4 34 129-162 20-53 (304)
150 PRK13648 cbiO cobalt transport 95.3 0.15 3.9E-06 30.9 8.1 123 131-255 24-192 (269)
151 cd01983 Fer4_NifH The Fer4_Nif 95.3 0.024 6.2E-07 36.5 4.0 33 145-177 2-34 (99)
152 PRK13541 cytochrome c biogenes 95.3 0.13 3.3E-06 31.5 7.6 108 135-243 19-156 (195)
153 cd03293 ABC_NrtD_SsuB_transpor 95.3 0.17 4.3E-06 30.7 8.2 113 129-243 17-164 (220)
154 cd03232 ABC_PDR_domain2 The pl 95.2 0.04 1E-06 35.0 5.0 118 129-253 20-156 (192)
155 cd03261 ABC_Org_Solvent_Resist 95.2 0.22 5.5E-06 29.9 8.7 125 129-255 13-186 (235)
156 PRK11248 tauB taurine transpor 95.2 0.17 4.3E-06 30.6 8.2 125 129-255 14-178 (255)
157 TIGR03415 ABC_choXWV_ATP choli 95.2 0.2 5.1E-06 30.2 8.5 123 131-255 39-214 (382)
158 PRK09452 potA putrescine/sperm 95.2 0.17 4.3E-06 30.6 8.1 126 128-255 29-197 (378)
159 KOG1434 consensus 95.2 0.029 7.3E-07 36.0 4.2 139 122-264 94-257 (335)
160 PRK13549 xylose transporter AT 95.2 0.066 1.7E-06 33.5 6.0 123 130-252 276-452 (513)
161 pfam03266 DUF265 Protein of un 95.2 0.028 7.1E-07 36.1 4.1 90 145-236 2-103 (168)
162 PRK13644 cbiO cobalt transport 95.2 0.13 3.2E-06 31.6 7.4 124 125-252 11-183 (274)
163 PRK00440 rfc replication facto 95.1 0.14 3.6E-06 31.2 7.6 107 145-253 40-157 (318)
164 PRK06731 flhF flagellar biosyn 95.1 0.32 8.2E-06 28.7 12.7 87 143-240 76-166 (270)
165 pfam06564 YhjQ YhjQ protein. T 95.1 0.033 8.4E-07 35.6 4.2 37 144-180 4-40 (244)
166 TIGR02655 circ_KaiC circadian 95.1 0.053 1.3E-06 34.2 5.3 105 125-236 3-129 (484)
167 cd03222 ABC_RNaseL_inhibitor T 95.1 0.095 2.4E-06 32.4 6.6 104 129-255 13-121 (177)
168 PRK13631 cbiO cobalt transport 95.1 0.33 8.4E-06 28.7 9.8 112 129-243 39-209 (320)
169 PRK13632 cbiO cobalt transport 95.1 0.17 4.2E-06 30.7 7.8 121 131-254 25-192 (273)
170 PRK05541 adenylylsulfate kinas 95.1 0.22 5.5E-06 29.9 8.4 96 140-252 5-100 (176)
171 PRK13650 cbiO cobalt transport 95.1 0.22 5.5E-06 29.9 8.3 120 130-254 18-186 (276)
172 PRK08084 DNA replication initi 95.0 0.2 5E-06 30.2 8.0 105 141-249 44-157 (235)
173 COG1131 CcmA ABC-type multidru 95.0 0.13 3.4E-06 31.4 7.1 126 129-255 18-186 (293)
174 PRK11000 maltose/maltodextrin 95.0 0.16 4.1E-06 30.8 7.5 126 128-255 15-183 (369)
175 PRK11784 tRNA 2-selenouridine 95.0 0.12 3E-06 31.8 6.8 68 123-191 118-196 (333)
176 cd03217 ABC_FeS_Assembly ABC-t 95.0 0.031 7.9E-07 35.8 3.8 114 129-242 13-136 (200)
177 pfam00006 ATP-synt_ab ATP synt 95.0 0.033 8.4E-07 35.6 4.0 43 127-170 1-43 (213)
178 COG4604 CeuD ABC-type enteroch 95.0 0.13 3.4E-06 31.4 7.1 93 132-227 17-124 (252)
179 PRK10522 multidrug transporter 95.0 0.096 2.5E-06 32.4 6.3 112 132-243 339-482 (547)
180 PRK13645 cbiO cobalt transport 95.0 0.36 9.1E-06 28.4 9.8 128 125-255 20-200 (289)
181 TIGR03018 pepcterm_TyrKin exop 95.0 0.027 6.9E-07 36.2 3.4 45 144-188 38-83 (207)
182 PRK13695 putative NTPase; Prov 94.9 0.033 8.5E-07 35.6 3.8 38 145-182 6-44 (174)
183 PRK10982 galactose/methyl gala 94.9 0.22 5.6E-06 29.9 8.0 123 131-253 263-439 (491)
184 PRK13538 cytochrome c biogenes 94.9 0.21 5.5E-06 29.9 8.0 113 131-243 16-162 (204)
185 PRK04195 replication factor C 94.9 0.37 9.3E-06 28.3 10.5 105 143-254 41-159 (403)
186 PRK13634 cbiO cobalt transport 94.9 0.37 9.4E-06 28.3 9.7 113 126-242 4-164 (276)
187 PRK11308 dppF dipeptide transp 94.9 0.25 6.5E-06 29.4 8.3 111 129-242 28-186 (327)
188 PRK13638 cbiO cobalt transport 94.9 0.2 5.2E-06 30.1 7.8 121 129-254 14-185 (271)
189 PRK00889 adenylylsulfate kinas 94.9 0.25 6.4E-06 29.5 8.2 93 139-251 1-97 (175)
190 PRK09112 DNA polymerase III su 94.9 0.3 7.6E-06 28.9 8.6 26 143-168 46-71 (352)
191 cd03292 ABC_FtsE_transporter F 94.9 0.17 4.3E-06 30.7 7.3 114 126-244 11-170 (214)
192 PRK09270 frcK putative fructos 94.9 0.076 1.9E-06 33.1 5.5 40 140-179 32-73 (230)
193 PRK06851 hypothetical protein; 94.8 0.056 1.4E-06 34.0 4.8 58 125-184 199-257 (368)
194 PRK11288 araG L-arabinose tran 94.8 0.22 5.7E-06 29.8 7.8 99 138-242 275-428 (501)
195 TIGR03420 DnaA_homol_Hda DnaA 94.8 0.39 1E-05 28.1 9.2 51 132-183 29-79 (226)
196 PRK13230 nitrogenase reductase 94.8 0.043 1.1E-06 34.8 4.1 39 217-256 248-286 (292)
197 PRK11607 potG putrescine trans 94.8 0.19 4.8E-06 30.3 7.4 125 128-254 31-198 (377)
198 PRK04040 adenylate kinase; Pro 94.8 0.11 2.9E-06 31.9 6.3 21 171-191 110-130 (189)
199 pfam01637 Arch_ATPase Archaeal 94.8 0.28 7.1E-06 29.1 8.2 45 142-186 20-65 (223)
200 COG3839 MalK ABC-type sugar tr 94.8 0.4 1E-05 28.1 9.2 107 132-241 19-164 (338)
201 PRK11701 phnK phosphonates tra 94.8 0.24 6.1E-06 29.6 7.9 126 129-255 19-201 (258)
202 PRK13643 cbiO cobalt transport 94.7 0.41 1E-05 28.0 9.8 114 125-242 15-176 (288)
203 cd03300 ABC_PotA_N PotA is an 94.7 0.35 9E-06 28.4 8.7 122 129-255 13-180 (232)
204 cd03231 ABC_CcmA_heme_exporter 94.7 0.33 8.5E-06 28.6 8.5 108 131-243 15-158 (201)
205 PRK06851 hypothetical protein; 94.7 0.41 1.1E-05 27.9 12.2 16 237-252 342-357 (368)
206 PRK12724 flagellar biosynthesi 94.7 0.34 8.6E-06 28.6 8.5 87 141-242 222-313 (432)
207 pfam05729 NACHT NACHT domain. 94.7 0.042 1.1E-06 34.8 3.9 26 144-169 2-27 (165)
208 COG0489 Mrp ATPases involved i 94.7 0.052 1.3E-06 34.3 4.3 44 144-187 60-103 (265)
209 COG2894 MinD Septum formation 94.7 0.17 4.3E-06 30.7 6.9 33 147-179 8-40 (272)
210 PRK10908 cell division protein 94.7 0.23 6E-06 29.7 7.6 112 128-243 14-170 (222)
211 TIGR02546 III_secr_ATP type II 94.7 0.034 8.6E-07 35.5 3.3 96 124-226 136-262 (430)
212 cd03237 ABC_RNaseL_inhibitor_d 94.7 0.43 1.1E-05 27.9 9.5 120 136-255 19-165 (246)
213 PRK12402 replication factor C 94.6 0.2 5.1E-06 30.2 7.2 22 145-166 39-60 (337)
214 PRK06893 DNA replication initi 94.6 0.3 7.6E-06 28.9 8.1 105 142-250 39-152 (229)
215 PRK13543 cytochrome c biogenes 94.6 0.44 1.1E-05 27.8 10.0 110 129-243 24-170 (214)
216 cd03111 CpaE_like This protein 94.6 0.055 1.4E-06 34.1 4.3 41 144-184 2-43 (106)
217 PHA02518 ParA-like protein; Pr 94.6 0.062 1.6E-06 33.7 4.5 25 152-176 11-35 (211)
218 PRK13647 cbiO cobalt transport 94.6 0.25 6.4E-06 29.5 7.6 123 126-253 15-186 (273)
219 PRK11300 livG leucine/isoleuci 94.5 0.22 5.6E-06 29.9 7.2 123 128-255 17-203 (255)
220 COG4088 Predicted nucleotide k 94.5 0.032 8.2E-07 35.7 3.0 63 174-262 182-244 (261)
221 cd01132 F1_ATPase_alpha F1 ATP 94.5 0.043 1.1E-06 34.8 3.6 60 124-184 52-111 (274)
222 PRK13633 cobalt transporter AT 94.5 0.21 5.3E-06 30.0 7.1 120 130-254 25-194 (281)
223 cd03251 ABCC_MsbA MsbA is an e 94.5 0.14 3.4E-06 31.3 6.1 112 131-244 17-172 (234)
224 pfam00772 DnaB DnaB-like helic 94.5 0.048 1.2E-06 34.5 3.8 40 4-44 61-103 (103)
225 cd03271 ABC_UvrA_II The excisi 94.5 0.4 1E-05 28.0 8.5 45 209-253 168-220 (261)
226 PRK06315 type III secretion sy 94.5 0.042 1.1E-06 34.9 3.5 59 124-183 147-205 (442)
227 cd03290 ABCC_SUR1_N The SUR do 94.5 0.11 2.9E-06 31.9 5.6 117 126-242 11-172 (218)
228 COG0378 HypB Ni2+-binding GTPa 94.5 0.22 5.7E-06 29.8 7.1 79 144-229 15-93 (202)
229 PRK10744 phosphate transporter 94.4 0.22 5.6E-06 29.9 7.0 124 129-252 23-200 (257)
230 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.4 0.23 5.8E-06 29.7 7.1 115 128-243 34-175 (224)
231 PRK10490 sensor protein KdpD; 94.4 0.4 1E-05 28.0 8.3 53 142-194 607-672 (895)
232 PRK10575 iron-hydroxamate tran 94.4 0.24 6.2E-06 29.6 7.2 124 129-255 24-197 (265)
233 COG0003 ArsA Predicted ATPase 94.4 0.064 1.6E-06 33.6 4.2 10 34-43 73-82 (322)
234 TIGR03269 met_CoM_red_A2 methy 94.4 0.49 1.2E-05 27.4 9.5 113 130-242 298-459 (520)
235 pfam02702 KdpD Osmosensitive K 94.4 0.1 2.6E-06 32.2 5.2 54 140-193 2-56 (211)
236 cd03234 ABCG_White The White s 94.3 0.15 3.9E-06 31.0 6.1 124 129-254 20-192 (226)
237 PRK11231 fecE iron-dicitrate t 94.3 0.26 6.7E-06 29.3 7.3 109 129-242 15-170 (255)
238 PRK11629 lolD lipoprotein tran 94.3 0.5 1.3E-05 27.4 10.3 111 131-244 24-179 (233)
239 PRK08903 hypothetical protein; 94.3 0.15 3.9E-06 31.0 6.0 54 131-184 31-84 (227)
240 PRK09281 F0F1 ATP synthase sub 94.3 0.11 2.7E-06 32.0 5.3 54 124-178 145-198 (502)
241 PRK10584 putative ABC transpor 94.3 0.37 9.6E-06 28.2 8.0 123 129-255 23-196 (228)
242 KOG0061 consensus 94.3 0.32 8.1E-06 28.7 7.6 124 131-254 45-219 (613)
243 pfam01583 APS_kinase Adenylyls 94.3 0.32 8.2E-06 28.7 7.6 95 142-252 2-96 (157)
244 cd02117 NifH_like This family 94.3 0.06 1.5E-06 33.8 3.9 35 145-179 3-37 (212)
245 PRK13652 cbiO cobalt transport 94.3 0.33 8.4E-06 28.6 7.7 123 128-255 16-187 (277)
246 PRK08727 hypothetical protein; 94.3 0.51 1.3E-05 27.3 9.1 106 141-250 40-153 (233)
247 PRK07165 F0F1 ATP synthase sub 94.3 0.1 2.6E-06 32.2 5.0 61 124-185 126-186 (507)
248 PRK13869 plasmid-partitioning 94.3 0.045 1.2E-06 34.6 3.2 38 143-180 122-160 (405)
249 CHL00131 ycf16 sulfate ABC tra 94.2 0.19 4.7E-06 30.4 6.2 124 129-253 19-198 (252)
250 PRK10037 cell division protein 94.2 0.076 1.9E-06 33.1 4.2 35 144-178 4-38 (250)
251 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.1 0.55 1.4E-05 27.1 8.8 123 129-254 17-189 (218)
252 PTZ00243 ABC transporter; Prov 94.1 0.24 6E-06 29.7 6.7 26 139-164 1333-1358(1560)
253 cd02023 UMPK Uridine monophosp 94.1 0.069 1.8E-06 33.4 3.9 33 144-178 1-33 (198)
254 COG1122 CbiO ABC-type cobalt t 94.1 0.19 4.8E-06 30.3 6.1 111 130-242 18-170 (235)
255 cd03254 ABCC_Glucan_exporter_l 94.1 0.56 1.4E-05 27.0 9.4 112 130-243 17-172 (229)
256 cd03259 ABC_Carb_Solutes_like 94.1 0.39 1E-05 28.1 7.7 124 128-254 12-179 (213)
257 cd03294 ABC_Pro_Gly_Bertaine T 94.1 0.27 6.9E-06 29.2 6.9 125 129-255 37-210 (269)
258 PRK05642 DNA replication initi 94.1 0.57 1.4E-05 27.0 10.7 38 143-180 46-83 (234)
259 CHL00059 atpA ATP synthase CF1 94.0 0.077 2E-06 33.0 4.0 56 124-180 146-201 (501)
260 TIGR00763 lon ATP-dependent pr 94.0 0.067 1.7E-06 33.5 3.7 77 138-235 445-524 (941)
261 cd03295 ABC_OpuCA_Osmoprotecti 94.0 0.48 1.2E-05 27.5 8.0 124 128-254 13-184 (242)
262 cd03296 ABC_CysA_sulfate_impor 94.0 0.38 9.6E-06 28.2 7.5 125 128-254 14-185 (239)
263 COG1474 CDC6 Cdc6-related prot 94.0 0.59 1.5E-05 26.9 8.7 94 132-235 33-130 (366)
264 cd03260 ABC_PstB_phosphate_tra 94.0 0.39 9.9E-06 28.1 7.5 121 129-253 13-189 (227)
265 TIGR00750 lao LAO/AO transport 93.9 0.12 2.9E-06 31.8 4.7 42 141-182 37-78 (333)
266 KOG1806 consensus 93.9 0.17 4.3E-06 30.7 5.6 84 128-219 740-826 (1320)
267 PRK08927 fliI flagellum-specif 93.8 0.086 2.2E-06 32.7 4.0 43 124-167 141-183 (441)
268 cd02027 APSK Adenosine 5'-phos 93.8 0.56 1.4E-05 27.0 8.2 91 145-251 2-92 (149)
269 cd03256 ABC_PhnC_transporter A 93.8 0.63 1.6E-05 26.7 9.5 126 126-254 11-193 (241)
270 cd02025 PanK Pantothenate kina 93.8 0.16 4.2E-06 30.8 5.4 45 144-188 1-50 (220)
271 PRK10261 glutathione transport 93.8 0.64 1.6E-05 26.7 8.6 109 131-242 339-495 (623)
272 PHA02519 plasmid partition pro 93.8 0.062 1.6E-06 33.7 3.1 34 144-177 106-142 (387)
273 PRK11819 putative ABC transpor 93.7 0.22 5.7E-06 29.8 5.9 114 132-251 340-488 (556)
274 PRK13705 plasmid-partitioning 93.7 0.062 1.6E-06 33.7 3.0 29 149-177 114-142 (388)
275 cd03248 ABCC_TAP TAP, the Tran 93.7 0.2 5.1E-06 30.2 5.6 113 130-244 28-184 (226)
276 PRK09984 phosphonate/organopho 93.7 0.66 1.7E-05 26.5 8.8 123 128-255 16-202 (262)
277 PRK13539 cytochrome c biogenes 93.7 0.66 1.7E-05 26.5 8.2 113 130-243 16-159 (206)
278 TIGR03324 alt_F1F0_F1_al alter 93.6 0.12 3.1E-06 31.6 4.5 59 123-182 144-202 (497)
279 cd03278 ABC_SMC_barmotin Barmo 93.6 0.68 1.7E-05 26.4 8.6 108 127-243 7-150 (197)
280 PRK13646 cbiO cobalt transport 93.6 0.68 1.7E-05 26.4 9.8 123 129-254 20-194 (286)
281 PRK11831 putative ABC transpor 93.6 0.68 1.7E-05 26.4 8.9 123 129-254 21-193 (269)
282 TIGR03269 met_CoM_red_A2 methy 93.6 0.68 1.7E-05 26.4 8.5 34 209-242 167-200 (520)
283 COG4608 AppF ABC-type oligopep 93.6 0.48 1.2E-05 27.5 7.4 122 129-253 26-153 (268)
284 cd03250 ABCC_MRP_domain1 Domai 93.6 0.3 7.8E-06 28.9 6.4 113 130-244 19-161 (204)
285 cd01135 V_A-ATPase_B V/A-type 93.5 0.066 1.7E-06 33.5 3.0 44 124-168 52-95 (276)
286 PRK13546 teichoic acids export 93.5 0.55 1.4E-05 27.1 7.6 112 128-242 36-175 (264)
287 TIGR03453 partition_RepA plasm 93.5 0.7 1.8E-05 26.4 10.2 38 143-180 105-143 (387)
288 PRK13768 GTPase; Provisional 93.5 0.11 2.8E-06 31.9 4.1 41 126-166 115-155 (253)
289 PRK10619 histidine/lysine/argi 93.5 0.71 1.8E-05 26.3 9.0 123 129-254 18-201 (257)
290 PRK13343 F0F1 ATP synthase sub 93.5 0.063 1.6E-06 33.7 2.8 46 124-170 145-190 (502)
291 PRK09473 oppD oligopeptide tra 93.5 0.63 1.6E-05 26.7 7.9 124 129-255 29-211 (330)
292 PRK13639 cbiO cobalt transport 93.4 0.51 1.3E-05 27.3 7.4 113 128-242 14-169 (275)
293 cd03235 ABC_Metallic_Cations A 93.4 0.72 1.8E-05 26.3 8.7 120 129-253 12-180 (213)
294 PRK11670 putative ATPase; Prov 93.4 0.12 3.1E-06 31.6 4.2 39 143-181 108-147 (369)
295 PRK10787 DNA-binding ATP-depen 93.4 0.12 3E-06 31.8 4.1 39 138-179 345-383 (784)
296 PRK09700 D-allose transporter 93.4 0.7 1.8E-05 26.3 8.0 125 129-253 276-457 (510)
297 TIGR02640 gas_vesic_GvpN gas v 93.4 0.076 1.9E-06 33.1 3.1 40 144-186 23-64 (265)
298 cd03224 ABC_TM1139_LivF_branch 93.4 0.27 6.9E-06 29.2 5.9 119 129-252 13-179 (222)
299 PRK10247 putative ABC transpor 93.4 0.74 1.9E-05 26.2 10.4 110 131-244 22-171 (225)
300 cd03229 ABC_Class3 This class 93.3 0.14 3.5E-06 31.3 4.3 124 129-255 13-150 (178)
301 cd03369 ABCC_NFT1 Domain 2 of 93.2 0.26 6.6E-06 29.4 5.6 114 130-244 22-159 (207)
302 PRK11614 livF leucine/isoleuci 93.2 0.28 7.3E-06 29.1 5.8 119 129-252 18-184 (237)
303 PRK13649 cbiO cobalt transport 93.2 0.79 2E-05 26.0 8.7 110 130-242 21-177 (280)
304 PRK13542 consensus 93.2 0.78 2E-05 26.0 8.0 113 130-243 32-180 (224)
305 PRK11153 metN DL-methionine tr 93.1 0.8 2E-05 25.9 8.7 126 128-255 17-190 (343)
306 COG1192 Soj ATPases involved i 93.1 0.16 4E-06 30.9 4.3 18 141-158 119-136 (259)
307 cd03291 ABCC_CFTR1 The CFTR su 93.1 0.2 5E-06 30.2 4.8 116 128-245 49-194 (282)
308 COG4133 CcmA ABC-type transpor 93.1 0.5 1.3E-05 27.4 6.9 104 138-242 24-162 (209)
309 PRK13232 nifH nitrogenase redu 93.1 0.15 3.8E-06 31.0 4.2 29 217-246 235-263 (273)
310 PRK10895 putative ABC transpor 93.0 0.84 2.1E-05 25.8 7.9 110 128-242 15-169 (241)
311 cd03288 ABCC_SUR2 The SUR doma 93.0 0.21 5.4E-06 30.0 4.8 113 131-244 36-190 (257)
312 PRK13540 cytochrome c biogenes 93.0 0.84 2.1E-05 25.8 8.8 108 130-243 15-160 (200)
313 cd03265 ABC_DrrA DrrA is the A 92.9 0.54 1.4E-05 27.2 6.9 128 128-256 12-182 (220)
314 PRK10636 putative ABC transpor 92.9 0.34 8.7E-06 28.5 5.8 112 132-246 328-468 (638)
315 cd03299 ABC_ModC_like Archeal 92.9 0.86 2.2E-05 25.7 9.0 121 132-255 15-179 (235)
316 PRK10938 putative molybdenum t 92.9 0.86 2.2E-05 25.7 10.8 105 132-242 276-433 (490)
317 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.9 0.23 5.9E-06 29.7 4.9 89 131-243 15-103 (144)
318 pfam03308 ArgK ArgK protein. T 92.9 0.28 7.1E-06 29.1 5.4 40 142-181 29-68 (267)
319 cd03257 ABC_NikE_OppD_transpor 92.9 0.45 1.1E-05 27.7 6.4 127 129-255 18-195 (228)
320 PRK10851 sulfate/thiosulfate t 92.9 0.65 1.7E-05 26.6 7.2 121 130-255 16-186 (352)
321 PRK05506 bifunctional sulfate 92.9 0.87 2.2E-05 25.7 8.5 110 127-252 428-537 (613)
322 PRK11432 fbpC ferric transport 92.8 0.88 2.2E-05 25.7 8.5 112 129-242 19-168 (351)
323 cd03289 ABCC_CFTR2 The CFTR su 92.8 0.37 9.4E-06 28.3 5.9 115 129-245 17-173 (275)
324 COG0455 flhG Antiactivator of 92.8 0.88 2.3E-05 25.6 10.1 37 143-184 114-150 (262)
325 PRK10762 D-ribose transporter 92.8 0.89 2.3E-05 25.6 8.0 122 131-252 267-442 (501)
326 TIGR00960 3a0501s02 Type II (G 92.8 0.11 2.7E-06 32.1 3.1 119 124-246 10-174 (216)
327 PRK10419 nikE nickel transport 92.8 0.9 2.3E-05 25.6 10.0 124 129-255 25-201 (266)
328 TIGR00955 3a01204 Pigment prec 92.8 0.9 2.3E-05 25.6 8.7 121 125-246 40-211 (671)
329 TIGR03258 PhnT 2-aminoethylpho 92.8 0.9 2.3E-05 25.6 8.3 120 129-250 18-178 (362)
330 COG0563 Adk Adenylate kinase a 92.7 0.62 1.6E-05 26.7 7.0 96 145-253 3-102 (178)
331 PRK11174 cysteine/glutathione 92.7 0.35 9E-06 28.4 5.7 115 130-244 364-519 (588)
332 cd02042 ParA ParA and ParB of 92.7 0.19 4.9E-06 30.3 4.3 36 146-181 4-39 (104)
333 PRK11022 dppD dipeptide transp 92.6 0.93 2.4E-05 25.5 8.2 111 129-242 20-185 (327)
334 cd03269 ABC_putative_ATPase Th 92.6 0.76 1.9E-05 26.1 7.3 123 129-252 13-175 (210)
335 PRK06761 hypothetical protein; 92.6 0.17 4.3E-06 30.6 3.9 22 225-246 246-269 (281)
336 pfam07728 AAA_5 AAA domain (dy 92.6 0.12 3E-06 31.7 3.1 43 145-189 2-46 (139)
337 cd03301 ABC_MalK_N The N-termi 92.6 0.95 2.4E-05 25.4 7.8 123 130-254 14-179 (213)
338 PRK12727 flagellar biosynthesi 92.5 0.96 2.5E-05 25.4 13.7 92 139-244 345-442 (557)
339 pfam00931 NB-ARC NB-ARC domain 92.5 0.63 1.6E-05 26.7 6.8 41 182-222 180-220 (285)
340 cd03252 ABCC_Hemolysin The ABC 92.5 0.25 6.4E-06 29.5 4.7 115 128-244 14-172 (237)
341 cd03218 ABC_YhbG The ABC trans 92.5 0.4 1E-05 28.1 5.7 121 128-251 12-179 (232)
342 PRK13641 cbiO cobalt transport 92.5 0.97 2.5E-05 25.4 9.4 32 131-162 22-53 (286)
343 PRK09536 btuD corrinoid ABC tr 92.5 0.68 1.7E-05 26.4 6.9 124 129-252 15-185 (409)
344 TIGR03498 FliI_clade3 flagella 92.5 0.14 3.6E-06 31.2 3.4 43 124-167 123-165 (418)
345 TIGR03608 L_ocin_972_ABC putat 92.5 0.75 1.9E-05 26.2 7.1 110 131-244 13-168 (206)
346 pfam09848 DUF2075 Uncharacteri 92.4 0.42 1.1E-05 27.9 5.8 20 228-251 188-207 (348)
347 PRK09544 znuC high-affinity zi 92.4 0.44 1.1E-05 27.8 5.8 126 130-255 18-170 (251)
348 TIGR02673 FtsE cell division A 92.4 0.069 1.8E-06 33.4 1.7 116 124-244 10-171 (215)
349 PRK10762 D-ribose transporter 92.4 1 2.6E-05 25.3 9.8 32 131-162 19-50 (501)
350 KOG0054 consensus 92.3 0.8 2E-05 26.0 7.1 23 140-162 1164-1186(1381)
351 KOG2825 consensus 92.3 0.1 2.6E-06 32.2 2.5 19 175-193 190-209 (323)
352 COG0541 Ffh Signal recognition 92.3 1 2.6E-05 25.2 15.9 104 141-252 99-208 (451)
353 PRK11247 ssuB aliphatic sulfon 92.3 1 2.6E-05 25.2 9.3 123 130-255 26-183 (257)
354 KOG0733 consensus 92.2 0.46 1.2E-05 27.6 5.7 29 138-166 219-247 (802)
355 PRK13849 putative crown gall t 92.2 0.25 6.4E-06 29.5 4.4 34 146-179 6-39 (231)
356 cd03267 ABC_NatA_like Similar 92.2 1 2.6E-05 25.2 7.5 127 128-255 33-203 (236)
357 TIGR00635 ruvB Holliday juncti 92.2 0.12 3E-06 31.7 2.7 64 144-226 32-100 (305)
358 KOG0057 consensus 92.1 0.63 1.6E-05 26.7 6.4 106 139-244 375-521 (591)
359 cd01136 ATPase_flagellum-secre 92.1 0.11 2.9E-06 31.9 2.6 43 124-167 52-94 (326)
360 PRK09700 D-allose transporter 92.1 0.47 1.2E-05 27.6 5.7 21 173-193 292-312 (510)
361 PRK10253 iron-enterobactin tra 92.1 0.84 2.1E-05 25.8 7.0 122 128-254 19-192 (265)
362 PRK09435 arginine/ornithine tr 92.1 0.34 8.5E-06 28.6 4.9 38 144-181 51-88 (325)
363 pfam07015 VirC1 VirC1 protein. 92.1 0.24 6E-06 29.6 4.2 15 139-153 103-117 (231)
364 KOG1942 consensus 92.1 0.16 4E-06 30.9 3.2 50 141-191 63-118 (456)
365 cd01131 PilT Pilus retraction 92.0 0.24 6.1E-06 29.6 4.1 40 144-184 3-42 (198)
366 pfam00485 PRK Phosphoribulokin 92.0 0.16 4E-06 30.9 3.2 29 144-172 1-29 (196)
367 COG1132 MdlB ABC-type multidru 92.0 0.9 2.3E-05 25.6 7.0 120 124-243 333-498 (567)
368 cd03114 ArgK-like The function 92.0 0.2 5.1E-06 30.2 3.7 100 145-245 2-108 (148)
369 cd02032 Bchl_like This family 92.0 0.22 5.7E-06 29.8 3.9 64 124-194 99-164 (267)
370 TIGR02902 spore_lonB ATP-depen 91.9 0.18 4.5E-06 30.5 3.3 72 117-190 62-139 (532)
371 PRK07594 type III secretion sy 91.9 0.17 4.3E-06 30.7 3.2 42 124-166 138-179 (433)
372 PRK09493 glnQ glutamine ABC tr 91.9 1.1 2.9E-05 24.9 9.1 109 130-242 15-168 (240)
373 PRK10463 hydrogenase nickel in 91.9 0.67 1.7E-05 26.5 6.3 87 145-239 107-196 (290)
374 cd03249 ABC_MTABC3_MDL1_MDL2 M 91.9 0.49 1.3E-05 27.4 5.6 113 130-244 17-173 (238)
375 pfam03029 ATP_bind_1 Conserved 91.9 0.18 4.5E-06 30.5 3.3 11 216-226 190-200 (234)
376 PRK10789 putative multidrug tr 91.8 1.2 2.9E-05 24.8 7.6 113 131-244 330-485 (569)
377 cd03244 ABCC_MRP_domain2 Domai 91.8 1.1 2.9E-05 24.9 7.3 114 130-244 18-173 (221)
378 COG3854 SpoIIIAA ncharacterize 91.7 0.25 6.4E-06 29.5 3.9 39 139-177 133-177 (308)
379 PRK07960 fliI flagellum-specif 91.7 0.17 4.3E-06 30.7 3.0 58 123-182 157-214 (455)
380 PRK12723 flagellar biosynthesi 91.7 1.2 3.1E-05 24.7 11.9 88 142-243 174-269 (388)
381 cd02030 NDUO42 NADH:Ubiquinone 91.7 0.48 1.2E-05 27.5 5.3 19 172-190 143-161 (219)
382 PRK07721 fliI flagellum-specif 91.6 0.18 4.5E-06 30.5 3.1 58 124-183 139-196 (435)
383 pfam07088 GvpD GvpD gas vesicl 91.6 0.073 1.9E-06 33.2 1.1 61 123-183 238-303 (484)
384 cd03266 ABC_NatA_sodium_export 91.6 0.51 1.3E-05 27.3 5.4 115 127-242 16-168 (218)
385 PRK06793 fliI flagellum-specif 91.6 0.15 3.9E-06 30.9 2.8 97 124-227 139-266 (432)
386 TIGR03410 urea_trans_UrtE urea 91.6 0.34 8.7E-06 28.5 4.5 123 129-255 13-181 (230)
387 cd03258 ABC_MetN_methionine_tr 91.6 1.2 3.1E-05 24.7 8.6 114 129-244 18-174 (233)
388 TIGR02928 TIGR02928 orc1/cdc6 91.6 1.2 3.1E-05 24.6 8.8 101 131-236 32-144 (383)
389 TIGR02982 heterocyst_DevA ABC 91.5 0.16 4E-06 30.9 2.7 101 138-242 27-173 (220)
390 PRK00090 bioD dithiobiotin syn 91.5 0.31 8E-06 28.8 4.2 18 180-197 176-193 (223)
391 PRK05922 type III secretion sy 91.5 0.13 3.4E-06 31.4 2.3 42 124-166 140-181 (434)
392 PRK13544 consensus 91.4 0.67 1.7E-05 26.5 5.9 112 131-243 16-159 (208)
393 cd03245 ABCC_bacteriocin_expor 91.4 0.77 2E-05 26.1 6.2 114 129-244 17-174 (220)
394 cd03226 ABC_cobalt_CbiO_domain 91.4 0.79 2E-05 26.0 6.2 111 128-243 12-159 (205)
395 PRK00091 miaA tRNA delta(2)-is 91.4 0.23 5.8E-06 29.8 3.4 19 172-190 190-208 (304)
396 PRK11147 ABC transporter ATPas 91.3 1.2 3.1E-05 24.7 7.0 105 132-239 335-469 (632)
397 cd03219 ABC_Mj1267_LivG_branch 91.2 0.71 1.8E-05 26.3 5.8 122 128-252 12-190 (236)
398 COG0464 SpoVK ATPases of the A 91.2 0.73 1.9E-05 26.2 5.9 28 138-165 272-299 (494)
399 PRK13233 nifH nitrogenase redu 91.2 0.29 7.3E-06 29.1 3.8 15 176-190 151-165 (275)
400 PRK08149 ATP synthase SpaL; Va 91.1 0.15 3.9E-06 31.0 2.3 43 124-167 133-175 (427)
401 PRK12339 2-phosphoglycerate ki 91.0 0.22 5.6E-06 29.9 3.1 14 178-191 125-139 (197)
402 KOG0065 consensus 91.0 0.11 2.8E-06 31.9 1.6 41 127-167 126-166 (1391)
403 TIGR03497 FliI_clade2 flagella 91.0 0.21 5.4E-06 30.0 3.0 56 124-181 120-175 (413)
404 PRK02362 ski2-like helicase; P 91.0 0.69 1.8E-05 26.4 5.6 24 217-240 465-488 (736)
405 cd03223 ABCD_peroxisomal_ALDP 91.0 0.16 4.1E-06 30.8 2.3 104 126-243 11-124 (166)
406 PRK11264 putative amino-acid A 90.9 1.3 3.4E-05 24.4 6.9 124 129-254 14-191 (248)
407 TIGR03496 FliI_clade1 flagella 90.8 0.16 4.1E-06 30.8 2.2 42 124-166 120-161 (411)
408 PRK13409 putative ATPase RIL; 90.7 1.5 3.8E-05 24.1 8.2 115 139-253 362-498 (590)
409 cd03298 ABC_ThiQ_thiamine_tran 90.7 0.82 2.1E-05 25.9 5.7 110 139-251 21-170 (211)
410 TIGR00174 miaA tRNA delta(2)-i 90.6 0.19 4.9E-06 30.3 2.5 21 171-191 185-206 (307)
411 PRK11664 ATP-dependent RNA hel 90.5 0.72 1.8E-05 26.3 5.3 10 139-148 529-538 (812)
412 PRK09099 type III secretion sy 90.5 0.16 4.1E-06 30.8 1.9 43 124-167 146-188 (441)
413 PRK06936 type III secretion sy 90.4 0.16 4.2E-06 30.8 2.0 44 124-168 145-188 (439)
414 TIGR01587 cas3_core CRISPR-ass 90.4 0.44 1.1E-05 27.8 4.2 51 144-194 1-61 (424)
415 PRK10535 macrolide transporter 90.4 1.6 4E-05 23.9 7.2 29 211-239 145-173 (648)
416 TIGR01968 minD_bact septum sit 90.4 0.41 1E-05 28.0 4.0 95 144-238 4-123 (272)
417 KOG3347 consensus 90.4 0.19 4.7E-06 30.4 2.2 22 144-165 9-30 (176)
418 KOG3022 consensus 90.3 0.43 1.1E-05 27.8 4.0 51 133-184 40-90 (300)
419 PRK06547 hypothetical protein; 90.3 0.31 8E-06 28.8 3.3 28 139-166 10-39 (184)
420 pfam05496 RuvB_N Holliday junc 90.3 0.25 6.4E-06 29.5 2.8 23 145-167 53-75 (234)
421 smart00487 DEXDc DEAD-like hel 90.2 0.83 2.1E-05 25.8 5.4 51 143-193 25-78 (201)
422 pfam06414 Zeta_toxin Zeta toxi 90.2 1.6 4.1E-05 23.8 9.8 24 143-166 13-36 (191)
423 PRK04196 V-type ATP synthase s 90.2 0.21 5.4E-06 30.0 2.4 44 124-168 126-169 (460)
424 TIGR00073 hypB hydrogenase acc 90.2 1.1 2.7E-05 25.1 6.0 77 147-231 39-115 (225)
425 PRK08472 fliI flagellum-specif 90.2 0.15 3.9E-06 30.9 1.7 43 124-167 141-183 (435)
426 cd03268 ABC_BcrA_bacitracin_re 90.2 0.57 1.4E-05 27.0 4.5 122 130-252 14-173 (208)
427 cd03225 ABC_cobalt_CbiO_domain 90.1 1.7 4.2E-05 23.8 10.5 121 130-253 15-182 (211)
428 TIGR02203 MsbA_lipidA lipid A 90.1 0.19 4.8E-06 30.3 2.1 114 126-239 372-530 (603)
429 pfam07726 AAA_3 ATPase family 90.1 0.35 9E-06 28.4 3.4 41 145-186 2-42 (131)
430 TIGR02746 TraC-F-type type-IV 90.1 0.67 1.7E-05 26.5 4.9 97 129-227 474-596 (900)
431 cd01129 PulE-GspE PulE/GspE Th 90.1 0.42 1.1E-05 27.9 3.8 54 130-187 70-123 (264)
432 pfam01580 FtsK_SpoIIIE FtsK/Sp 90.1 0.27 6.9E-06 29.2 2.8 49 123-171 18-67 (202)
433 TIGR01005 eps_transp_fam exopo 90.1 1.1 2.7E-05 25.1 5.9 62 130-191 549-611 (778)
434 PRK13185 chlL protochlorophyll 90.1 0.45 1.1E-05 27.7 3.9 24 171-194 143-166 (269)
435 PRK10418 nikD nickel transport 90.0 1 2.5E-05 25.3 5.7 124 129-255 16-190 (254)
436 PRK05480 uridine kinase; Provi 90.0 0.38 9.6E-06 28.2 3.5 34 143-178 7-40 (209)
437 COG0542 clpA ATP-binding subun 90.0 1.7 4.3E-05 23.7 10.7 126 129-257 176-351 (786)
438 TIGR03411 urea_trans_UrtD urea 90.0 0.95 2.4E-05 25.4 5.6 120 128-252 14-190 (242)
439 COG4615 PvdE ABC-type sideroph 89.9 0.73 1.8E-05 26.2 4.9 98 139-236 346-474 (546)
440 pfam00437 GSPII_E Type II/IV s 89.9 0.39 9.9E-06 28.1 3.5 29 140-168 137-165 (283)
441 PRK03839 putative kinase; Prov 89.9 0.32 8E-06 28.8 3.1 39 215-253 112-152 (180)
442 cd03236 ABC_RNaseL_inhibitor_d 89.9 1.7 4.4E-05 23.6 9.1 34 209-242 138-171 (255)
443 PRK11124 artP arginine transpo 89.9 1.7 4.4E-05 23.6 9.7 120 130-252 16-188 (242)
444 PRK06002 fliI flagellum-specif 89.9 0.51 1.3E-05 27.3 4.1 44 123-167 147-190 (450)
445 pfam02562 PhoH PhoH-like prote 89.8 0.54 1.4E-05 27.1 4.2 102 140-251 17-143 (205)
446 PRK03695 vitamin B12-transport 89.8 1.7 4.4E-05 23.6 7.3 105 132-242 13-162 (245)
447 COG0324 MiaA tRNA delta(2)-iso 89.7 0.33 8.5E-06 28.6 3.1 17 175-191 249-265 (308)
448 TIGR02315 ABC_phnC phosphonate 89.7 0.13 3.4E-06 31.3 1.0 43 125-167 11-53 (253)
449 COG0714 MoxR-like ATPases [Gen 89.7 0.98 2.5E-05 25.4 5.4 58 134-192 35-92 (329)
450 PHA00729 NTP-binding motif con 89.7 0.75 1.9E-05 26.1 4.9 29 137-168 15-43 (228)
451 PRK05632 phosphate acetyltrans 89.7 0.55 1.4E-05 27.1 4.1 115 129-249 249-384 (702)
452 PRK10771 thiQ thiamine transpo 89.6 0.97 2.5E-05 25.4 5.4 114 138-254 21-178 (233)
453 PRK12726 flagellar biosynthesi 89.6 0.63 1.6E-05 26.7 4.4 86 140-239 204-296 (407)
454 COG0486 ThdF Predicted GTPase 89.6 1.8 4.6E-05 23.5 9.5 26 139-164 214-239 (454)
455 PTZ00301 uridine kinase; Provi 89.6 0.62 1.6E-05 26.7 4.4 108 141-255 2-149 (210)
456 cd03112 CobW_like The function 89.5 1.8 4.5E-05 23.6 6.6 95 144-246 2-105 (158)
457 PRK13536 nodulation factor exp 89.4 1.8 4.7E-05 23.4 6.7 31 210-240 138-168 (306)
458 cd03263 ABC_subfamily_A The AB 89.4 1.9 4.8E-05 23.4 7.4 113 129-242 15-165 (220)
459 COG4988 CydD ABC-type transpor 89.3 0.87 2.2E-05 25.7 5.0 111 131-242 336-488 (559)
460 PRK07261 topology modulation p 89.3 0.51 1.3E-05 27.3 3.8 23 145-167 3-25 (171)
461 PRK10070 glycine betaine trans 89.3 1.9 4.8E-05 23.3 10.8 124 131-256 43-215 (400)
462 COG3973 Superfamily I DNA and 89.2 0.92 2.3E-05 25.5 5.0 68 125-193 210-283 (747)
463 COG0470 HolB ATPase involved i 89.2 1.4 3.5E-05 24.3 5.9 111 144-254 26-166 (325)
464 PRK04220 2-phosphoglycerate ki 89.2 0.39 9.8E-06 28.2 3.1 25 144-168 94-118 (306)
465 COG1102 Cmk Cytidylate kinase 89.1 0.2 5E-06 30.2 1.5 26 144-169 2-27 (179)
466 PRK13548 hmuV hemin importer A 89.0 2 5E-05 23.2 8.1 109 129-242 15-172 (257)
467 COG0488 Uup ATPase components 89.0 2 5E-05 23.2 7.5 126 124-249 326-480 (530)
468 PRK13342 recombination factor 89.0 0.58 1.5E-05 26.9 3.9 15 135-149 112-126 (417)
469 COG1703 ArgK Putative periplas 89.0 0.71 1.8E-05 26.3 4.3 41 143-183 52-92 (323)
470 pfam05707 Zot Zonular occluden 88.9 0.47 1.2E-05 27.6 3.3 41 144-185 2-44 (183)
471 COG3638 ABC-type phosphate/pho 88.9 1.1 2.8E-05 25.0 5.2 40 125-164 13-52 (258)
472 COG4778 PhnL ABC-type phosphon 88.9 0.9 2.3E-05 25.6 4.8 112 129-243 24-185 (235)
473 TIGR02545 ATP_syn_fliI flagell 88.9 0.31 8E-06 28.8 2.4 96 124-227 141-268 (439)
474 COG2074 2-phosphoglycerate kin 88.8 0.5 1.3E-05 27.4 3.4 36 134-169 81-116 (299)
475 PRK00254 ski2-like helicase; P 88.8 1.3 3.4E-05 24.4 5.6 12 219-230 456-467 (717)
476 TIGR01281 DPOR_bchL light-inde 88.7 0.32 8.1E-06 28.8 2.3 28 147-174 5-32 (275)
477 COG1120 FepC ABC-type cobalami 88.6 0.59 1.5E-05 26.8 3.7 124 131-255 17-188 (258)
478 pfam02367 UPF0079 Uncharacteri 88.6 0.78 2E-05 26.0 4.3 39 132-170 4-43 (123)
479 PRK08972 fliI flagellum-specif 88.4 0.31 8E-06 28.8 2.2 43 124-167 143-185 (440)
480 cd01882 BMS1 Bms1. Bms1 is an 88.4 0.86 2.2E-05 25.7 4.4 34 137-170 34-67 (225)
481 PRK08118 topology modulation p 88.3 0.45 1.1E-05 27.7 2.9 45 145-189 4-53 (167)
482 TIGR03167 tRNA_sel_U_synt tRNA 88.3 1.5 3.9E-05 24.0 5.6 69 122-191 102-187 (311)
483 PRK00300 gmk guanylate kinase; 88.3 0.52 1.3E-05 27.2 3.2 74 171-260 119-199 (208)
484 PRK13721 conjugal transfer ATP 88.3 1.3 3.2E-05 24.6 5.2 102 142-250 473-597 (864)
485 KOG0951 consensus 88.2 0.67 1.7E-05 26.5 3.7 33 139-171 322-354 (1674)
486 PRK00771 signal recognition pa 88.2 2.2 5.7E-05 22.9 16.8 90 142-239 97-188 (433)
487 COG2884 FtsE Predicted ATPase 88.2 0.63 1.6E-05 26.7 3.6 115 125-243 11-170 (223)
488 pfam04851 ResIII Type III rest 88.1 0.72 1.8E-05 26.3 3.8 42 145-189 21-62 (103)
489 COG1157 FliI Flagellar biosynt 88.1 0.36 9.2E-06 28.4 2.3 44 123-167 145-188 (441)
490 PRK05688 fliI flagellum-specif 88.0 0.38 9.6E-06 28.2 2.4 43 124-167 151-193 (451)
491 PRK07196 fliI flagellum-specif 87.9 0.32 8.2E-06 28.7 2.0 43 124-167 138-180 (434)
492 pfam05625 PAXNEB PAXNEB protei 87.8 0.73 1.8E-05 26.2 3.7 61 124-190 25-92 (353)
493 COG1419 FlhF Flagellar GTP-bin 87.6 1 2.6E-05 25.2 4.4 87 142-242 203-295 (407)
494 CHL00072 chlL photochlorophyll 87.6 0.81 2.1E-05 25.9 3.9 22 172-193 142-163 (271)
495 cd01130 VirB11-like_ATPase Typ 87.6 0.63 1.6E-05 26.7 3.3 31 139-169 22-52 (186)
496 pfam00004 AAA ATPase family as 87.5 0.46 1.2E-05 27.6 2.6 22 145-166 1-22 (131)
497 PRK06370 mercuric reductase; V 87.5 2.5 6.3E-05 22.6 6.7 33 138-176 167-199 (459)
498 PRK03992 proteasome-activating 87.4 1.8 4.6E-05 23.5 5.6 40 126-166 151-190 (390)
499 COG1204 Superfamily II helicas 87.4 1.4 3.7E-05 24.2 5.0 56 121-176 25-82 (766)
500 PRK09694 hypothetical protein; 87.4 0.99 2.5E-05 25.3 4.2 38 140-178 302-340 (878)
No 1
>PRK07773 replicative DNA helicase; Validated
Probab=100.00 E-value=0 Score=423.67 Aligned_cols=239 Identities=19% Similarity=0.340 Sum_probs=215.2
Q ss_pred HHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHH
Q ss_conf 9898630---057785689999984067636899999999999999999999999999985114--44234545899999
Q gi|254781149|r 5 IISHFES---QTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDP--TCNTATLIRKSMQS 79 (266)
Q Consensus 5 ~~~~le~---~~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~--~~~~~~~~~~~e~~ 79 (266)
|.++|++ ++++||..||.+|++.+|| ++|+.+|+++|+|++++|+++..+.++.+.+++. ..++.++++++|+.
T Consensus 68 V~~~L~~~g~L~~vGG~~YL~~L~~~vpS-aan~~~YA~IV~ekai~R~LI~~a~eI~~~ay~~~~~~dv~e~ld~AE~~ 146 (868)
T PRK07773 68 VAAELDRRGLLTRIGGAPYLHTLISTVPT-AANAGYYASIVAEKALLRRLVEAGTRIVQYGYAGAEGADVAEVVDRAQAE 146 (868)
T ss_pred HHHHHHHCCCHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99998546984544889999999871997-99999999999999999999999999999874177668999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
Q ss_conf 99999654431046655430116899999999999863-03666785111377777655301683688706874148899
Q gi|254781149|r 80 FEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQK-KEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTF 158 (266)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~ 158 (266)
++++... ....++..+.+.+.+.++.++... +.+..+||||||.+||++|+||+||+|||||||||||||+|
T Consensus 147 If~Ise~-------~~~~~~~~i~~~l~~a~~~ie~~~~~~~~l~GvpTG~~~ld~~~~g~~~~~l~i~a~rp~~GKt~~ 219 (868)
T PRK07773 147 IYDVTQR-------RPQEDFVALEDLLQPTMDEIDAIASSGGLAPGVPTGFYDLDEMTNGLHPGQMIIVAARPGVGKSTL 219 (868)
T ss_pred HHHHHHC-------CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHH
T ss_conf 9999725-------776776338999999999999998469998786889799987631888776799982897777789
Q ss_pred HHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 9999999630-223236411675348999999996302232347855501788998999999999999972995474799
Q gi|254781149|r 159 ALSTALHMAM-SGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRP 237 (266)
Q Consensus 159 alnia~~~a~-~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~ 237 (266)
++|||.|+|. ++.||+|||||||++|+++||+|+ .++|++.++|+|+|+++||.++..++++++++||||||+|
T Consensus 220 ~~~~a~~~a~~~~~~v~~FSLEMs~~ql~~Rlls~-----~~~i~~~~lr~G~l~~~~~~~~~~a~~~l~~~pl~IdDtp 294 (868)
T PRK07773 220 GLDFARSCSIRHRLASVIFSLEMSKEEIVMRLLSA-----EAKIKLSDMRSGRMSDDDWTRLARRMSEISEAPLFIDDSP 294 (868)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHH-----HCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECCC
T ss_conf 99999999986599658973056788999999987-----6078776641688898999999999999861988884799
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 8898999999999999947
Q gi|254781149|r 238 SPGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 238 ~~ti~~ira~aR~~k~k~~ 256 (266)
++|+.+||++||++|++|+
T Consensus 295 ~isi~eirakaRrlk~~~~ 313 (868)
T PRK07773 295 NLTMMEIRSKARRLQQKAN 313 (868)
T ss_pred CCCHHHHHHHHHHHHHCCC
T ss_conf 9999999999999865269
No 2
>PRK09165 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=413.73 Aligned_cols=240 Identities=28% Similarity=0.387 Sum_probs=210.6
Q ss_pred HHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHH
Q ss_conf 9898630---057785689999984067636899999999999999999999999999985114442--34545899999
Q gi|254781149|r 5 IISHFES---QTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPTCN--TATLIRKSMQS 79 (266)
Q Consensus 5 ~~~~le~---~~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~~~--~~~~~~~~e~~ 79 (266)
|.++|++ .+++||..||.+|+..+|+ ++|+.+|+++|+++|++|+++..+.++...+++...+ ..+.++.+++.
T Consensus 69 v~~~L~~~~~l~~vGG~~yL~~L~~~~~s-~an~~~Ya~iV~e~a~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~ae~~ 147 (484)
T PRK09165 69 LKTFLENDEALGELGGVQYLAKLATEAVT-IINARDYGRIIYDLALRRELIGIGEDIVNNAYDAPVDVAPKEQIEDAEQK 147 (484)
T ss_pred HHHHHHHCCCHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99998645872322779999999970887-77899999999888899999999999999973577676789999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
Q ss_conf 99999654431046655430116899999999999863-03666785111377777655301683688706874148899
Q gi|254781149|r 80 FEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQK-KEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTF 158 (266)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~ 158 (266)
++++... .....++..+.+.+.+.++.++... +.+...||||||++||++||||+||+|||||||||||||+|
T Consensus 148 l~~l~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~Gi~TGf~~LD~~t~G~~~GdLiIIAARPsmGKTaf 221 (484)
T PRK09165 148 LYELAET------GRYEGGFQSFGTAITEAVDMANAAFKRDGHLSGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTAL 221 (484)
T ss_pred HHHHHHC------CCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHCCCCCCCEEEEEECCCCCHHHH
T ss_conf 9999854------7678884159999999999999998379997733158445998715888773799960799977899
Q ss_pred HHHHHHHHHH---------------CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999630---------------2232364116753489999999963022323478555017889989999999999
Q gi|254781149|r 159 ALSTALHMAM---------------SGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGIC 223 (266)
Q Consensus 159 alnia~~~a~---------------~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~ 223 (266)
|+|||.|+|+ +|++|+|||||||.+|+++|++|+. ++|+..++++|.++++||.++..++
T Consensus 222 aLniA~n~A~~~~~~~~~~~~~~~~~g~~V~~FSLEMs~~ql~~Rlls~~-----s~V~~~~ir~g~l~~~e~~~i~~a~ 296 (484)
T PRK09165 222 ATNIAFNAAKAYLREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQ-----SEISSSKIRRGKISEEDFEKLVDAS 296 (484)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH-----HCCCHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999987410222233211368984899947799999999999997-----2686135544899999999999999
Q ss_pred HHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999729954747998898999999999999947
Q gi|254781149|r 224 EKLQDFPLIIDDRPSPGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 224 ~~l~~~pl~IdD~~~~ti~~ira~aR~~k~k~~ 256 (266)
++|.++||||||+|++||.+||++||++|++|+
T Consensus 297 ~~l~~~~l~IdD~~~~ti~~Ira~~Rr~k~~~g 329 (484)
T PRK09165 297 QELQKLPLYIDDTPALSISALRARARRLKRQHG 329 (484)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999719848977999879999999999998609
No 3
>PRK07004 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=409.26 Aligned_cols=244 Identities=21% Similarity=0.293 Sum_probs=210.4
Q ss_pred HHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
Q ss_conf 89898630---057785689999984067636899999999999999999999999999985114-44234545899999
Q gi|254781149|r 4 EIISHFES---QTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDP-TCNTATLIRKSMQS 79 (266)
Q Consensus 4 ~~~~~le~---~~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~-~~~~~~~~~~~e~~ 79 (266)
.|.+++++ .+++||..||.+|+..+|+ ++|+.+||++|++++.+|+++..+.++...++++ ..++.++++.++..
T Consensus 74 tv~~~L~~~~~l~~iGg~~yL~~L~~~~~s-~ani~~ya~iVke~~~~R~li~~~~~i~~~a~~~~~~d~~~il~~ae~~ 152 (460)
T PRK07004 74 TVYEALTTSGKAEEVGGLAYLNALAQNTPS-AANIRRYAEIVRDRAVLRRLVSVADEISADAFNPQGKEVRQLLDEAESK 152 (460)
T ss_pred HHHHHHHHCCCHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 999998425964542889999999973984-8999999999988999999999999999873288777899999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH---HHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHH
Q ss_conf 99999654431046655430116899999999999---863036667851113777776553016836887068741488
Q gi|254781149|r 80 FEDIISEVHLTKNQCTGSSCISIANAATTAMKSAE---QQKKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKT 156 (266)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKT 156 (266)
++++..+.. ....++.++.+.+.+.++..+ .....+..+||||||++||++|+||+||+|||||||||||||
T Consensus 153 l~~i~~~~~-----~~~~~~~~i~~~l~~~~e~ie~~~~~~~~~~~~Gi~TGf~~LD~~t~Gl~~gdLiIIAARPsmGKT 227 (460)
T PRK07004 153 VFSIAEEGA-----RGTQGFLEIGPLLTQVVERIDTLYHTANPSDVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKT 227 (460)
T ss_pred HHHHHHHCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHH
T ss_conf 999986156-----678760309999999999999999615999985386793889865238987757999736876426
Q ss_pred HHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 99999999963-02232364116753489999999963022323478555017889989999999999999729954747
Q gi|254781149|r 157 TFALSTALHMA-MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDD 235 (266)
Q Consensus 157 a~alnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD 235 (266)
+||+|+|.|+| .+|+||+|||||||.+|++.|++|+. ++|+..++++|+++++||.++..++++++++||||||
T Consensus 228 afAlniA~n~A~~~g~~V~~FSLEMs~eql~~Rlls~~-----s~I~~~~ir~g~l~~~e~~~i~~a~~~l~~~~l~IdD 302 (460)
T PRK07004 228 AFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSV-----GRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDE 302 (460)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHC-----CCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99999999998725886699847799999999999860-----6988211007889999999999999998559748968
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99889899999999999994799
Q gi|254781149|r 236 RPSPGIMEFVHVANGLRNKHTKM 258 (266)
Q Consensus 236 ~~~~ti~~ira~aR~~k~k~~~~ 258 (266)
+|++|+.+||++||++|++|+++
T Consensus 303 ~~~lt~~~ira~~Rr~~~~~g~l 325 (460)
T PRK07004 303 TGGLNPMELRSRARRLARQCGKL 325 (460)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 98730789999999999743588
No 4
>PRK05636 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=407.55 Aligned_cols=240 Identities=19% Similarity=0.301 Sum_probs=211.6
Q ss_pred HHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHH
Q ss_conf 89898630---05778568999998406763689999999999999999999999999998511--44423454589999
Q gi|254781149|r 4 EIISHFES---QTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSD--PTCNTATLIRKSMQ 78 (266)
Q Consensus 4 ~~~~~le~---~~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~--~~~~~~~~~~~~e~ 78 (266)
.|.++|++ ++++||..||.+|++.+|| ++|+++||++|++++.+|++++.+.++++.+++ +..+.+++++.+++
T Consensus 131 TV~~~L~~~g~Le~iGG~~YL~~L~~~~pS-~ani~~YA~iVkeks~~R~LI~~a~~i~~la~~~~~~~di~~~ld~ae~ 209 (507)
T PRK05636 131 IVSGRLDRTNDLERVGGAAYLHSLIQSVPT-AANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEGDEGAEVDAVIDRAQQ 209 (507)
T ss_pred HHHHHHHHCCCHHHCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 999998646983531839999999971897-8889999999999999999999999999987437877789999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Q ss_conf 9999996544310466554301168999999999998630-366678511137777765530168368870687414889
Q gi|254781149|r 79 SFEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKK-EGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTT 157 (266)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa 157 (266)
.++++... ....+...+.+.+...++.++...+ .+..+||||||++||++|+||+||+|||||||||||||+
T Consensus 210 ~l~~i~~~-------~~~~~~~~~~d~l~~~~~~ie~~~~~~g~~~Gi~TGf~~LD~~t~Gl~~G~LiIiAARPsmGKTa 282 (507)
T PRK05636 210 EVFAVSQK-------NQSEDYAVLADILDETMAEIEMLESDGGIATGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKST 282 (507)
T ss_pred HHHHHHCC-------CCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHCCCCCCCEEEEEECCCCCHHH
T ss_conf 99998603-------77888556999999999999999857999525658808899755088835679997378786689
Q ss_pred HHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf 9999999963-022323641167534899999999630223234785550178899899999999999997299547479
Q gi|254781149|r 158 FALSTALHMA-MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDR 236 (266)
Q Consensus 158 ~alnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~ 236 (266)
||+|||.|+| ++|++|+|||||||.+|+++|++|+. ++|+++++++|++++++|.++..+++++.++||||||+
T Consensus 283 lAlnia~n~A~~~g~~v~~fSLEMs~~ql~~Rlla~~-----s~V~~~~ir~g~l~~~~~~~l~~a~~~l~~~pl~IdD~ 357 (507)
T PRK05636 283 IALDFMRSASIKNNKASVIFSLEMSKSEIVMRLLSAE-----AEVRLADMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDS 357 (507)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECC
T ss_conf 9999999999876993799715699899999999984-----79887888558878899999999999986198899849
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 98898999999999999947
Q gi|254781149|r 237 PSPGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 237 ~~~ti~~ira~aR~~k~k~~ 256 (266)
|++|+.+|+++||++|++|+
T Consensus 358 ~~lti~~Ira~aRrlk~~~~ 377 (507)
T PRK05636 358 ANLTMMEIRSKARRLKQKHD 377 (507)
T ss_pred CCCCHHHHHHHHHHHHHHCC
T ss_conf 99769999999999986179
No 5
>PRK08506 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=406.95 Aligned_cols=241 Identities=22% Similarity=0.348 Sum_probs=210.9
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89898630057785689999984067636899999999999999999999999999985114442345458999999999
Q gi|254781149|r 4 EIISHFESQTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPTCNTATLIRKSMQSFEDI 83 (266)
Q Consensus 4 ~~~~~le~~~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~ 83 (266)
.|.+++++.++++. .|+..+.. +++ .+|+.+|+++|++++.+|+++..+.++...+++...+..++++.+++.++++
T Consensus 63 tl~~~L~~~~~l~~-~~l~~~~~-~~s-~ani~~Ya~iV~e~s~~R~li~~~~~i~~~a~~~~~~~~~~l~~ae~~l~~i 139 (473)
T PRK08506 63 FIRKKLPKDKKIDE-EILLEILA-ANP-IINIEAYVEEIKEKSIKRKLLSLANTIPEQAVEEDQASSDILDEVERELYSI 139 (473)
T ss_pred HHHHHHHHCCCCCH-HHHHHHHC-CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999874687437-66877632-786-8889999999999999999999999999985447998999999999999999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 96544310466554301168999999999998630--3666785111377777655301683688706874148899999
Q gi|254781149|r 84 ISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKK--EGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALS 161 (266)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~aln 161 (266)
... .....+..+.+.+.+.++.++.... .+..+|+||||++||++|+||+||+|||||||||||||+||+|
T Consensus 140 ~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Gi~TGf~~LD~~t~Gl~~gdLiIIAARPsmGKTAfAln 212 (473)
T PRK08506 140 TNG-------SNSEDFKDSKEVIKSTMEHIKKQKRLGNKDIIGLDTGFKQLNKMTKGFNKGDLIIIAARPSMGKTTLVLN 212 (473)
T ss_pred HHC-------CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 825-------7878851299999999999999985589985347788087888726998562799950799867899999
Q ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH
Q ss_conf 99996302232364116753489999999963022323478555017889989999999999999729954747998898
Q gi|254781149|r 162 TALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI 241 (266)
Q Consensus 162 ia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti 241 (266)
+|.|++.+|+||+|||||||++|+++|++|+. ++|+..++++|.++++||.++..+++++.++||||||+|++||
T Consensus 213 iA~~~a~~~~~V~~FSLEMs~~ql~~Rlls~~-----s~V~~~~lr~g~l~~~e~~~~~~a~~~l~~~~l~IdD~~~lti 287 (473)
T PRK08506 213 MVLKALNQGKGVAFFSLEMPAEQLMLRMLSAK-----TSIPLQNLRTGDLDDDEWENLSDACDELSQKKLFVYDSGYVNI 287 (473)
T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCH
T ss_conf 99999965996589822479999999999972-----8878310006899999999999999998659889988999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999947999
Q gi|254781149|r 242 MEFVHVANGLRNKHTKMV 259 (266)
Q Consensus 242 ~~ira~aR~~k~k~~~~~ 259 (266)
.+||++||++|++|+.+.
T Consensus 288 ~~Ira~~Rr~k~~~~~l~ 305 (473)
T PRK08506 288 HQVRAQLRKLKSQHPEIG 305 (473)
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 999999999999769987
No 6
>PRK08760 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=401.13 Aligned_cols=241 Identities=24% Similarity=0.329 Sum_probs=212.0
Q ss_pred HHHHHHHC---CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHH
Q ss_conf 98986300---5778568999998406763689999999999999999999999999998511-4442345458999999
Q gi|254781149|r 5 IISHFESQ---TKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSD-PTCNTATLIRKSMQSF 80 (266)
Q Consensus 5 ~~~~le~~---~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~-~~~~~~~~~~~~e~~l 80 (266)
|.++|++. +++||..||.+|+..+|+ ++|+.+||++|++++.+|++++.+.++...+++ ...+..++++.+++.+
T Consensus 93 v~~~L~~~~~le~iGG~~YL~~L~~~~ps-~an~~~Ya~iVkeks~~R~li~~~~~i~~~a~~~~~~d~~eil~~ae~~i 171 (476)
T PRK08760 93 LGEWFESQGKLEQVGDGAYLIELASTTPS-AANIAAYAEIVRDKAVLRQLIEVGTTIVNDGFQPEGRESIELLASAEKAV 171 (476)
T ss_pred HHHHHHHCCCHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99999647982324889999999971898-88999999999999999999999999999863756787899999999999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 9999654431046655430116899999999999863-036667851113777776553016836887068741488999
Q gi|254781149|r 81 EDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQK-KEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFA 159 (266)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~a 159 (266)
+++..... ....+...+.+.+.+.++.++... ..+..+|+||||++||++|+||+||+|||||||||||||+||
T Consensus 172 ~~i~~~~~-----~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~Gi~TG~~~LD~~t~Gl~~G~LiViaaRPsmGKTala 246 (476)
T PRK08760 172 FKIAEAGA-----RGRTDFVAMPGALKDAFEELRNRFENGGNITGLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFA 246 (476)
T ss_pred HHHHHHCC-----CCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHH
T ss_conf 99986057-----6777730099999999999999985799953367796889974469987777999877887478999
Q ss_pred HHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 99999963-02232364116753489999999963022323478555017889989999999999999729954747998
Q gi|254781149|r 160 LSTALHMA-MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPS 238 (266)
Q Consensus 160 lnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~ 238 (266)
+|+|.|+| ..|++|+|||||||.+|+++|++|+. ++|++.+++.|.+++++|.++..++.++.++||||||+|+
T Consensus 247 lnia~~~A~~~~~~V~~fSLEMs~~ql~~Rlls~~-----s~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~idD~~~ 321 (476)
T PRK08760 247 LNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSN-----GRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPG 321 (476)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 99999999837997899703699999999999983-----3897677764899999999999999998608816857999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 898999999999999947
Q gi|254781149|r 239 PGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 239 ~ti~~ira~aR~~k~k~~ 256 (266)
+|+.+||++||++|++|+
T Consensus 322 ~t~~~ir~~~R~~k~~~~ 339 (476)
T PRK08760 322 VSPEVLRSKCRRLKREHD 339 (476)
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 999999999999987279
No 7
>PRK08694 consensus
Probab=100.00 E-value=0 Score=398.23 Aligned_cols=242 Identities=21% Similarity=0.325 Sum_probs=209.2
Q ss_pred HHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHH
Q ss_conf 9898630---057785689999984067636899999999999999999999999999985114-442345458999999
Q gi|254781149|r 5 IISHFES---QTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDP-TCNTATLIRKSMQSF 80 (266)
Q Consensus 5 ~~~~le~---~~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~-~~~~~~~~~~~e~~l 80 (266)
|.++|++ .+++||..||.+|+..+|| ++|+.+||++|++++.+|+++..+.++.+.++++ +.+..++++.++..+
T Consensus 80 v~~~L~~~~~l~~iGG~~yL~~L~~~~ps-~an~~~YA~iVke~s~~R~li~~a~~i~~~a~~~~~~d~~~il~~ae~~l 158 (468)
T PRK08694 80 VQEDLQRNEELEAAGGFEYLITLAQNTPS-AANIRRYAEIVRERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKV 158 (468)
T ss_pred HHHHHHHCCCHHHCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99998655980323839999999861886-89999999999999999999999999999730456899999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH---HHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Q ss_conf 9999654431046655430116899999999999---8630366678511137777765530168368870687414889
Q gi|254781149|r 81 EDIISEVHLTKNQCTGSSCISIANAATTAMKSAE---QQKKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTT 157 (266)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa 157 (266)
+++..... .....+..+.+.+.+.++.++ .+...+..+|+||||++||++|+||+||+|||||||||||||+
T Consensus 159 ~~i~~~~~-----~~~~~~~~~~d~l~~~~e~ie~~~~~~~~~~~~Gi~TG~~~LD~~t~Gl~~G~LiVIaaRPsmGKTa 233 (468)
T PRK08694 159 FQIAESTA-----KSKQGFLEMPDLLKEVVQRIDMLYSRDNPDEVTGVPTGFIDLDKKTSGLQPGDLIIVAGRPSMGKTA 233 (468)
T ss_pred HHHHHHCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHH
T ss_conf 99997247-----6667742099999999999999996059998751557968898764488878479996178653789
Q ss_pred HHHHHHHHHHHCCC-CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf 99999999630223-23641167534899999999630223234785550178899899999999999997299547479
Q gi|254781149|r 158 FALSTALHMAMSGH-GVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDR 236 (266)
Q Consensus 158 ~alnia~~~a~~g~-~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~ 236 (266)
||+|+|.|+|.+|+ ||+|||||||.+|+++|++|.. ++|+..++++|+++++||.++..++.++.++||||||+
T Consensus 234 lalnia~~~a~~~~~~V~~fSLEMs~~~l~~Rlla~~-----s~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~pl~idd~ 308 (468)
T PRK08694 234 FSINIAEHVAVEGKLPVAVFSMEMGGAQLVMRMLGSV-----GRLDQSVLKTGRLEDEHWGRLNEAVVKLSDAPVYIDET 308 (468)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH-----CCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 9999999999847984799778899999999999972-----59863211048999999999999999986299689769
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 988989999999999999479
Q gi|254781149|r 237 PSPGIMEFVHVANGLRNKHTK 257 (266)
Q Consensus 237 ~~~ti~~ira~aR~~k~k~~~ 257 (266)
|++|+.+|+++||++|++|+.
T Consensus 309 ~~~t~~~i~a~~r~~~~~~~~ 329 (468)
T PRK08694 309 PGLTALELRARARRLARQFNN 329 (468)
T ss_pred CCCCHHHHHHHHHHHHHHHCC
T ss_conf 999887999999999998389
No 8
>PRK06321 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=399.19 Aligned_cols=247 Identities=19% Similarity=0.249 Sum_probs=205.7
Q ss_pred HHHHHHH---HCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 8989863---0057785689999984067636899999999999999999999999999985114442345458999999
Q gi|254781149|r 4 EIISHFE---SQTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPTCNTATLIRKSMQSF 80 (266)
Q Consensus 4 ~~~~~le---~~~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l 80 (266)
.|.++|+ .++++||..||.+|++.+++ ++|+.+||++|++++.+|+++..+.++...+++...+..++++.+++.+
T Consensus 75 Tv~~~L~~~~~l~~iGG~~yL~~L~~~~~s-~an~~~Ya~iV~eks~~R~li~~~~~i~~~a~~~~~d~~~~ld~ae~~l 153 (472)
T PRK06321 75 LAGEELKRRNQLTVIGGPSYLITLAEFAGT-SAYIEEYVEIIRSKSILRKMIQAAKEIEKKALEEPKDVAVALDEAQNLL 153 (472)
T ss_pred HHHHHHHHCCCHHHCCCHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 999999746981321769999999872887-8899999999999899999999999999986358989999999999999
Q ss_pred HHHHHHHHHHCCCCCCC--------CHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 99996544310466554--------30116899999999999863---03666785111377777655301683688706
Q gi|254781149|r 81 EDIISEVHLTKNQCTGS--------SCISIANAATTAMKSAEQQK---KEGENPDIKWGLQSVDHLMGGVQLRELILIGA 149 (266)
Q Consensus 81 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~---~~~~~~Gi~TG~~~LD~~~gG~~~g~Liviaa 149 (266)
+++.............+ ....+...+.+..+...... ..+.++|+||||++||++|+||+||+||||||
T Consensus 154 ~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~e~~e~~~~~~~~~~~~~itGipTGf~~LD~lt~Gl~~Gdliviaa 233 (472)
T PRK06321 154 FKISQTTNLAQYVLVADKLKGLTSTKDKPFLLQLQERQEAFQQSAQDDSSPMISGIPTHFIDLDKMINGFSPSNLMILAA 233 (472)
T ss_pred HHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEC
T ss_conf 99970357665410465650221000157899999999999975212578876422568488999855988675799853
Q ss_pred CCCHHHHHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 874148899999999963022-3236411675348999999996302232347855501788998999999999999972
Q gi|254781149|r 150 RPSMGKTTFALSTALHMAMSG-HGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQD 228 (266)
Q Consensus 150 RP~mGKTa~alnia~~~a~~g-~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~ 228 (266)
|||||||+||+|+|.|+|.++ +||+|||||||.+|++.|++|+. ++|++++++.|.++++||.++..+++++.+
T Consensus 234 RPsmGKTalalnia~~~a~~~~~~v~~fSLEMs~~ql~~R~ls~~-----s~i~~~~i~~g~l~~~e~~~~~~a~~~l~~ 308 (472)
T PRK06321 234 RPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSR-----SEVESKKISVGDLSGRDFQRIVSVVNEMQE 308 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 899977999999999999856994699757799999999998740-----376755210479999999999999999854
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9954747998898999999999999947
Q gi|254781149|r 229 FPLIIDDRPSPGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 229 ~pl~IdD~~~~ti~~ira~aR~~k~k~~ 256 (266)
+||||||+|++||.+||++||++|++|+
T Consensus 309 ~~l~idd~~~~ti~~i~~~~r~~k~~~~ 336 (472)
T PRK06321 309 HTLLIDDQPGLKITDLRARARRMKESYD 336 (472)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 8757867999989999999999987389
No 9
>PRK08082 consensus
Probab=100.00 E-value=0 Score=396.82 Aligned_cols=240 Identities=22% Similarity=0.312 Sum_probs=213.2
Q ss_pred HHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 89898630---057785689999984067636899999999999999999999999999985114442345458999999
Q gi|254781149|r 4 EIISHFES---QTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPTCNTATLIRKSMQSF 80 (266)
Q Consensus 4 ~~~~~le~---~~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l 80 (266)
.|.+++++ .+++||..||.+|++.+|+ ++|+.+|+++|++++.+|+++..+.++...+++...+.++++++++..+
T Consensus 69 TV~~~L~~~~~l~~iGG~~yL~~L~~~~~s-~an~~~Ya~iVke~a~~R~li~~~~~i~~~a~~~~~~~~~ll~~ae~~l 147 (453)
T PRK08082 69 TVTSALADQGLLEEVGGVSYLTELAESVPT-AANVEYYARIVEEKSLLRRLIRTATHIAQDGYEREDEVDGLLDEAEKKI 147 (453)
T ss_pred HHHHHHHHCCCHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 999998526981431789999999970776-6789999999999999999999999999863057667899999999999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 999965443104665543011689999999999986-3036667851113777776553016836887068741488999
Q gi|254781149|r 81 EDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQ-KKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFA 159 (266)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~a 159 (266)
+++.... .......+.+.+.+.++.++.. ...+..+|+||||++||++||||+||+|||||||||||||+|+
T Consensus 148 ~~i~~~~-------~~~~~~~~~d~l~~~~~~ie~~~~~~g~~~Gi~TGf~~LD~lt~G~~~g~LiviaaRPsmGKTa~a 220 (453)
T PRK08082 148 LEVSQRK-------NSGAFQNIKDVLVDTYDNIELLHNRKGDITGIPTGFTELDRMTAGFQRNDLIIVAARPSVGKTAFA 220 (453)
T ss_pred HHHHHCC-------CCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHH
T ss_conf 9997335-------788855399999999999999983789977554884888864147775857999867887578999
Q ss_pred HHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 99999963-02232364116753489999999963022323478555017889989999999999999729954747998
Q gi|254781149|r 160 LSTALHMA-MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPS 238 (266)
Q Consensus 160 lnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~ 238 (266)
+|+|.|+| ++|+||+|||||||.+|++.|++|+. ++|+..++++|.++++||.++..++.++.++||||||+|+
T Consensus 221 lnia~~~a~~~~~~V~~fSlEM~~~~l~~R~la~~-----s~i~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~idd~~~ 295 (453)
T PRK08082 221 LNIAQNVATKTDENVAIFSLEMGADQLVMRMLCAE-----GNIDAQRLRTGSLTSDDWGKLTMAMGSLSNAGIYIDDTPG 295 (453)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCC-----CCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99999999855994899731389899999999715-----5888667751899999999999999985069738978999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 898999999999999947
Q gi|254781149|r 239 PGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 239 ~ti~~ira~aR~~k~k~~ 256 (266)
+|+.+||++||++|++|+
T Consensus 296 ~~i~~i~~~~r~~~~~~~ 313 (453)
T PRK08082 296 IRVNEIRAKCRRLKQEQG 313 (453)
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 989999999999998669
No 10
>PRK05595 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=395.74 Aligned_cols=240 Identities=24% Similarity=0.347 Sum_probs=211.6
Q ss_pred HHHHHHHHC---CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 898986300---57785689999984067636899999999999999999999999999985114442345458999999
Q gi|254781149|r 4 EIISHFESQ---TKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPTCNTATLIRKSMQSF 80 (266)
Q Consensus 4 ~~~~~le~~---~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l 80 (266)
.|.+++++. +++||..||.+|++.+|+ ++|+.+|+++|++++.+|+++..+.++.+.+++...+..++++.+++.+
T Consensus 67 tv~~~L~~~~~l~~iGg~~yL~~L~~~~~s-~an~~~ya~iV~e~~~~R~li~~~~~i~~~a~~~~~~~~~~l~~ae~~l 145 (444)
T PRK05595 67 TLTENLKSTDKLEAVGGVTYITELSNSVVS-TANIQSYIKIVKDKSTLRKLIKSSTEIIENCYNNQDNVEKVIDSAEKKI 145 (444)
T ss_pred HHHHHHHHCCCCHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 999999756981211649999999862886-7999999999999999999999999999873267667999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 999965443104665543011689999999999986-3036667851113777776553016836887068741488999
Q gi|254781149|r 81 EDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQ-KKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFA 159 (266)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~a 159 (266)
+++.... .......+.+.+...++.++.. ...+..+|+||||++||++||||+||+|||||||||||||+|+
T Consensus 146 ~~i~~~~-------~~~~~~~~~d~l~~~~~~ie~~~~~~~~~~Gi~TGf~~LD~~t~Gl~~GdLiiiaaRP~mGKTa~a 218 (444)
T PRK05595 146 FDISEKR-------TSSDFEPLSNVLERGFEQIENLFNNKGETTGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFA 218 (444)
T ss_pred HHHHHCC-------CCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHH
T ss_conf 9987425-------667855599999999999999970899967765884769987459985777999857989807999
Q ss_pred HHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 99999963-02232364116753489999999963022323478555017889989999999999999729954747998
Q gi|254781149|r 160 LSTALHMA-MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPS 238 (266)
Q Consensus 160 lnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~ 238 (266)
+|+|.|+| ++|++|+|||||||.+|++.|++|+. ++|+..++++|.+++++|+++..+++++.++||||||+|+
T Consensus 219 lnia~~~a~~~g~~V~~fSlEMs~~ql~~R~ls~~-----s~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~ 293 (444)
T PRK05595 219 LNIAEYAALREGKSVVIFSLEMSKEQLAYKLLCSE-----ANVDMLRLRTGNLEDKDWENIARASGPLAAAKIYIDDTAG 293 (444)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999866993799958899999999999964-----6988442326897999999999999998548970548999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 898999999999999947
Q gi|254781149|r 239 PGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 239 ~ti~~ira~aR~~k~k~~ 256 (266)
+|+.+||++||++|++|+
T Consensus 294 ~ti~~i~~~~r~~~~~~~ 311 (444)
T PRK05595 294 VSVMEMRSKCRRLKIEHG 311 (444)
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 648999999999998739
No 11
>PRK07263 consensus
Probab=100.00 E-value=0 Score=394.68 Aligned_cols=240 Identities=20% Similarity=0.293 Sum_probs=212.0
Q ss_pred HHHHHHHHC---CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 898986300---57785689999984067636899999999999999999999999999985114442345458999999
Q gi|254781149|r 4 EIISHFESQ---TKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPTCNTATLIRKSMQSF 80 (266)
Q Consensus 4 ~~~~~le~~---~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l 80 (266)
.|.++|++. +++||..||.+|++.+|+ ++|+++|+++|++++.+|+++..+.++...++++..+.+++++.+++.+
T Consensus 69 tv~~~L~~~~~l~~iGg~~yL~~L~~~~~s-~~n~~~Ya~iV~e~a~~R~li~~~~~~~~~a~~~~~~~~~il~~ae~~l 147 (453)
T PRK07263 69 TVRTILDDQDDLQNIGGLSYIVELVNSVPT-SANAEYYAKIVAEKAMLRDIIARLTESVNQAYEGILKSEEIIAGAEKAL 147 (453)
T ss_pred HHHHHHHHCCCHHHCCCHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 999999647972433779999999861885-5449999999999999999999998999862036889999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 999965443104665543011689999999999986-3036667851113777776553016836887068741488999
Q gi|254781149|r 81 EDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQ-KKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFA 159 (266)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~a 159 (266)
+++.... ....+..+.+.+...++.++.. .+.+..+|+||||++||++|+||+||+|||||||||||||+||
T Consensus 148 ~~i~~~~-------~~~~~~~~~d~l~~~~~~ie~~~~~~~~~~Gi~TGf~~LD~~t~Gl~~GdLiviaaRPsmGKTa~a 220 (453)
T PRK07263 148 IDVNEHS-------NRSGFRKISDVLKVNYENLEARSQQTSDVTGLPTGFRDLDKITTGLHPDQLIILAARPAVGKTAFV 220 (453)
T ss_pred HHHHHCC-------CCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHH
T ss_conf 9998336-------766755599999999999999861889977675885879977328997868999727888478999
Q ss_pred HHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 99999963-02232364116753489999999963022323478555017889989999999999999729954747998
Q gi|254781149|r 160 LSTALHMA-MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPS 238 (266)
Q Consensus 160 lnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~ 238 (266)
+|+|.|+| ++|+||+|||||||.+|++.|++|+. ++|+..+++.|.++++||.++..++.++.++||||||+|+
T Consensus 221 lnia~~iA~~~~~~V~~fSlEMs~~ql~~R~la~~-----~~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~idd~~~ 295 (453)
T PRK07263 221 LNIAQNVGTKQKKTVAIFSLEMGAESLVDRMLAAE-----GMVDSHSLRTGQLTDQDWNNVTIAQGALAEAPIYIDDTPG 295 (453)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----CCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99999999855982899924699899999999986-----1733103313652479999999999874068589978999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 898999999999999947
Q gi|254781149|r 239 PGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 239 ~ti~~ira~aR~~k~k~~ 256 (266)
+|+.+|+++||++++++.
T Consensus 296 ~~i~~i~~~~r~~~~~~~ 313 (453)
T PRK07263 296 IKITEIRARSRKLSQEVD 313 (453)
T ss_pred CCHHHHHHHHHHHHHHHC
T ss_conf 998999999999998605
No 12
>PRK05748 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=393.92 Aligned_cols=243 Identities=24% Similarity=0.345 Sum_probs=215.3
Q ss_pred HHHHHHHHC---CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 898986300---57785689999984067636899999999999999999999999999985114442345458999999
Q gi|254781149|r 4 EIISHFESQ---TKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPTCNTATLIRKSMQSF 80 (266)
Q Consensus 4 ~~~~~le~~---~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l 80 (266)
.|.+++++. +++||..||.+|++.+|+ ++|+.+||++|++++.+|+++..+.++...++++..+.+++++.+++.+
T Consensus 69 tv~~~L~~~g~l~~iGg~~yL~~L~~~~~s-~~n~~~ya~iVke~~~~R~li~~~~~i~~~a~~~~~~~~~il~~ae~~l 147 (448)
T PRK05748 69 TVREILDDQGDLEEVGGLSYLVELANSVPT-AANIEYYAKIVREKATLRRLIRTATEIANSAYEPERDADEILDEAEKKI 147 (448)
T ss_pred HHHHHHHHCCCHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 999999766973431769999999963887-5569999999999999999999999999974278888899999999999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 9999654431046655430116899999999999863-036667851113777776553016836887068741488999
Q gi|254781149|r 81 EDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQK-KEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFA 159 (266)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~a 159 (266)
+++.... ....+..+.+.+.+.++.++... ..+...||||||++||+++|||+||+|||||||||||||+|+
T Consensus 148 ~~i~~~~-------~~~~~~~~~d~l~~~~~~ie~~~~~~~~~~Gi~TG~~~LD~~~~G~~~g~LiviaaRP~mGKTa~a 220 (448)
T PRK05748 148 FEVAEAR-------NKSGFKNIKDVLVKAYDRIEMLFNQTGDITGIPTGFRDLDKMTSGLQPNDLIIVAARPSVGKTAFA 220 (448)
T ss_pred HHHHHCC-------CCCCCEEHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHH
T ss_conf 9998436-------877754499999999999999971899976105782789998279886737999847998768999
Q ss_pred HHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 99999963-02232364116753489999999963022323478555017889989999999999999729954747998
Q gi|254781149|r 160 LSTALHMA-MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPS 238 (266)
Q Consensus 160 lnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~ 238 (266)
+|+|.|+| +.|+||+|||||||.+|++.|++|+. ++|+..++++|++++++|.++..+++++.++||||||+|+
T Consensus 221 lnia~~~a~~~~~~v~~fSlEM~~~~l~~R~la~~-----s~v~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~ 295 (448)
T PRK05748 221 LNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAE-----GRIDQQKLRTGQLTDEDWPKLTIAVGSLSDAPIYIDDTPG 295 (448)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----HCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 99999999856980899817788889999999997-----4677777762899999999999999998659837855898
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 898999999999999947999
Q gi|254781149|r 239 PGIMEFVHVANGLRNKHTKMV 259 (266)
Q Consensus 239 ~ti~~ira~aR~~k~k~~~~~ 259 (266)
+|+.+||++||+++++|+++.
T Consensus 296 ~ti~~i~~~~r~~~~~~~~~~ 316 (448)
T PRK05748 296 IKVTEIRARCRRLAQEHGGLG 316 (448)
T ss_pred CCHHHHHHHHHHHHHHCCCCC
T ss_conf 868999999999999759988
No 13
>PRK08840 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=389.98 Aligned_cols=244 Identities=23% Similarity=0.278 Sum_probs=206.7
Q ss_pred HHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHH
Q ss_conf 89898630---0577856899999840676368999999999999999999999999999851144-4234545899999
Q gi|254781149|r 4 EIISHFES---QTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPT-CNTATLIRKSMQS 79 (266)
Q Consensus 4 ~~~~~le~---~~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~-~~~~~~~~~~e~~ 79 (266)
.|.++|++ ++++||..||++|+..+|| ++|+.+|+++|++++.+|++++.+.++...++++. .+.+++++.++..
T Consensus 79 Tv~~~L~~~~~L~~iGG~~yL~~L~~~~ps-~ani~~Ya~iVkeka~~R~li~~a~~i~~~~~d~~~~~~~~il~~ae~~ 157 (464)
T PRK08840 79 TLSEHLERREQLEDVGGFAYLADLAKNTPS-AANINAYADIVAERALVRNLIGVANEIADAGYDPQGRTSEDLLDMAESK 157 (464)
T ss_pred HHHHHHHHCCCHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 999999646982432729999999971997-8889999999999999999999999999972256688899999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Q ss_conf 99999654431046655430116899999999999863--0366678511137777765530168368870687414889
Q gi|254781149|r 80 FEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQK--KEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTT 157 (266)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa 157 (266)
++++.... .........+.+.+...++.++... ..+..+||||||++||++|+||+||+|||||||||||||+
T Consensus 158 l~~i~~~~-----~~~~~~~~~~~~~~~~~~e~ie~~~~~~~~~~~Gi~TG~~~LD~~~~Gl~~G~LiviaaRPsmGKTa 232 (464)
T PRK08840 158 VFAIAEER-----TSENEGPQNVDSILEKTLERIELLYKSPQDGVTGVSTGFTDLNKKTAGLQGSDLIIVAARPSMGKTT 232 (464)
T ss_pred HHHHHHCC-----CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHH
T ss_conf 99997335-----6677640019999999999999998577999736888989998753698757679998379873689
Q ss_pred HHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEC
Q ss_conf 9999999963-0223236411675348999999996302232347855501788998999999999999972-9954747
Q gi|254781149|r 158 FALSTALHMA-MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQD-FPLIIDD 235 (266)
Q Consensus 158 ~alnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~-~pl~IdD 235 (266)
||+|+|.|+| .+|+||+|||||||.+|++.|++|+. ++|+..++++|.+++++|.++..+++.+.+ .||||||
T Consensus 233 lalnia~n~a~~~~~~v~~fSlEMs~~ql~~Rlls~~-----s~i~~~~ir~g~l~~~e~~~i~~a~~~~~~~~~l~idd 307 (464)
T PRK08840 233 FAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASL-----SRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDD 307 (464)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH-----CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9999999999965996799767799899999999985-----38982011148889999999999999998479958856
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99889899999999999994799
Q gi|254781149|r 236 RPSPGIMEFVHVANGLRNKHTKM 258 (266)
Q Consensus 236 ~~~~ti~~ira~aR~~k~k~~~~ 258 (266)
+|++|+.+|+++||++|++|+.+
T Consensus 308 ~~~~t~~~i~a~~r~~~~~~~~l 330 (464)
T PRK08840 308 SSGLTPTEVRSRARRVAREHGGL 330 (464)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99875799999999999864898
No 14
>PRK06904 replicative DNA helicase; Validated
Probab=100.00 E-value=0 Score=390.19 Aligned_cols=247 Identities=20% Similarity=0.295 Sum_probs=208.1
Q ss_pred HHHHHHHHC---CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
Q ss_conf 898986300---57785689999984067636899999999999999999999999999985114-44234545899999
Q gi|254781149|r 4 EIISHFESQ---TKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDP-TCNTATLIRKSMQS 79 (266)
Q Consensus 4 ~~~~~le~~---~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~-~~~~~~~~~~~e~~ 79 (266)
.|.++|++. +++||..||.+|+..+|| ++|+++||++|++++.+|+++..+.++.+.++++ ..+..++++.+++.
T Consensus 82 Tv~~~L~~~g~l~~iGG~~YL~~L~~~~ps-~an~~~Ya~iVkeks~~R~li~~~~~i~~~a~~~~~~~~~~ild~ae~~ 160 (472)
T PRK06904 82 TLDQALKTKGKSDEVGGFAYLAELSNNTPS-AANILAYADIVREKAILRELISVGNNIAKNAYSPKGQDIKDILDEAERD 160 (472)
T ss_pred HHHHHHHHCCCHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 999999636980322859999999971997-8899999999999999999999988999986377788989999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 99999654431046655430116899999999999863036667851113777776553016836887068741488999
Q gi|254781149|r 80 FEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFA 159 (266)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~a 159 (266)
++++....... ......+.++.+...+.++........++.+||||||++||++||||+||+|||||||||||||+||
T Consensus 161 l~~i~~~~~~~--~~~~~~~~~~~~~~~~~ie~~~~~~~~~~~~Gi~TG~~~LD~~t~Gl~~g~LiViAaRPsmGKTa~a 238 (472)
T PRK06904 161 VFSIAEKRTTA--NEGPQNVINLLENTIDKIENLAATPTNNGVTGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFA 238 (472)
T ss_pred HHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHH
T ss_conf 99998525767--7650549999999999999999742899962322897999744158875757999737987568999
Q ss_pred HHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCC-CCHHHHHHHHHHHHHHHHCC-CEEECC
Q ss_conf 9999996302-23236411675348999999996302232347855501788-99899999999999997299-547479
Q gi|254781149|r 160 LSTALHMAMS-GHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGE-INQEQYRISQGICEKLQDFP-LIIDDR 236 (266)
Q Consensus 160 lnia~~~a~~-g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~-l~~~e~~~i~~a~~~l~~~p-l~IdD~ 236 (266)
+|+|.|+|.. ++||+||||||+.+|+++|++|+. ++|+.+++++|. +++++|.++..+++.++++| |||||+
T Consensus 239 lnia~n~A~~~~~~V~~fSLEM~~~~l~~R~ls~~-----s~v~~~~i~~g~~l~~~e~~~~~~~~~~l~~~~~l~idd~ 313 (472)
T PRK06904 239 MNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASL-----SRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDS 313 (472)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH-----CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 99999999955995799778799999999999986-----4999888646885609999999999999846898168469
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9889899999999999994799
Q gi|254781149|r 237 PSPGIMEFVHVANGLRNKHTKM 258 (266)
Q Consensus 237 ~~~ti~~ira~aR~~k~k~~~~ 258 (266)
|++|+.+|+++||+++++|..+
T Consensus 314 ~~~t~~~i~~~~r~~~~~~~~l 335 (472)
T PRK06904 314 SGLTPTELRSRARRVYRENGGL 335 (472)
T ss_pred CCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999873899
No 15
>PRK08006 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=389.60 Aligned_cols=244 Identities=23% Similarity=0.280 Sum_probs=206.9
Q ss_pred HHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHH
Q ss_conf 89898630---0577856899999840676368999999999999999999999999999851144-4234545899999
Q gi|254781149|r 4 EIISHFES---QTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPT-CNTATLIRKSMQS 79 (266)
Q Consensus 4 ~~~~~le~---~~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~-~~~~~~~~~~e~~ 79 (266)
.|.++|++ ++++||..||.+|++.+|| ++|+.+||++|++++.+|+++..++++...++++. .+.+++++.++..
T Consensus 86 tv~~~L~~~g~l~~iGG~~yL~~L~~~~ps-~an~~~Ya~iVkeks~~R~li~~a~~i~~~~~d~~~~~~~~~ld~ae~~ 164 (471)
T PRK08006 86 TLAESLERQGQLDSVGGFAYLAELSKNTPS-AANISAYADIVRERAVVREMISVANEIADAGYDPQGRTSEDLLDLAESR 164 (471)
T ss_pred HHHHHHHHCCCHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 999999756971422779999999971998-8899999999998678999999988999862187788899999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Q ss_conf 99999654431046655430116899999999999863--0366678511137777765530168368870687414889
Q gi|254781149|r 80 FEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQK--KEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTT 157 (266)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa 157 (266)
++++..... ........+.+.+.+.++.++... ..++.+||||||++||++|+||+||+|||||||||||||+
T Consensus 165 i~~i~~~~~-----~~~~g~~~~~~i~~~~~~~ie~~~~~~~~gi~Gi~TGf~~LD~~t~Gl~~G~LiviaaRPsmGKTa 239 (471)
T PRK08006 165 VFQIAESRA-----NKDEGPKSIDDILDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTT 239 (471)
T ss_pred HHHHHHCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHH
T ss_conf 999984246-----666430109999999999999997267899743668838898641688217389999469987699
Q ss_pred HHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH-HHHHCCCEEEC
Q ss_conf 99999999630-22323641167534899999999630223234785550178899899999999999-99729954747
Q gi|254781149|r 158 FALSTALHMAM-SGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICE-KLQDFPLIIDD 235 (266)
Q Consensus 158 ~alnia~~~a~-~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~-~l~~~pl~IdD 235 (266)
||+|+|.|+|. +|+||+|||||||.+|+++|++|+. ++|+..++++|.++++||.++..++. .+.++||||||
T Consensus 240 lalnia~~~a~~~~~~V~~fSlEMs~~ql~~Rlla~~-----s~v~~~~i~~g~l~~~e~~~l~~~~~~~~~~~~l~idd 314 (471)
T PRK08006 240 FAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASL-----SRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDD 314 (471)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9999999999866995799816799999999999974-----47775545368879999999999999997518857736
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99889899999999999994799
Q gi|254781149|r 236 RPSPGIMEFVHVANGLRNKHTKM 258 (266)
Q Consensus 236 ~~~~ti~~ira~aR~~k~k~~~~ 258 (266)
+|++|+.+|+++||+++++|..+
T Consensus 315 ~~~~t~~~i~a~~r~~~~~~~gl 337 (471)
T PRK08006 315 SSGLTPTEVRSRARRIFREHGGL 337 (471)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89998999999999999864898
No 16
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=388.71 Aligned_cols=240 Identities=24% Similarity=0.345 Sum_probs=218.3
Q ss_pred HHHHHHHHCC---CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHH
Q ss_conf 8989863005---778568999998406763689999999999999999999999999998511444234-545899999
Q gi|254781149|r 4 EIISHFESQT---KISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPTCNTA-TLIRKSMQS 79 (266)
Q Consensus 4 ~~~~~le~~~---~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~~~~~-~~~~~~e~~ 79 (266)
.+.+|+++.+ ++||..||++|+..+|+ ++|+.+|+++|++++++|+++..+.++...+++...+.. ++++.++..
T Consensus 62 tv~~~l~~~~~~~~igg~~yl~~L~~~~ps-~~Ni~~y~~iv~e~s~~R~Li~~~~~i~~~~~~~~~~~~~~~l~~ae~~ 140 (435)
T COG0305 62 TVSEELSDRGLLTRIGGANYLATLIDRTPS-AANIDYYAKIVKEKALLRELIEAGNEIVNLGYESEKDLDEEVLDAAEKK 140 (435)
T ss_pred HHHHHHHHCCHHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 899998641447660758999999862887-6459999999999999999999999999965345444389999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 99999654431046655430116899999999999863036667851113777776553016836887068741488999
Q gi|254781149|r 80 FEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFA 159 (266)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~a 159 (266)
++++... ....++..+.+.+.+.++.++...+.+..+||||||++||++|+||+||+|||+|||||||||+||
T Consensus 141 i~~i~~~-------~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~Gi~tgf~~LD~~t~G~~~~dLiilAaRP~mGKTafa 213 (435)
T COG0305 141 IFDVAER-------KNSEDFVHIGDLLKETMDEIEARFENGGLIGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALA 213 (435)
T ss_pred HHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCHHHHH
T ss_conf 9999975-------213322448899999999999873557885144683456777337746777997168999758999
Q ss_pred HHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 9999996302-232364116753489999999963022323478555017889989999999999999729954747998
Q gi|254781149|r 160 LSTALHMAMS-GHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPS 238 (266)
Q Consensus 160 lnia~~~a~~-g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~ 238 (266)
+|+|.|+|.. ++||+||||||+++|+++|++|.. ++|+..++++|.+++++|+++..+++.+++.||||||+|+
T Consensus 214 lnia~n~a~~~~~~v~iFSLEM~~eql~~R~Ls~~-----s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~ 288 (435)
T COG0305 214 LNIALNAAADGRKPVAIFSLEMSEEQLVMRLLSSE-----SGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPG 288 (435)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCC-----CCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCC
T ss_conf 99999999855897599982679999999753401-----1545100212542689999999999987617854337888
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 898999999999999947
Q gi|254781149|r 239 PGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 239 ~ti~~ira~aR~~k~k~~ 256 (266)
+|+.+||++|||+|++|+
T Consensus 289 ~si~eir~~aRrlk~~~~ 306 (435)
T COG0305 289 LTITEIRSKARRLKLKHN 306 (435)
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 878889999998887459
No 17
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=100.00 E-value=0 Score=386.21 Aligned_cols=244 Identities=23% Similarity=0.349 Sum_probs=212.2
Q ss_pred HHHHHHHHC---CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
Q ss_conf 898986300---57785689999984067636899999999999999999999999999985114-44234545899999
Q gi|254781149|r 4 EIISHFESQ---TKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDP-TCNTATLIRKSMQS 79 (266)
Q Consensus 4 ~~~~~le~~---~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~-~~~~~~~~~~~e~~ 79 (266)
.|.+++++. +++|+..||.+|++.+++ ++|+.+|+++|++++.+|+++..+.++...++++ ..+..++++.++..
T Consensus 57 tl~~~l~~~~~~~~~gg~~yl~~L~~~~~s-~~n~~~ya~~v~e~~~~R~li~~~~~i~~~~~~~~~~~~~~~l~~~~~~ 135 (421)
T TIGR03600 57 TLADKLEAEGEAEKVGGLAYLAEISNNTPS-AANISSYARIVREKAKERKLIAACQRIIDLACSDGGQTAEQKVEEAQAA 135 (421)
T ss_pred HHHHHHHHCCCHHHHCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 999998625745541759999999854896-5669999999999999999999999999987366899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
Q ss_conf 99999654431046655430116899999999999863-03666785111377777655301683688706874148899
Q gi|254781149|r 80 FEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQK-KEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTF 158 (266)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~ 158 (266)
+.++..... .....+..+.+.+.+.++.++.+. ..+..+||||||++||++||||+||+|||||||||||||+|
T Consensus 136 l~~i~~~~~-----~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~Gi~TG~~~LD~~~~Gl~~g~LiIiaARPsmGKTaf 210 (421)
T TIGR03600 136 LLALTGMSD-----GQERGFVTFGEVLEDVVRDLDKRFNPKGELTGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTL 210 (421)
T ss_pred HHHHHHCCC-----CCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCHHHH
T ss_conf 999871345-----676774569999999999999997368986778788078999836999886899985467874599
Q ss_pred HHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 999999963-0223236411675348999999996302232347855501788998999999999999972995474799
Q gi|254781149|r 159 ALSTALHMA-MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRP 237 (266)
Q Consensus 159 alnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~ 237 (266)
|+|+|.|+| .+|+||+|||||||.+|++.|++|+. ++|+..++++|++++++|+++..+++++.++||||||+|
T Consensus 211 alnia~n~A~~~g~~Vl~fSLEMs~eql~~R~la~~-----s~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~ 285 (421)
T TIGR03600 211 ALNIAENVALREGKPVLFFSLEMSAEQLGERLLASK-----SGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTG 285 (421)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----CCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 999999999866983899925799999999999985-----489776665289998999999999998616878996699
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 889899999999999994799
Q gi|254781149|r 238 SPGIMEFVHVANGLRNKHTKM 258 (266)
Q Consensus 238 ~~ti~~ira~aR~~k~k~~~~ 258 (266)
++|+.+||++||++|++|+++
T Consensus 286 ~~ti~~ir~~~r~~~~~~~~l 306 (421)
T TIGR03600 286 GLTVAQIRSIARRIKRKKGGL 306 (421)
T ss_pred CCCHHHHHHHHHHHHHHCCCC
T ss_conf 887678999999999862898
No 18
>PRK06749 replicative DNA helicase; Provisional
Probab=100.00 E-value=0 Score=378.40 Aligned_cols=236 Identities=22% Similarity=0.306 Sum_probs=196.2
Q ss_pred HHHHHHHH--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 89898630--0577856899999840676368999999999999999999999999999851144423454589999999
Q gi|254781149|r 4 EIISHFES--QTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPTCNTATLIRKSMQSFE 81 (266)
Q Consensus 4 ~~~~~le~--~~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~ 81 (266)
.|.++|++ ++++||..||.+|++.+|+ ++|+.+|+++|++++.+|+++..+.++......+. ..+++..++..+.
T Consensus 59 Tv~~~L~~~~L~~iGG~~yL~~L~~~~ps-~an~~~Ya~iVke~~~~R~l~~~~~~~~~~~~~~~--~~~~i~~~~~~l~ 135 (428)
T PRK06749 59 TFISRVDPNFLKGIGGMEYFIGLMDGVPT-TSNFSYYEGLVRGAWKMYQAGVLGHKMGERLIAEK--DEKIIGETITALC 135 (428)
T ss_pred HHHHHHCCCCHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHH
T ss_conf 99998754335443879999999971887-78899999999999999999999999998763461--5789999999999
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 99965443104665543011689999999999986303666785111377777655301683688706874148899999
Q gi|254781149|r 82 DIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALS 161 (266)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~aln 161 (266)
++.. .. .....++.+.+.+.++... .+.+..+|+||||++||++|+||+||+|||||||||||||+||+|
T Consensus 136 ~~~~------~~--~~~~~~~~~~l~~~~e~~~--~~~~~~~Gi~TGf~~LD~lt~Gl~~g~LiviaaRPsmGKTa~aln 205 (428)
T PRK06749 136 ELEE------KD--CVCEFDLKDALVDLYEELH--QDVKEITGIETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALN 205 (428)
T ss_pred HHHC------CC--CCCCCCHHHHHHHHHHHHH--HCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 9862------48--7675428999999999998--464998768778388987524999886899962798976899999
Q ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCC--CCCHHHHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 999963022323641167534899999999630223234785550178--899899999999999997299547479988
Q gi|254781149|r 162 TALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRG--EINQEQYRISQGICEKLQDFPLIIDDRPSP 239 (266)
Q Consensus 162 ia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g--~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ 239 (266)
+|.|+|++|++|+|||||||.+|++.|++|+. ++|+..+++++ .++++||+++..+++++.++||||||+|++
T Consensus 206 ia~~~a~~g~~v~~fSlEMs~~~l~~R~ls~~-----s~v~~~~i~~~~~~~~~~~~~~~~~a~~~l~~~~l~i~d~~~~ 280 (428)
T PRK06749 206 VGLHAAKSGAAVGLFSLEMSSKQLLKRMASCV-----GEVSGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGV 280 (428)
T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 99999964992799837899999999999975-----4998888627767799999999999999985596599758997
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 989999999999999479
Q gi|254781149|r 240 GIMEFVHVANGLRNKHTK 257 (266)
Q Consensus 240 ti~~ira~aR~~k~k~~~ 257 (266)
|+.+|+++||++|++|+.
T Consensus 281 ti~~i~~~~r~~~~~~g~ 298 (428)
T PRK06749 281 TVQDIWMQTRKLKRKHGD 298 (428)
T ss_pred CHHHHHHHHHHHHHHCCC
T ss_conf 679999999999997499
No 19
>TIGR00665 DnaB replicative DNA helicase; InterPro: IPR007692 This family includes the replicative DNA helicases, helicase DnaB, which exhibit DNA-dependent ATPase activity. Helicase DnaB is a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of more than 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. Replication protein, GP12 from Bacteriophage P22 also belongs to this family .; GO: 0003677 DNA binding, 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication.
Probab=100.00 E-value=1.7e-37 Score=281.81 Aligned_cols=242 Identities=25% Similarity=0.304 Sum_probs=210.1
Q ss_pred HCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00577856899999840676368999999999999999999999999999851144-42345458999999999965443
Q gi|254781149|r 11 SQTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPT-CNTATLIRKSMQSFEDIISEVHL 89 (266)
Q Consensus 11 ~~~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~-~~~~~~~~~~e~~l~~~~~~~~~ 89 (266)
..+.+++..|+..|...+|+ ..++..|+++|++++++|+++..+..+....++.. ....++++.+++.++.+......
T Consensus 87 ~~~~~~g~~~l~~l~~~~p~-~~~i~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (465)
T TIGR00665 87 TLDEIGGLFYLVLLSNLTPT-AANIEAYADIVKEKSILRRLISVAKEIAEEGYESKGDEIEDILDEAERKIFKIAESRTS 165 (465)
T ss_pred EHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 22233116788887514752-45789999999768999999986667876202323304678898888899998752000
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-
Q ss_conf 1046655430116899999999999863036667851113777776553016836887068741488999999999630-
Q gi|254781149|r 90 TKNQCTGSSCISIANAATTAMKSAEQQKKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM- 168 (266)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~- 168 (266)
. .....+..+.+...+.++......+....+|+||||..||.+|+||+||+|+|+|||||||||+|++|++.+++.
T Consensus 166 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gf~~ld~~~~G~~~~~l~~~~arP~~Gkt~~~~n~~~~~~~~ 242 (465)
T TIGR00665 166 S---EGLQNIKEVLESTEDLIDKLYRKENHLGVTGIPTGFYDLDKLTGGFQPGDLIIVAARPSMGKTAFALNIAANAANR 242 (465)
T ss_pred C---CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 1---2442088999999988888740233222566653201344543267756558883378752588999999877643
Q ss_pred -----CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCEEECCCCCCHH
Q ss_conf -----223236411675348999999996302232347855501788998999999999999972-99547479988989
Q gi|254781149|r 169 -----SGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQD-FPLIIDDRPSPGIM 242 (266)
Q Consensus 169 -----~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~-~pl~IdD~~~~ti~ 242 (266)
+..+|+||||||+.+|+++|+++.. +.|++.++++|.+++++|+.+..+.+.+++ .|+||+|+|++++.
T Consensus 243 ~~~~~~~~~~~~fsle~~~~~~~~r~~~~~-----~~~~~~~~~~g~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 317 (465)
T TIGR00665 243 EKFDKEDKPVLFFSLEMSAEQLALRLLASE-----SRIDSTKLRTGRLDDEEWEKLTKAMGELSDKLPLYIDDTSGITLT 317 (465)
T ss_pred HHCCCCCCCEEEEEECCCHHHHHHHHHHHH-----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHH
T ss_conf 202423350378851467799999998765-----310134432003237788889999887530156224205775299
Q ss_pred HHHHHHHHHHHHHHH-HHHH
Q ss_conf 999999999999479-9986
Q gi|254781149|r 243 EFVHVANGLRNKHTK-MVQL 261 (266)
Q Consensus 243 ~ira~aR~~k~k~~~-~~~~ 261 (266)
++|++||++++.|+. +.-+
T Consensus 318 ~~~~~~~~~~~~~~gp~~~~ 337 (465)
T TIGR00665 318 EIRSQARRLKRESGGPLGLI 337 (465)
T ss_pred HHHHHHHHHHHHCCCCCEEH
T ss_conf 99999999886417850101
No 20
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.98 E-value=1.2e-31 Score=240.85 Aligned_cols=128 Identities=40% Similarity=0.601 Sum_probs=122.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 851113777776553016836887068741488999999999630-2232364116753489999999963022323478
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGHGVAFFSLEMDREKLGARALSNLLYPSSSRIP 202 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~ 202 (266)
||||||+.||+++|||+||+|+|||||||+|||+|++|+|.|+|. +|++|+|||+||+.+++..|++|.. ++++
T Consensus 1 GIpTG~~~lD~~~gGl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~~~~~~~R~~a~~-----~~v~ 75 (186)
T pfam03796 1 GLPTGFTDLDQLTGGLQKGDLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMSAEQLAERLLSSE-----SRIS 75 (186)
T ss_pred CCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH-----HCCC
T ss_conf 93888077886426988881799996799987999999999999970996687547552999999999986-----2676
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 555017889989999999999999729954747998898999999999999947
Q gi|254781149|r 203 YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 203 ~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k~k~~ 256 (266)
..+++.|.+++++|.++.++.+++.+.|+||+|.|++|+++|++++|+++++|+
T Consensus 76 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~ 129 (186)
T pfam03796 76 SSKLRSGQLSDEDWERLAEAAGELSEAPLYIDDTPGLSLSELRAQARRLKREHG 129 (186)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 555412512167999999999998539868847999989999999999998559
No 21
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.96 E-value=3.4e-28 Score=216.84 Aligned_cols=122 Identities=39% Similarity=0.587 Sum_probs=115.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC
Q ss_conf 777776553016836887068741488999999999630-2232364116753489999999963022323478555017
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIR 208 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~ 208 (266)
++||+++|||+||+|+||||+||+|||+|++|+|.|+|. +|++|+|||+||+.++++.|++|+. ++|+..+++.
T Consensus 1 ~eLD~~~gG~~~G~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm~~~~~~~R~~s~~-----~~i~~~~i~~ 75 (242)
T cd00984 1 TDLDNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASE-----SGISLSKLRT 75 (242)
T ss_pred CCHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----HCCCHHHHHC
T ss_conf 95234316999981899996899999999999999999977995999933353889999999998-----2977455302
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 889989999999999999729954747998898999999999999947
Q gi|254781149|r 209 GEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 209 g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k~k~~ 256 (266)
+.+++++|+++..+..++.+.||||+|.|++|+.+|++++|+++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~t~~~i~~~ir~~~~~~~ 123 (242)
T cd00984 76 GSLSDEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHG 123 (242)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 652279999999999986169889966999999999999999988369
No 22
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.94 E-value=4.1e-26 Score=202.37 Aligned_cols=133 Identities=20% Similarity=0.193 Sum_probs=109.4
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 3036667851113777776553016836887068741488999999999630-223236411675348999999996302
Q gi|254781149|r 117 KKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGHGVAFFSLEMDREKLGARALSNLLY 195 (266)
Q Consensus 117 ~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~~Vl~fSlEMs~~ql~~R~ls~~t~ 195 (266)
++.-...|+-++|+.||++|+||+||+|+|||||||||||+|++++|.|++. .|++|+|||+||+.++++.|++|..++
T Consensus 5 ~~~~~~~~~~~pf~~LD~~~~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~~~~Rlls~~~g 84 (271)
T cd01122 5 REALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAG 84 (271)
T ss_pred HCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 17887556658816688873799998089999689986999999999999997699089997049999999999999829
Q ss_pred CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCC-CEEECC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 23234785550178899899999999999997299-547479-98898999999999999947
Q gi|254781149|r 196 PSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFP-LIIDDR-PSPGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 196 ~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~p-l~IdD~-~~~ti~~ira~aR~~k~k~~ 256 (266)
++......+.. ...+.+..+.+++...| +||.|. +..++.+|++++|+++++|+
T Consensus 85 -----~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~~ 140 (271)
T cd01122 85 -----KRLHLPDTVFI--YTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHG 140 (271)
T ss_pred -----CCHHHCCCCCC--CHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf -----97110344677--809999999999707998088789999889999999999998289
No 23
>PRK05973 replicative DNA helicase; Provisional
Probab=99.88 E-value=8.9e-23 Score=179.09 Aligned_cols=61 Identities=33% Similarity=0.528 Sum_probs=57.9
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 7776553016836887068741488999999999630223236411675348999999996
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSN 192 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~ 192 (266)
--++++|++||||||||||||||||+|++|+|.+++++|++|+||||||+.+|+++|+.+.
T Consensus 54 a~~l~~gLqPGDLIIlAARPsMGKTafaLnla~~A~k~g~~v~fFSLEM~~~ql~~RL~~~ 114 (237)
T PRK05973 54 AEELFGQLRPGDLVLLGARPGQGKTLLGLELAVEAMKSGRTGVFFTLEYTEKDVLDRLRAL 114 (237)
T ss_pred HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHC
T ss_conf 8998568998677999428988789999999999999599669996159999999999972
No 24
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.48 E-value=4.7e-13 Score=111.26 Aligned_cols=126 Identities=26% Similarity=0.356 Sum_probs=96.5
Q ss_pred CCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 78511137777765-53016836887068741488999999999630223236411675348999999996302232347
Q gi|254781149|r 123 PDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRI 201 (266)
Q Consensus 123 ~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I 201 (266)
.-++||+.+||+.+ ||+-||.++.|||-||.|||+++|++|.+.+.+|++|+|+|-|-|.+|+..|. ..- ++
T Consensus 62 ~R~~Tgi~ElDRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGEES~~QIk~RA--~RL-----g~ 134 (372)
T cd01121 62 ERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRA--DRL-----GI 134 (372)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHH--HHH-----CC
T ss_conf 54447836665400577306717998259988688999999999986399389982456789999899--985-----87
Q ss_pred CHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEE--------C--CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 855501788998999999999999972995474--------7--9988989999999999999479
Q gi|254781149|r 202 PYLNLIRGEINQEQYRISQGICEKLQDFPLIID--------D--RPSPGIMEFVHVANGLRNKHTK 257 (266)
Q Consensus 202 ~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~Id--------D--~~~~ti~~ira~aR~~k~k~~~ 257 (266)
...++. -+++.+.+.+...+++.+-.=+.|| + .+-=|+.|+|.-+-.+-+-.|+
T Consensus 135 ~~~~l~--l~set~le~Il~~i~~~kP~~lIIDSIQT~~~~~~~s~pGsvsQVReca~~L~~~AK~ 198 (372)
T cd01121 135 STENLY--LLAETNLEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKE 198 (372)
T ss_pred CCCCCE--EEECCCHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 887727--8843569999999997199889995622020377677998789999999999999986
No 25
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.42 E-value=1.9e-12 Score=107.05 Aligned_cols=126 Identities=25% Similarity=0.362 Sum_probs=96.1
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 678511137777765-5301683688706874148899999999963022323641167534899999999630223234
Q gi|254781149|r 122 NPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSR 200 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~ 200 (266)
..-++||+.+||+.+ ||+-||.+++|||.||.|||++.|++|.+.+ ++++|+|+|-|-|.+|+..|.- .- +
T Consensus 69 ~~R~~Tgi~ElDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la-~~~~vLYvSGEES~~Qik~RA~--RL-----g 140 (454)
T PRK11823 69 EPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALA-AGGKVLYVSGEESLQQIKLRAE--RL-----G 140 (454)
T ss_pred CCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCHHHHHHHHHHH--HH-----C
T ss_conf 55323785566522158720664899507998889999999999985-5995799815015789999999--75-----8
Q ss_pred CCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEE--------C--CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7855501788998999999999999972995474--------7--9988989999999999999479
Q gi|254781149|r 201 IPYLNLIRGEINQEQYRISQGICEKLQDFPLIID--------D--RPSPGIMEFVHVANGLRNKHTK 257 (266)
Q Consensus 201 I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~Id--------D--~~~~ti~~ira~aR~~k~k~~~ 257 (266)
+...++. -+++.+++.+...+++++-.=+.|| + .+-=|+.|+|.-+-.+-+-.|.
T Consensus 141 ~~~~~l~--l~~et~l~~Il~~i~~~~P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a~~L~~~AK~ 205 (454)
T PRK11823 141 LPSDNLY--LLAETNLEDILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELTRLAKQ 205 (454)
T ss_pred CCCCCCE--EEECCCHHHHHHHHHHHCCCEEEEECHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8888737--8853689999999986099889994311154156677899789999999999999974
No 26
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=99.37 E-value=8.4e-12 Score=102.54 Aligned_cols=67 Identities=31% Similarity=0.475 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 511137777765-5301683688706874148899999999963-022323641167534899999999
Q gi|254781149|r 125 IKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMA-MSGHGVAFFSLEMDREKLGARALS 191 (266)
Q Consensus 125 i~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls 191 (266)
||||++.||+++ ||+-+|.+++|.|.||.|||.|+++++.+.+ ..|.+|+|+|+|.+.+++..++-+
T Consensus 1 i~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~~~l~~~~~~ 69 (231)
T pfam06745 1 VKTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPPEDLRENAKS 69 (231)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 988955688631699829969999858972599999999999998658968999813799999999998
No 27
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.37 E-value=2.8e-12 Score=105.83 Aligned_cols=109 Identities=21% Similarity=0.253 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8511137777765-530168368870687414889999999996302232364116753489999999963022323478
Q gi|254781149|r 124 DIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIP 202 (266)
Q Consensus 124 Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~ 202 (266)
-++||++.||+++ ||+.+|..++|.|.||.|||+|+++++.++|++|-+++||++|-+.+|+..|+-+- +++
T Consensus 247 rv~tGi~~LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l~~~a~~~-------G~d 319 (501)
T PRK09302 247 RISSGVPDLDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQLVRNATSW-------GID 319 (501)
T ss_pred CCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHC-------CCC
T ss_conf 0047973278872599758946999889998889999999999986599089999967999999999973-------998
Q ss_pred HHHCC-----------CCCCCHH-HHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 55501-----------7889989-9999999999997299547479988
Q gi|254781149|r 203 YLNLI-----------RGEINQE-QYRISQGICEKLQDFPLIIDDRPSP 239 (266)
Q Consensus 203 ~~~l~-----------~g~l~~~-e~~~i~~a~~~l~~~pl~IdD~~~~ 239 (266)
...+. -..++-+ -..++.+.+++..-.-+.||.-.++
T Consensus 320 l~~~~~~G~l~i~~~~p~~~~~~e~~~~i~~~v~~~~~~rVvIDsls~~ 368 (501)
T PRK09302 320 LEEMERKGLLKIICARPESTGLEDHLQIIKREIEEFKPSRVAVDPLSAL 368 (501)
T ss_pred HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 4888748947999837000598999999999999729989999580687
No 28
>PRK04328 hypothetical protein; Provisional
Probab=99.35 E-value=1.3e-11 Score=101.24 Aligned_cols=68 Identities=21% Similarity=0.397 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 8511137777765-5301683688706874148899999999963022323641167534899999999
Q gi|254781149|r 124 DIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALS 191 (266)
Q Consensus 124 Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls 191 (266)
-++||++.||+++ ||+-+|..++|+|.||.|||+|+++++.+.+++|.+|+|+|+|.+.+++..++-+
T Consensus 5 Rv~TGI~gLD~lL~GGlp~gs~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis~eE~~~~l~~~~~~ 73 (250)
T PRK04328 5 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQ 73 (250)
T ss_pred EECCCCHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHH
T ss_conf 103585667875159987996999982899998999999999998769977999972799999999998
No 29
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.33 E-value=1.8e-11 Score=100.19 Aligned_cols=69 Identities=20% Similarity=0.215 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 8511137777765-53016836887068741488999999999630223236411675348999999996
Q gi|254781149|r 124 DIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSN 192 (266)
Q Consensus 124 Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~ 192 (266)
-||||++.||+++ ||+-+|.+++|.|.||.|||+|+++++.+++.+|.+|+|||+|.+.+++..++-+.
T Consensus 13 ~i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~~~~~~~~~~~ 82 (241)
T PRK06067 13 IISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTSKSYLKQMESL 82 (241)
T ss_pred CCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHC
T ss_conf 2566875578650699779908999807998879999999999986798299999428999999999983
No 30
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.30 E-value=2e-11 Score=99.96 Aligned_cols=71 Identities=23% Similarity=0.340 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 8511137777765-530168368870687414889999999996302-23236411675348999999996302
Q gi|254781149|r 124 DIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMS-GHGVAFFSLEMDREKLGARALSNLLY 195 (266)
Q Consensus 124 Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~-g~~Vl~fSlEMs~~ql~~R~ls~~t~ 195 (266)
-+|||++.||.++ |||-+|.+++|.|.||.|||+|+++++.+.+++ |.+++|+|||.+.+++..=+ ++.+.
T Consensus 5 Ri~TGI~GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~~l~~~~-~~~g~ 77 (501)
T PRK09302 5 KLPTGIEGFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPEDIIRNV-ASFGW 77 (501)
T ss_pred CCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH-HHCCC
T ss_conf 21448711577854898899779998389999999999999999885599789998579999999999-98499
No 31
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=99.28 E-value=8.2e-12 Score=102.61 Aligned_cols=127 Identities=25% Similarity=0.380 Sum_probs=93.7
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH-HHCCCCC
Q ss_conf 678511137777765-53016836887068741488999999999630223236411675348999999996-3022323
Q gi|254781149|r 122 NPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSN-LLYPSSS 199 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~-~t~~~~s 199 (266)
.+=++|||.+||+.+ ||.-||-||.|||-||.||||+.|+++...|.+...|||.|-|=|-.|+.+|..=- +|.....
T Consensus 82 ~~rf~s~~~ElDrVLGGGivpGsliLiGG~PG~GKSTLLLqV~~~LA~~~~~~LYVsGEES~~Q~klRA~RLGit~~~~~ 161 (481)
T TIGR00416 82 EPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNSMKVLYVSGEESLQQIKLRATRLGITDLVEP 161 (481)
T ss_pred CCEEECCCCCCCEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCH
T ss_conf 76053066410011067222441698468899635678999999984048816899723016778888754553247870
Q ss_pred -----CCCHHHCC-CCC---CCHHHHHHHHHHHHHHHHCCCEEEC-----------CCCCCHHHHHHHHHHH
Q ss_conf -----47855501-788---9989999999999999729954747-----------9988989999999999
Q gi|254781149|r 200 -----RIPYLNLI-RGE---INQEQYRISQGICEKLQDFPLIIDD-----------RPSPGIMEFVHVANGL 251 (266)
Q Consensus 200 -----~I~~~~l~-~g~---l~~~e~~~i~~a~~~l~~~pl~IdD-----------~~~~ti~~ira~aR~~ 251 (266)
+| +++. .|+ |+|.+|+.+...++.++=.=+-||- .|+ ||+|+|--+--+
T Consensus 162 sqaqdGi--nnlahdG~L~~L~Et~~e~I~~~~e~~~P~~~ViDSIQ~ly~~di~SaPG-SVsQVRE~t~~L 230 (481)
T TIGR00416 162 SQAQDGI--NNLAHDGNLYVLSETNLEQICAEIEELNPQVVVIDSIQTLYLPDISSAPG-SVSQVRECTAEL 230 (481)
T ss_pred HHHHHHH--HHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCC-CHHHHHHHHHHH
T ss_conf 2344324--54302675321575798999999985299489991421000000025888-423888999999
No 32
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6.8e-11 Score=96.18 Aligned_cols=123 Identities=27% Similarity=0.366 Sum_probs=92.4
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 678511137777765-5301683688706874148899999999963022323641167534899999999630223234
Q gi|254781149|r 122 NPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSR 200 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~ 200 (266)
..-++||+.+||+.+ ||+-||.++.|||-||.|||++.|+++.+.|.++ +|+|.|-|-|..|+..|.- .- +
T Consensus 72 ~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~--RL-----~ 143 (456)
T COG1066 72 EPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRAD--RL-----G 143 (456)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHH--HH-----C
T ss_conf 24235781888765367723661799736898779899999999987059-5799967767899999999--82-----8
Q ss_pred CCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEC-----------CCCCCHHHHHHHHHHHHHHH
Q ss_conf 78555017889989999999999999729954747-----------99889899999999999994
Q gi|254781149|r 201 IPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDD-----------RPSPGIMEFVHVANGLRNKH 255 (266)
Q Consensus 201 I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD-----------~~~~ti~~ira~aR~~k~k~ 255 (266)
++..++. -+.+..++.+...++.. +-.|.|-| ++--|++|+|.-+-.+-+=.
T Consensus 144 ~~~~~l~--l~aEt~~e~I~~~l~~~-~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~A 206 (456)
T COG1066 144 LPTNNLY--LLAETNLEDIIAELEQE-KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLA 206 (456)
T ss_pred CCCCCEE--EEHHCCHHHHHHHHHHC-CCCEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9964557--74112899999999854-997899965412302633579985899999999999999
No 33
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.26 E-value=1.3e-10 Score=94.21 Aligned_cols=61 Identities=28% Similarity=0.503 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCC-CCHHHH
Q ss_conf 511137777765-5301683688706874148899999999963022323641167-534899
Q gi|254781149|r 125 IKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE-MDREKL 185 (266)
Q Consensus 125 i~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlE-Ms~~ql 185 (266)
||||+..||+++ ||+.+|.++.|+|.||.|||+|++++|.+++..|.+|+|++.| .+.+.+
T Consensus 5 isTG~~~lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidtE~~~~er~ 67 (224)
T PRK09361 5 LPTGCKSLDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDTEGLSPERF 67 (224)
T ss_pred ECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
T ss_conf 037978999862699888879999899998599999999999997499099967876788999
No 34
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.23 E-value=3.1e-10 Score=91.57 Aligned_cols=56 Identities=30% Similarity=0.468 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 511137777765-53016836887068741488999999999630223236411675
Q gi|254781149|r 125 IKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180 (266)
Q Consensus 125 i~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEM 180 (266)
||||++.||+++ ||+.+|.++.|+|.||.|||+|++++|.+++..|.+|+|++.|-
T Consensus 1 IsTG~~~lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~ 57 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 998807899985699878879999899998499999999999863698699996655
No 35
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.11 E-value=2.1e-10 Score=92.84 Aligned_cols=69 Identities=33% Similarity=0.453 Sum_probs=65.0
Q ss_pred CCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 78511137777765-5301683688706874148899999999963022323641167534899999999
Q gi|254781149|r 123 PDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALS 191 (266)
Q Consensus 123 ~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls 191 (266)
..+|||++.||+++ ||+.+|..++|.|.||.|||+|+++++.+.+..|.||+|+|+|.+.+++..-+.+
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~ 72 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARS 72 (260)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHH
T ss_conf 6568997418888368988997899993899868999999999776269858999920698999999988
No 36
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.96 E-value=3.5e-08 Score=77.32 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH------CCCCEEEECCCCC
Q ss_conf 511137777765-53016836887068741488999999999630------2232364116753
Q gi|254781149|r 125 IKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAM------SGHGVAFFSLEMD 181 (266)
Q Consensus 125 i~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~------~g~~Vl~fSlEMs 181 (266)
||||++.||+++ ||+.+|.++-|.|.||.|||.|++++|.++.. .+..|+|++-|-+
T Consensus 1 isTG~~~lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~ 64 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 9888578996507996478799999999984999999999998424753678962999953677
No 37
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.90 E-value=1.5e-08 Score=79.76 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 8511137777765-53016836887068741488999999999630223236411675348999999996
Q gi|254781149|r 124 DIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSN 192 (266)
Q Consensus 124 Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~ 192 (266)
-|..+=.+||+.+ ||+-+|.+++|.|-||.|||.|++++++..+.+|.+|+|+|.|.+.+++...|-|-
T Consensus 5 ~~~~~~d~ld~~lggGip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~ 74 (230)
T PRK08533 5 KIELDGDELHKRLGGGIPFGSIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSL 74 (230)
T ss_pred CEECCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHC
T ss_conf 0105713578871789889848999868998789999999999987898699999438999999999986
No 38
>KOG2373 consensus
Probab=98.82 E-value=1.5e-08 Score=79.79 Aligned_cols=99 Identities=17% Similarity=0.290 Sum_probs=82.4
Q ss_pred CCCCCCCH-HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 66785111-37777765530168368870687414889999999996302232364116753489999999963022323
Q gi|254781149|r 121 ENPDIKWG-LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSS 199 (266)
Q Consensus 121 ~~~Gi~TG-~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s 199 (266)
.+.|+.+- |+.|+++++|.+||+|.|+-|.+|.|||+|....++..+.+|...++-|+||++..++.-|+-...| .
T Consensus 251 ~v~G~~WkRFpvLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyag---y 327 (514)
T KOG2373 251 RVVGFQWKRFPVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAG---Y 327 (514)
T ss_pred HHHCEEEHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHCC---C
T ss_conf 6524000020688998536787726998568889823675676589986322440650043608999999999716---7
Q ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 4785550178899899999999999997299547
Q gi|254781149|r 200 RIPYLNLIRGEINQEQYRISQGICEKLQDFPLII 233 (266)
Q Consensus 200 ~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~I 233 (266)
. .++....+...+++..++|+|.
T Consensus 328 ----------r-l~drl~~y~HWadrFErlplyf 350 (514)
T KOG2373 328 ----------R-LLDRLNSYKHWADRFERLPLYF 350 (514)
T ss_pred ----------C-HHHHHHHHHHHHHHHHCCCHHH
T ss_conf ----------2-3755545667899875263676
No 39
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.76 E-value=3.2e-07 Score=70.62 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC------CCEEEECCCCCH-HHHHHHHH
Q ss_conf 511137777765-5301683688706874148899999999963022------323641167534-89999999
Q gi|254781149|r 125 IKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSG------HGVAFFSLEMDR-EKLGARAL 190 (266)
Q Consensus 125 i~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g------~~Vl~fSlEMs~-~ql~~R~l 190 (266)
||||.+.||.++ ||+..|.++-|.|-||.|||.|++++|.++.+.+ ..|+|+..|-+- .+-+.++.
T Consensus 1 isTG~~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~~i~ 74 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLA 74 (226)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 98874789988579988883999999999989999999999985422116999619999557753199999998
No 40
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.59 E-value=1.6e-07 Score=72.62 Aligned_cols=48 Identities=33% Similarity=0.337 Sum_probs=44.8
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 887068741488999999999630223236411675348999999996
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSN 192 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~ 192 (266)
++|.|.||.|||+|+++++.+.+++|.+|+|+|+|.+.+++..++-+.
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~l~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHC
T ss_conf 158768999999999999999987699789999507999999999983
No 41
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=98.56 E-value=1.4e-06 Score=66.12 Aligned_cols=130 Identities=22% Similarity=0.184 Sum_probs=87.3
Q ss_pred CCCCCCHHHHHHHHH--HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 678511137777765--530168368870687414889999999996302232364116753489999999963022323
Q gi|254781149|r 122 NPDIKWGLQSVDHLM--GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSS 199 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~--gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s 199 (266)
+.-||||-..||..+ ||+-.|-.+-|+|.||.|||+||++++.++-+.|..|+||..|-+-+.=..+-+ |
T Consensus 30 ~~~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD~E~a~d~~~a~~l----G---- 101 (322)
T pfam00154 30 VEVISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKL----G---- 101 (322)
T ss_pred CCEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHCCHHHHHHC----C----
T ss_conf 54461580899998758997787089998898777899999999999734993899853660598899980----9----
Q ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHHHHH---CCCEEECCCCCCHH-----------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 47855501788998999999999999972---99547479988989-----------99999999999947999864
Q gi|254781149|r 200 RIPYLNLIRGEINQEQYRISQGICEKLQD---FPLIIDDRPSPGIM-----------EFVHVANGLRNKHTKMVQLY 262 (266)
Q Consensus 200 ~I~~~~l~~g~l~~~e~~~i~~a~~~l~~---~pl~IdD~~~~ti~-----------~ira~aR~~k~k~~~~~~~~ 262 (266)
|+..++---.. +..+...+.++.+-+ ..+.|-|+-+..+. ++-.+||-|.+--+++...+
T Consensus 102 -VD~~~l~~~qp--d~~Eqal~i~~~li~~~~~~liViDSvaal~p~~E~e~~~~d~~~g~~Ar~ms~alRklt~~l 175 (322)
T pfam00154 102 -VDIDNLLVSQP--DTGEQALEIADMLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 175 (322)
T ss_pred -CCHHHEEEECC--CHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf -88025389778--839999999999853799765998253456768887524322321357999999999999997
No 42
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.52 E-value=2e-06 Score=64.96 Aligned_cols=130 Identities=23% Similarity=0.191 Sum_probs=89.6
Q ss_pred CCCCCCHHHHHHHHH--HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 678511137777765--530168368870687414889999999996302232364116753489999999963022323
Q gi|254781149|r 122 NPDIKWGLQSVDHLM--GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSS 199 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~--gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s 199 (266)
..-||||-..||..+ ||+-.|-.+-|+|.||.|||+||++++.++-+.|..|+||..|-+-+.=. +..+
T Consensus 33 ~~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk~gg~~~~iDaE~a~d~~~---a~~l------ 103 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVY---AKKL------ 103 (325)
T ss_pred CCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHCCCHHH---HHHC------
T ss_conf 5346268199999975899668808999889877799999999999873598399996254259899---9980------
Q ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHHHHH---CCCEEECCCCCCH-----------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47855501788998999999999999972---9954747998898-----------999999999999947999864
Q gi|254781149|r 200 RIPYLNLIRGEINQEQYRISQGICEKLQD---FPLIIDDRPSPGI-----------MEFVHVANGLRNKHTKMVQLY 262 (266)
Q Consensus 200 ~I~~~~l~~g~l~~~e~~~i~~a~~~l~~---~pl~IdD~~~~ti-----------~~ira~aR~~k~k~~~~~~~~ 262 (266)
+|+..++---. .+..+...+.++.+-+ ..+.|-|+-+..+ .++-.+||-|.+--+++....
T Consensus 104 GVD~~~l~~~q--p~~~Eq~l~i~~~li~s~~~dliViDSvaal~p~~E~e~~~~d~~vg~~ArlmskalRklt~~l 178 (325)
T cd00983 104 GVDLDNLLISQ--PDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSI 178 (325)
T ss_pred CCCHHHEEEEC--CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99846758966--6389999999999751588767998151123657887601132114389999999999999875
No 43
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=98.43 E-value=1.7e-05 Score=58.56 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=70.4
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH----C--CCCEEEECCCCC--HH---HHHHHH
Q ss_conf 678511137777765-53016836887068741488999999999630----2--232364116753--48---999999
Q gi|254781149|r 122 NPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAM----S--GHGVAFFSLEMD--RE---KLGARA 189 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~----~--g~~Vl~fSlEMs--~~---ql~~R~ 189 (266)
..-||||-+.||+++ ||+.+|.++=|.|.||.|||.|++++|.++.. . +..|+|+.-|-+ .+ |++++.
T Consensus 22 ~~~isTg~~~LD~lLgGGi~~g~ITEi~G~~gsGKTQlc~qlav~~qlp~~~gg~~g~vvyIDTEg~f~~eRl~qia~~~ 101 (261)
T pfam08423 22 VIRITTGSKELDKLLGGGIETGSITEVFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFRPERIVAIAERF 101 (261)
T ss_pred CCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 73577898789987379866772999989988878999999999940709656999728999368886989999999982
Q ss_pred HHHHHCCCCCCCCHHHCCC-CCCC-HHHHHHHHHHHHHHHHCC--CEEECC
Q ss_conf 9963022323478555017-8899-899999999999997299--547479
Q gi|254781149|r 190 LSNLLYPSSSRIPYLNLIR-GEIN-QEQYRISQGICEKLQDFP--LIIDDR 236 (266)
Q Consensus 190 ls~~t~~~~s~I~~~~l~~-g~l~-~~e~~~i~~a~~~l~~~p--l~IdD~ 236 (266)
+.+...+ ..++.- .-.+ ++.+..+......+.+-+ |-|-|+
T Consensus 102 -----~~~~~~~-L~~I~v~r~~~~~~~~~~l~~~~~~~~~~~v~LvVvDS 146 (261)
T pfam08423 102 -----GLDPEEV-LDNIAYARAYNTEHQMQLLLQAAAMMSESRFALLIVDS 146 (261)
T ss_pred -----CCCHHHH-HHHCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf -----9997898-75331416899899999999999987317834999832
No 44
>PRK09354 recA recombinase A; Provisional
Probab=98.33 E-value=1.3e-05 Score=59.41 Aligned_cols=131 Identities=21% Similarity=0.194 Sum_probs=89.8
Q ss_pred CCCCCCCHHHHHHHHH--HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 6678511137777765--53016836887068741488999999999630223236411675348999999996302232
Q gi|254781149|r 121 ENPDIKWGLQSVDHLM--GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSS 198 (266)
Q Consensus 121 ~~~Gi~TG~~~LD~~~--gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~ 198 (266)
.+.-||||--.||-.+ ||+-+|-++-|.|.+|.|||+||++++.++-+.|..++|+..|..-+--..+-+
T Consensus 37 ~v~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald~~~a~~l-------- 108 (350)
T PRK09354 37 DVETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKL-------- 108 (350)
T ss_pred CCCEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHC--------
T ss_conf 766544771789998758996787089998898777999999999999975994799960002798899984--------
Q ss_pred CCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCC---CEEECC-CCCC-H---------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34785550178899899999999999997299---547479-9889-8---------999999999999947999864
Q gi|254781149|r 199 SRIPYLNLIRGEINQEQYRISQGICEKLQDFP---LIIDDR-PSPG-I---------MEFVHVANGLRNKHTKMVQLY 262 (266)
Q Consensus 199 s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~p---l~IdD~-~~~t-i---------~~ira~aR~~k~k~~~~~~~~ 262 (266)
+|+..++---. .+..+...+.++.+-+.. +.|-|+ +.++ - .++-.+||-|.+--+++....
T Consensus 109 -GVd~d~llv~q--pd~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~pk~Eieg~mgd~~vG~qARlmSqalRKlt~~i 183 (350)
T PRK09354 109 -GVDIDNLLVSQ--PDTGEQALEIADALVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 183 (350)
T ss_pred -CCCHHHEEEEC--CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf -97715717856--8679999999999985488418998253345768887313354226389999999999999998
No 45
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=98.32 E-value=2e-05 Score=58.05 Aligned_cols=133 Identities=22% Similarity=0.151 Sum_probs=85.7
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 678511137777765-5301683688706874148899999999963022323641167534899999999630223234
Q gi|254781149|r 122 NPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSR 200 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~ 200 (266)
...++||-..||..+ ||+..|-.+=|.|.||+|||.++++++.++.+.|..|.|...|-+-.--..+-++... ..+
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~---~d~ 115 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL---LDN 115 (279)
T ss_pred CCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH---HCC
T ss_conf 66016550557877468865535899846887654668999988865379808999589998999999988754---215
Q ss_pred CCHHHCCCCCCCHHHHHHHHHHHHHHHH--CCCEEECC-CCCCHHH------HHHHHHHHHHHHHHHHHH
Q ss_conf 7855501788998999999999999972--99547479-9889899------999999999994799986
Q gi|254781149|r 201 IPYLNLIRGEINQEQYRISQGICEKLQD--FPLIIDDR-PSPGIME------FVHVANGLRNKHTKMVQL 261 (266)
Q Consensus 201 I~~~~l~~g~l~~~e~~~i~~a~~~l~~--~pl~IdD~-~~~ti~~------ira~aR~~k~k~~~~~~~ 261 (266)
+-. ....+-++...+.....++.. ..|.|-|+ ..+.-.+ +-.++|.|.+.-..+.++
T Consensus 116 l~v----~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~ 181 (279)
T COG0468 116 LLV----SQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRL 181 (279)
T ss_pred EEE----ECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 368----668977999999999987546887889982574346365548534899999999999999999
No 46
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.29 E-value=7e-06 Score=61.21 Aligned_cols=50 Identities=36% Similarity=0.494 Sum_probs=45.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 68870687414889999999996302232364116753489999999963
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNL 193 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~ 193 (266)
++.|.|.||.|||++++++|.+++.+|..|+|++.|.+.+|+..|+....
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~~~~~~~~~ 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGES 50 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 98999899998999999999998763997999986664489999999862
No 47
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=98.28 E-value=2.9e-05 Score=56.97 Aligned_cols=137 Identities=16% Similarity=0.206 Sum_probs=82.2
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC------CCCEEEECCCCCHH-----HHHHHH
Q ss_conf 678511137777765-530168368870687414889999999996302------23236411675348-----999999
Q gi|254781149|r 122 NPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMS------GHGVAFFSLEMDRE-----KLGARA 189 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~------g~~Vl~fSlEMs~~-----ql~~R~ 189 (266)
..-|+||-+.||+++ ||+..|.++=|.|-||.|||.|++++|.++... +..|+|+.-|-+-. |++.|.
T Consensus 82 ~~~isTg~~~lD~lLgGGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgtF~peRi~qia~~~ 161 (318)
T PRK04301 82 IGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENTFRPERIEQMAEGL 161 (318)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 78247888788805479833670788866887870356677676533767778988637999568986979999999984
Q ss_pred HHHHHCCCCCCCCHHHCC-CCCCC-HHHHHHHHHHHHHHHH-C--CCEEECCCC----------CCHHHHHHHHHHHHHH
Q ss_conf 996302232347855501-78899-8999999999999972-9--954747998----------8989999999999999
Q gi|254781149|r 190 LSNLLYPSSSRIPYLNLI-RGEIN-QEQYRISQGICEKLQD-F--PLIIDDRPS----------PGIMEFVHVANGLRNK 254 (266)
Q Consensus 190 ls~~t~~~~s~I~~~~l~-~g~l~-~~e~~~i~~a~~~l~~-~--pl~IdD~~~----------~ti~~ira~aR~~k~k 254 (266)
+.+...+ ..++. ..-.+ ++++..+..+..-+.+ . .|.|-|+-. -.+.+=..+..++-++
T Consensus 162 -----g~d~~~~-L~nI~v~r~~~~~~q~~~~~~~~~~~~~~~~v~LvVvDSi~alfR~e~~grg~l~~Rq~~L~~~l~~ 235 (318)
T PRK04301 162 -----GLDPDEV-LDNIHVARAYNSDHQMLLAEKAEELIKEGNNIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHD 235 (318)
T ss_pred -----CCCHHHH-HHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf -----9997898-6402686139989999999999999962788049999434232121046853099999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 4799986421
Q gi|254781149|r 255 HTKMVQLYRL 264 (266)
Q Consensus 255 ~~~~~~~~~~ 264 (266)
-.++.+.|++
T Consensus 236 L~~lA~~~ni 245 (318)
T PRK04301 236 LLRLADLYNA 245 (318)
T ss_pred HHHHHHHCCC
T ss_conf 9999998595
No 48
>PTZ00035 Rad51; Provisional
Probab=98.03 E-value=0.0019 Score=44.26 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=91.9
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC----C--CCEEEECCCCCHHHHHHHHHHH--
Q ss_conf 678511137777765-530168368870687414889999999996302----2--3236411675348999999996--
Q gi|254781149|r 122 NPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMS----G--HGVAFFSLEMDREKLGARALSN-- 192 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~----g--~~Vl~fSlEMs~~ql~~R~ls~-- 192 (266)
+.-|+||=..||+++ ||+..|.++=|.|-||.|||-+++++|.++-.- | ..|+|+..|-+-.- .|+...
T Consensus 109 ~~~itTGs~~LD~LLGGGiet~sITEi~Ge~gsGKTQlChqLaV~~QLP~~~GG~~GkvvYIDTEgtFrp--eRi~qIA~ 186 (350)
T PTZ00035 109 LIKFTTGSKQLDRLLKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKCLWIDTEGTFRP--ERIVAIAK 186 (350)
T ss_pred CEEECCCCHHHHHHHCCCEECCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCH--HHHHHHHH
T ss_conf 6035758578887627894138587897279897899999999990485777798862799968899878--99999998
Q ss_pred HHCCCCCCCCHHHCC--CCCCCHHHHHHHHHHHHHHHHCC--CEEECC----------CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 302232347855501--78899899999999999997299--547479----------9889899999999999994799
Q gi|254781149|r 193 LLYPSSSRIPYLNLI--RGEINQEQYRISQGICEKLQDFP--LIIDDR----------PSPGIMEFVHVANGLRNKHTKM 258 (266)
Q Consensus 193 ~t~~~~s~I~~~~l~--~g~l~~~e~~~i~~a~~~l~~~p--l~IdD~----------~~~ti~~ira~aR~~k~k~~~~ 258 (266)
.-+++...+ ..++. +.--.+++...+..+...+.+.+ |-|-|+ ..=.+.+=+.+..++-++..++
T Consensus 187 ~~gld~~~v-L~nI~~ara~n~ehq~~ll~~~~~~~~e~~vrLlIVDSitalFR~ef~GRgeLa~RQq~L~~~l~~L~~l 265 (350)
T PTZ00035 187 RYGLHPTDC-LNNIAYAKAYNCDHQTELLIDASAMMADARFALLIVDSATALYRSEYIGRGELATRQSHLCRFLRGLQRI 265 (350)
T ss_pred HCCCCHHHH-HHHEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 709997998-5332232206878899999999998511675899854456676654057014899999999999999999
Q ss_pred HHHHHH
Q ss_conf 986421
Q gi|254781149|r 259 VQLYRL 264 (266)
Q Consensus 259 ~~~~~~ 264 (266)
+..|++
T Consensus 266 A~~~nv 271 (350)
T PTZ00035 266 ADIYGV 271 (350)
T ss_pred HHHCCC
T ss_conf 998095
No 49
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.97 E-value=7.6e-05 Score=54.00 Aligned_cols=55 Identities=29% Similarity=0.292 Sum_probs=46.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHC----C--------CCEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 8368870687414889999999996302----2--------32364116753489999999963022
Q gi|254781149|r 142 RELILIGARPSMGKTTFALSTALHMAMS----G--------HGVAFFSLEMDREKLGARALSNLLYP 196 (266)
Q Consensus 142 g~LiviaaRP~mGKTa~alnia~~~a~~----g--------~~Vl~fSlEMs~~ql~~R~ls~~t~~ 196 (266)
|-+-+++|.||.|||.|++++|..+|.- | .+|+||++|-+.+++-.|+-+.....
T Consensus 1 G~v~~l~g~gG~GKS~lal~lAl~vA~G~~~~g~~~~~~~~G~Vly~~~Ed~~~~l~rRl~a~~~~~ 67 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 9389998089988899999999999759965689854687761999978899899999999999863
No 50
>PRK09519 recA recombinase A; Reviewed
Probab=97.88 E-value=0.0005 Score=48.29 Aligned_cols=130 Identities=22% Similarity=0.159 Sum_probs=92.5
Q ss_pred CCCCCCHHHHHHHHH--HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 678511137777765--530168368870687414889999999996302232364116753489999999963022323
Q gi|254781149|r 122 NPDIKWGLQSVDHLM--GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSS 199 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~--gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s 199 (266)
+.-||||--.||-.+ ||+-+|-.+=|-|.+|.|||++|++++.++-+.|..+.|+.-|..-+--..+-+
T Consensus 38 v~~IsTGSl~LD~ALGiGG~PrGRIvEIyGpESSGKTTLALH~IAeaQK~GG~aAfIDAEhAlDp~yA~~L--------- 108 (790)
T PRK09519 38 ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKL--------- 108 (790)
T ss_pred CCEECCCHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH---------
T ss_conf 54450461678887616884660499987897765899999999999853997999952002599999983---------
Q ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHHHHHC---CC-EEECCCCCCH----------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 478555017889989999999999999729---95-4747998898----------999999999999947999864
Q gi|254781149|r 200 RIPYLNLIRGEINQEQYRISQGICEKLQDF---PL-IIDDRPSPGI----------MEFVHVANGLRNKHTKMVQLY 262 (266)
Q Consensus 200 ~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~---pl-~IdD~~~~ti----------~~ira~aR~~k~k~~~~~~~~ 262 (266)
+|+..++---..+.. +..-+.++.|-+. .+ -||.-+.++. ..+-.+||-|.+-.+++....
T Consensus 109 GVdld~LLisQPdtG--EqALeIae~LIrSgavDlIVVDSVAALvPKaEieGemgD~~vGlQARLMSqALRKLT~~I 183 (790)
T PRK09519 109 GVDTDSLLVSQPDTG--EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 (790)
T ss_pred CCCHHHCEEECCCCH--HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 957678068579808--899999999985489548998053456878886164566428899999999999998776
No 51
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.87 E-value=4.3e-05 Score=55.76 Aligned_cols=69 Identities=28% Similarity=0.362 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHH-HHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 85111377777655-3016836887068741488999999999630223236411675348999999996
Q gi|254781149|r 124 DIKWGLQSVDHLMG-GVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSN 192 (266)
Q Consensus 124 Gi~TG~~~LD~~~g-G~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~ 192 (266)
-+++|-.+||+.+| |.--|.|++|-|--|-|||++.+.+++....+|+.|.+.|-||+..+....|-|.
T Consensus 9 ii~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl 78 (235)
T COG2874 9 IIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESL 78 (235)
T ss_pred HCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHC
T ss_conf 2067847778651699746769999888985488999999998870895489998403599999988863
No 52
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.71 E-value=3.7e-05 Score=56.20 Aligned_cols=98 Identities=22% Similarity=0.241 Sum_probs=66.8
Q ss_pred HHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHHCCCCCCCCHHHCC--
Q ss_conf 77765-53016836887068741488999999999630223236411675-348999999996302232347855501--
Q gi|254781149|r 132 VDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM-DREKLGARALSNLLYPSSSRIPYLNLI-- 207 (266)
Q Consensus 132 LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEM-s~~ql~~R~ls~~t~~~~s~I~~~~l~-- 207 (266)
||+++ ||..+|=.+=|=|.||.|||.+++..|.+++.+|+.|.|.--|= =.-| |+.+.... ...++..+.
T Consensus 1 iD~LLgGGvE~G~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEGGLS~E---R~~q~~~~---~~~D~e~~~~~ 74 (223)
T TIGR02237 1 IDELLGGGVERGIITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEGGLSPE---RFKQIAED---RALDPERVLSN 74 (223)
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH---HHHHHHHC---CCCCHHHHHCC
T ss_conf 9522058512035889875899867899999999998618958999628983289---99998630---58898888415
Q ss_pred ----C-CCCCHHHHHHHHHHHHHHHH----CCCEEECC
Q ss_conf ----7-88998999999999999972----99547479
Q gi|254781149|r 208 ----R-GEINQEQYRISQGICEKLQD----FPLIIDDR 236 (266)
Q Consensus 208 ----~-g~l~~~e~~~i~~a~~~l~~----~pl~IdD~ 236 (266)
+ -+|+ |+-..+.++..-+.+ ..|.|=|+
T Consensus 75 ~iv~~~~~f~-eQ~~ai~~~~~~~~~~G~~~~LvVvDs 111 (223)
T TIGR02237 75 VIVFEVFDFD-EQEVAIQKTSKLIDRDGDKADLVVVDS 111 (223)
T ss_pred EEEECCCCHH-HHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 3552353567-899999999999860688331488815
No 53
>PRK06526 transposase; Provisional
Probab=97.61 E-value=0.0075 Score=40.08 Aligned_cols=75 Identities=27% Similarity=0.301 Sum_probs=53.4
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 01683688706874148899999999963022323641167534899999999630223234785550178899899999
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRI 218 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~ 218 (266)
+..++=+|+-|.||.|||.+|..++..++.+|++|.|++. .+++.++.... . . .+
T Consensus 95 i~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~----~~L~~~L~~a~-------~------~--------g~ 149 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA----AQWVARLAAAH-------H------A--------GR 149 (254)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEH----HHHHHHHHHHH-------H------C--------CC
T ss_conf 7658878998999986899999999999986996799877----99999999988-------5------5--------80
Q ss_pred HHHHHHHHHHCCCEEECCCC
Q ss_conf 99999999729954747998
Q gi|254781149|r 219 SQGICEKLQDFPLIIDDRPS 238 (266)
Q Consensus 219 i~~a~~~l~~~pl~IdD~~~ 238 (266)
+.....++.+.++-|-|.=+
T Consensus 150 ~~~~~~~l~~~dLLIiDe~g 169 (254)
T PRK06526 150 LQDELVKLGRIPLLIVDEVG 169 (254)
T ss_pred HHHHHHHHHCCCEEEEECCC
T ss_conf 99999985136877650213
No 54
>PRK09183 transposase/IS protein; Provisional
Probab=97.23 E-value=0.00036 Score=49.26 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=41.6
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 016836887068741488999999999630223236411675348999999996
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSN 192 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~ 192 (266)
+..++=+|+-|.||+|||.+|..++..++.+|++|.||+ ..+++.++...
T Consensus 98 i~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~----~~~L~~~L~~a 147 (258)
T PRK09183 98 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT----AADLLLQLSTA 147 (258)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE----HHHHHHHHHHH
T ss_conf 655886799899998689999999999998799399978----99999999999
No 55
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.20 E-value=0.0052 Score=41.18 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=40.3
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 01683688706874148899999999963022323641167534899999999
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALS 191 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls 191 (266)
...++=+++-|.||.|||-+|..++..++.+|++|.|++.. +++.++-.
T Consensus 44 i~~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~----~L~~~l~~ 92 (178)
T pfam01695 44 IEQAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTP----DLVEQLKR 92 (178)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECH----HHHHHHHH
T ss_conf 21587689989999878999999999999869859999616----79999998
No 56
>PRK08116 hypothetical protein; Validated
Probab=97.19 E-value=0.0052 Score=41.19 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=63.8
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCC----------CCCCC---HHHCCCCCC
Q ss_conf 88706874148899999999963022323641167534899999999630223----------23478---555017889
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPS----------SSRIP---YLNLIRGEI 211 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~----------~s~I~---~~~l~~g~l 211 (266)
.++-|.||.|||-+|..||..+..+|++|+|++. .+++.++-+....-+ ..+++ ..++-....
T Consensus 111 Lll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~----~~ll~~lk~~~~~~~~~~~~e~l~~l~~~dLLIiDDlG~e~~ 186 (262)
T PRK08116 111 LLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNV----PELLNRIKSTYNSEGKEDENEIIRALDNADLLILDDLGAEKD 186 (262)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH----HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEHHCCCCC
T ss_conf 8998989998999999999999987993999889----999999999986356101999999861299899832214569
Q ss_pred CHHHHHHHHHHHHH-H-HHCCCEEECCCCCCHHHHHHH
Q ss_conf 98999999999999-9-729954747998898999999
Q gi|254781149|r 212 NQEQYRISQGICEK-L-QDFPLIIDDRPSPGIMEFVHV 247 (266)
Q Consensus 212 ~~~e~~~i~~a~~~-l-~~~pl~IdD~~~~ti~~ira~ 247 (266)
++...+.+...++. . .+.|+.| |+++++.++..+
T Consensus 187 t~w~~e~lf~IIn~Ry~~~kptIi--TTNl~~~eL~~~ 222 (262)
T PRK08116 187 TEWVREKLYNIIDSRYRKGLPTIF--TTNLSLEELKNQ 222 (262)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEE--ECCCCHHHHHHH
T ss_conf 878999999999999976999899--879999999998
No 57
>PRK12377 putative replication protein; Provisional
Probab=97.14 E-value=0.00063 Score=47.58 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=39.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 6836887068741488999999999630223236411675348999999996
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSN 192 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~ 192 (266)
.+.-+|+.|.||.|||-+|..|+..++.+|++|+|++. .+++.++-..
T Consensus 100 ~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~----~dLv~~L~~a 147 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV----PDVMSRLHES 147 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH----HHHHHHHHHH
T ss_conf 88608998999987889999999999987996999889----9999999999
No 58
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=97.11 E-value=0.0039 Score=42.11 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 8741488999999999630223236411675
Q gi|254781149|r 150 RPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180 (266)
Q Consensus 150 RP~mGKTa~alnia~~~a~~g~~Vl~fSlEM 180 (266)
.-|+|||+.+.|+|...|..|+.|+++.+.=
T Consensus 9 KGGvGKTTtavnLA~aLA~~G~rVllIDlDp 39 (261)
T pfam09140 9 KGGSGKSTTAVHVAVALLYLGARVATIDLDL 39 (261)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 8987299999999999998899789997999
No 59
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=97.10 E-value=0.0015 Score=44.94 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=43.5
Q ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC------EEEECCCCCHHHHHHHHHHHH
Q ss_conf 530168368870687414889999999996302232------364116753489999999963
Q gi|254781149|r 137 GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHG------VAFFSLEMDREKLGARALSNL 193 (266)
Q Consensus 137 gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~------Vl~fSlEMs~~ql~~R~ls~~ 193 (266)
.|--.|.-++++|.||.||||+|+.+|...... .| .=+||+||++.++.+..+---
T Consensus 45 ~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~-vPF~~i~gSEvyS~E~kKTE~L~qafRrs 106 (395)
T pfam06068 45 EGKIAGRAVLIAGPPGTGKTALAIAISKELGED-TPFCPISGSEVYSLEMKKTEALTQAFRKA 106 (395)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEEHHEEECCCCCHHHHHHHHHHHH
T ss_conf 277577389987799988899999999974879-97345001112125654889999999887
No 60
>PRK08181 transposase; Validated
Probab=97.08 E-value=0.00076 Score=47.02 Aligned_cols=79 Identities=20% Similarity=0.197 Sum_probs=53.0
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 01683688706874148899999999963022323641167534899999999630223234785550178899899999
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRI 218 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~ 218 (266)
...++=+|+-|.||.|||.+|..++..++.+|++|.|++. .+++..+.... . + ..
T Consensus 103 i~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~----~~L~~~L~~a~-------~-----------~---~~ 157 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT----TDLVQKLQVAR-------R-----------E---LQ 157 (269)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH----HHHHHHHHHHH-------H-----------C---CC
T ss_conf 8648708998999987889999999999987993999789----99999999977-------5-----------5---83
Q ss_pred HHHHHHHHHHCCCE-EECCCCCCHH
Q ss_conf 99999999729954-7479988989
Q gi|254781149|r 219 SQGICEKLQDFPLI-IDDRPSPGIM 242 (266)
Q Consensus 219 i~~a~~~l~~~pl~-IdD~~~~ti~ 242 (266)
+.....++.+.++- |||=+.+.+.
T Consensus 158 ~~~~~~~l~~~dLLIiDe~G~~~~~ 182 (269)
T PRK08181 158 LESAIAKLDKFDLLILDDLAYVTKD 182 (269)
T ss_pred HHHHHHHHHCCCEEEEHHCCCCCCC
T ss_conf 9999999744460122010566799
No 61
>KOG1433 consensus
Probab=97.04 E-value=0.0062 Score=40.68 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=47.7
Q ss_pred CCCCCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 366678511137777765-53016836887068741488999999999630223236411675
Q gi|254781149|r 119 EGENPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180 (266)
Q Consensus 119 ~~~~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEM 180 (266)
.+...-++||..+||+.+ ||+.-|.+..|-|.|+.|||.|.++++..+---...|+|.-.|=
T Consensus 87 ~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s 149 (326)
T KOG1433 87 RSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTES 149 (326)
T ss_pred HCCCEEECCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCH
T ss_conf 167625415505566774267555835688558984477888899887068751189995211
No 62
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.04 E-value=0.00079 Score=46.92 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=31.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 688706874148899999999963022323641167
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlE 179 (266)
++++.|.-|+|||++|.|+|...|..|++|+++|+.
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~~G~rvLlvs~D 36 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTD 36 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 989978996619999999999999689949999589
No 63
>PRK06921 hypothetical protein; Provisional
Probab=97.00 E-value=0.015 Score=38.05 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=63.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHCCC-----CCCCC---HHHC-----CCC
Q ss_conf 68870687414889999999996302-2323641167534899999999630223-----23478---5550-----178
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMS-GHGVAFFSLEMDREKLGARALSNLLYPS-----SSRIP---YLNL-----IRG 209 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~-g~~Vl~fSlEMs~~ql~~R~ls~~t~~~-----~s~I~---~~~l-----~~g 209 (266)
=+.+.|.||.|||-++..||.....+ |.+|+||+ ..+++..+-....... .-.++ -.++ -..
T Consensus 118 ~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~----~~~~~~~lk~~~~~~~~~l~~~~~~dlLIIDDLfk~~~G~e 193 (265)
T PRK06921 118 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP----FVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKP 193 (265)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE----HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 27997289898899999999999996297199988----79999999988888999999863299999822122347987
Q ss_pred CCCHHHHHHHHHHHH-H-HHHCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 899899999999999-9-97299547479988989999999999
Q gi|254781149|r 210 EINQEQYRISQGICE-K-LQDFPLIIDDRPSPGIMEFVHVANGL 251 (266)
Q Consensus 210 ~l~~~e~~~i~~a~~-~-l~~~pl~IdD~~~~ti~~ira~aR~~ 251 (266)
..++...+.+-..++ + +.+.|+.| ++++++.+|...-.++
T Consensus 194 ~~te~~~~~lf~iIN~Ry~~~kptIi--SSNl~~~~L~~i~e~i 235 (265)
T PRK06921 194 RATEWQIEQTYSVVNYRYLNHKPILI--SSELTIDELLDIDEAL 235 (265)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEE--ECCCCHHHHHHHHHHH
T ss_conf 89889999999999999976999899--8689989998763798
No 64
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.97 E-value=0.002 Score=44.05 Aligned_cols=59 Identities=27% Similarity=0.336 Sum_probs=45.3
Q ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 5301683688706874148899999999963022-----3236411675348999999996302
Q gi|254781149|r 137 GGVQLRELILIGARPSMGKTTFALSTALHMAMSG-----HGVAFFSLEMDREKLGARALSNLLY 195 (266)
Q Consensus 137 gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g-----~~Vl~fSlEMs~~ql~~R~ls~~t~ 195 (266)
.|-..|.-+.++|.||.||||+|+.||......- ...=+||+||++.+..+..+----|
T Consensus 60 ~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~RraIG 123 (450)
T COG1224 60 QGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRAIG 123 (450)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf 1766661799978999768899999999858999821501332233100088999999998645
No 65
>TIGR02655 circ_KaiC circadian clock protein KaiC; InterPro: IPR013503 The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of the KaiC domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. Kai proteins (KaiA and KaiC) appear to positively and negatively regulate kaiBC transcription which is consistent with a transcription/translation oscillatory (TTO) feedback model, believed to be at the core of all self-sustained circadian timers. However, the cyanobacterial circadian clock is able to function without de novo synthesis of clock gene mRNAs and the clock proteins, and the period is accurately determined without TTO feedback and the system is also temperature-compensated. It has been demonstrated that these three purified proteins form a temperature-compensated molecular oscillator in vitro that exhibits rhythmic phosphorylation and dephosphorylation of KaiC. A negative-stain electron microscopy study of Synechococcus elongatus and Thermosynechococcus elongatus BP-1 KaiAKaiC complexes in combination with site-directed mutagenesis reveals that KaiA binds exclusively to the CII half of the KaiC hexamer. The EM-based model of the KaiAKaiC complex reveals proteinprotein interactions at two sites: the known interaction of the flexible C-terminal KaiC peptide with KaiA, and a second postulated interaction between the apical region of KaiA and the ATP binding cleft on KaiC. This model brings KaiA mutation sites that alter clock period or abolish rhythmicity into contact with KaiC and suggests how KaiA might regulate KaiC phosphorylation . ; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0042752 regulation of circadian rhythm, 0045449 regulation of transcription.
Probab=96.89 E-value=0.0016 Score=44.84 Aligned_cols=117 Identities=20% Similarity=0.263 Sum_probs=82.7
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 678511137777765-5301683688706874148899999999963022323641167534899999999630223234
Q gi|254781149|r 122 NPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSR 200 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~ 200 (266)
..-+++|...||.+. |||-.-..++..|-+|.|||-+...+..+++.++...++|..|-++.|+..-..| .+
T Consensus 242 n~rvssGv~~ld~mCGGGff~dsiil~tGatGtGktllvs~f~~~~C~n~~railfayeesraql~rn~~s-------WG 314 (484)
T TIGR02655 242 NVRVSSGVKRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEDACKNKERAILFAYEESRAQLLRNAYS-------WG 314 (484)
T ss_pred CCEEHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCC-------CC
T ss_conf 40210004666432178512103567625777660556667888641467735888511346777523320-------14
Q ss_pred CCHHHCCCCCC------------CHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 78555017889------------989999999999999729954747998898999999999999
Q gi|254781149|r 201 IPYLNLIRGEI------------NQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFVHVANGLRN 253 (266)
Q Consensus 201 I~~~~l~~g~l------------~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k~ 253 (266)
|+...+....| -++....+..-+...+ .+.+.|+.+-+-||-+..
T Consensus 315 ~dfe~~e~~~llki~C~yPes~Gledhlq~ik~~i~~fk--------P~r~~idslsalarGvs~ 371 (484)
T TIGR02655 315 IDFEELEQQGLLKIICAYPESAGLEDHLQIIKSEIAEFK--------PARIAIDSLSALARGVSN 371 (484)
T ss_pred CCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHH
T ss_conf 437885003723777707774661789999987774238--------530015657777532122
No 66
>PRK09401 reverse gyrase; Reviewed
Probab=96.87 E-value=0.0049 Score=41.36 Aligned_cols=88 Identities=22% Similarity=0.220 Sum_probs=58.5
Q ss_pred CCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 11137777765-5301683688706874148899999999963022323-641167534899999999630223234785
Q gi|254781149|r 126 KWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGV-AFFSLEMDREKLGARALSNLLYPSSSRIPY 203 (266)
Q Consensus 126 ~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~V-l~fSlEMs~~ql~~R~ls~~t~~~~s~I~~ 203 (266)
|||.+ ++. .=+-.|+-..|-|.||||||+|.+-++...|.+|+.+ ++|-.--=..|+..|+....- ..+++-
T Consensus 79 ~w~~Q---r~WakR~~~g~SFaiiAPTG~GKTtfgl~~sly~a~kgkks~~i~PT~~Lv~Q~~~kl~~~~~---~~~~~~ 152 (1176)
T PRK09401 79 PWSLQ---RTWAKRLLLGESFAIIAPTGVGKTTFGLVMALYLAKKGKKSYIIFPTRLLVEQVVEKLRKLAE---KVGVKV 152 (1176)
T ss_pred CCHHH---HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHH---HHCCCC
T ss_conf 84889---999999866897489888998888999999999986598399996888999999999999999---709984
Q ss_pred HH-CCCCCCCHHHHHHH
Q ss_conf 55-01788998999999
Q gi|254781149|r 204 LN-LIRGEINQEQYRIS 219 (266)
Q Consensus 204 ~~-l~~g~l~~~e~~~i 219 (266)
.- ...+.++..+.+..
T Consensus 153 ~~~~y~~~~~~~~kee~ 169 (1176)
T PRK09401 153 RLLYYHSSLKKKEKEEF 169 (1176)
T ss_pred EEEEEECCCCHHHHHHH
T ss_conf 08998567766678999
No 67
>PRK13764 ATPase; Provisional
Probab=96.86 E-value=0.0012 Score=45.69 Aligned_cols=42 Identities=38% Similarity=0.388 Sum_probs=33.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf 68368870687414889999999996302232364116753489
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREK 184 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~q 184 (266)
..+=|+|+|.||+|||+||..+|...+..|+-| =++|-|++-
T Consensus 258 ~a~GilIaG~PGaGKsTfaqalA~~~~~~g~iV--KTmEsPRDl 299 (605)
T PRK13764 258 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIV--KTMESPRDL 299 (605)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE--EECCCCCCC
T ss_conf 366499977999977899999999998479789--832486236
No 68
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.83 E-value=0.0076 Score=40.07 Aligned_cols=50 Identities=34% Similarity=0.355 Sum_probs=42.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 68368870687414889999999996302232364116753489999999
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARAL 190 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~l 190 (266)
++..++|.|.||.|||+++..+|.+....+.+|.+++.+...........
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL 50 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH
T ss_conf 99789999999702999999999872668996899875998988898765
No 69
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.81 E-value=0.0044 Score=41.68 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=52.8
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHH--C--C------CCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC
Q ss_conf 016836887068741488999999999630--2--2------32364116753489999999963022323478555017
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMAM--S--G------HGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIR 208 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a~--~--g------~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~ 208 (266)
|..|-..+|+|-.|.|||+++|.++.+++. + | ..|+|.|+|-+.+++..|+-..+.+ -+++..++++
T Consensus 86 fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~---mgLsPadvrn 162 (402)
T COG3598 86 FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRAR---MGLSPADVRN 162 (402)
T ss_pred HHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_conf 6517058984488623768999999999864777453355888079998226868899999999987---0998576322
Q ss_pred CCC
Q ss_conf 889
Q gi|254781149|r 209 GEI 211 (266)
Q Consensus 209 g~l 211 (266)
=.+
T Consensus 163 ~dl 165 (402)
T COG3598 163 MDL 165 (402)
T ss_pred EEC
T ss_conf 000
No 70
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.76 E-value=0.023 Score=36.65 Aligned_cols=98 Identities=11% Similarity=0.185 Sum_probs=57.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCC---------CCCCH---HHCCCCCC
Q ss_conf 6887068741488999999999630223236411675348999999996302232---------34785---55017889
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSS---------SRIPY---LNLIRGEI 211 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~---------s~I~~---~~l~~g~l 211 (266)
=.++-|.||.|||-+|..||..+..+|++|+|++. .+++.|+-+....-.. .+++. ..+=....
T Consensus 98 gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~----~dLl~~lr~t~~~~~~~e~~~l~~l~~~dLLIiDdlG~e~~ 173 (242)
T PRK07952 98 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV----ADIMSAMKDTFRNSETSEEQLLNDLSNVDLLVIDEIGVQTE 173 (242)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH----HHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 17997899997899999999999987994999779----99999999998068756999999863189898730146658
Q ss_pred CHHHHHHHHHHHH-HH-HHCCCEEECCCCCCHHHHHHH
Q ss_conf 9899999999999-99-729954747998898999999
Q gi|254781149|r 212 NQEQYRISQGICE-KL-QDFPLIIDDRPSPGIMEFVHV 247 (266)
Q Consensus 212 ~~~e~~~i~~a~~-~l-~~~pl~IdD~~~~ti~~ira~ 247 (266)
++.+...+...++ +. ...|..| +.++++.++...
T Consensus 174 t~~~~~~lf~iId~Ry~~~kp~Ii--tTNl~~~eL~~~ 209 (242)
T PRK07952 174 SRYEKVIINQIVDRRSSSKRPTGM--LTNSNMEEMTKL 209 (242)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEE--EECCCHHHHHHH
T ss_conf 888999999999999971698899--817999999999
No 71
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0093 Score=39.45 Aligned_cols=84 Identities=17% Similarity=0.116 Sum_probs=57.5
Q ss_pred HHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCC
Q ss_conf 77765-5301683688706874148899999999963022323-641167534899999999630223234785550178
Q gi|254781149|r 132 VDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGV-AFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRG 209 (266)
Q Consensus 132 LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~V-l~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g 209 (266)
+.++. .-+-+|+-.-|-|.||+|||+|.+-++...|.+|+.| .+|-..-=..|...|+-...-....-++... .++
T Consensus 86 ~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~--yh~ 163 (1187)
T COG1110 86 AQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV--YHS 163 (1187)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEE--ECC
T ss_conf 889999998737844898278876547999999998755874999966789999999999998865378524665--312
Q ss_pred CCCHHHHH
Q ss_conf 89989999
Q gi|254781149|r 210 EINQEQYR 217 (266)
Q Consensus 210 ~l~~~e~~ 217 (266)
.|...+.+
T Consensus 164 ~l~~~eke 171 (1187)
T COG1110 164 ALPTKEKE 171 (1187)
T ss_pred CCCHHHHH
T ss_conf 36657799
No 72
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.72 E-value=0.066 Score=33.52 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC-----CEEEEC
Q ss_conf 99999999998630366678511137777765530--16836887068741488999999999630223-----236411
Q gi|254781149|r 105 AATTAMKSAEQQKKEGENPDIKWGLQSVDHLMGGV--QLRELILIGARPSMGKTTFALSTALHMAMSGH-----GVAFFS 177 (266)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gG~--~~g~LiviaaRP~mGKTa~alnia~~~a~~g~-----~Vl~fS 177 (266)
.+............+|....+---=.++++++.=+ +..+=.|+-|-||+||||.+-.+|..++.... .+-+||
T Consensus 155 ~L~~y~~dLT~~A~~gklDpviGRd~Ei~r~i~IL~Rr~KNNpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~ 234 (852)
T TIGR03346 155 ALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEE
T ss_conf 89999888999998289997738369999999999873248972127999879999999999986699997885185127
Q ss_pred CCCCHH
Q ss_conf 675348
Q gi|254781149|r 178 LEMDRE 183 (266)
Q Consensus 178 lEMs~~ 183 (266)
|.|+.-
T Consensus 235 LDlg~L 240 (852)
T TIGR03346 235 LDMGAL 240 (852)
T ss_pred EEHHHH
T ss_conf 528877
No 73
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=96.71 E-value=0.0024 Score=43.51 Aligned_cols=58 Identities=17% Similarity=0.061 Sum_probs=25.1
Q ss_pred CEEEEECCCCHHHHHHHHHHH------HHHHHCCC---CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 368870687414889999999------99630223---236411675348999999996302232347855
Q gi|254781149|r 143 ELILIGARPSMGKTTFALSTA------LHMAMSGH---GVAFFSLEMDREKLGARALSNLLYPSSSRIPYL 204 (266)
Q Consensus 143 ~LiviaaRP~mGKTa~alnia------~~~a~~g~---~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~ 204 (266)
|.||+=..| .|-|-=.|.+- ........ -+++..-|.-.-.=+.|.+..+. ..+|+..
T Consensus 126 D~IViDtaP-TGhtLrlL~lP~~l~~~~~~L~d~~~t~~~lV~~PE~~~v~Et~R~~~~L~---~~~i~v~ 192 (254)
T cd00550 126 DVVVFDTAP-TGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELA---KYGIDVD 192 (254)
T ss_pred CEEEECCCC-CHHHHHHHHCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH---HCCCCCC
T ss_conf 889988998-567998751569999999853795655899997787216999999999999---7799989
No 74
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.66 E-value=0.0019 Score=44.28 Aligned_cols=53 Identities=30% Similarity=0.329 Sum_probs=38.9
Q ss_pred HHHHH-HHH-CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf 77765-530-16836887068741488999999999630223236411675348999
Q gi|254781149|r 132 VDHLM-GGV-QLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLG 186 (266)
Q Consensus 132 LD~~~-gG~-~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~ 186 (266)
||..+ --+ .+.+=|+|||.||+|||+||..+|...+.+|+-| =++|-|++-..
T Consensus 251 L~dkl~eRL~eraeGILIAG~PGaGKsTFaqAlAefy~~~GkiV--KTmEsPRDl~v 305 (604)
T COG1855 251 LSDKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYASQGKIV--KTMESPRDLQV 305 (604)
T ss_pred CCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEE--EECCCCCCCCC
T ss_conf 79899999886416469956999974689999999998669688--63247513568
No 75
>PRK06696 uridine kinase; Validated
Probab=96.65 E-value=0.0052 Score=41.19 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHCCCC--EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 377777655301683--688706874148899999999963022323641167
Q gi|254781149|r 129 LQSVDHLMGGVQLRE--LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~--LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlE 179 (266)
+.+|=+.+..++|+. +|-|+|.||.|||+||-.++......|.+|+.+++.
T Consensus 11 ~~~~~~~i~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~D 63 (227)
T PRK06696 11 VKEIANHILTLNLTRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRASID 63 (227)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 99999999835999868999778998787999999999997469948997154
No 76
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.62 E-value=0.0099 Score=39.25 Aligned_cols=118 Identities=16% Similarity=0.165 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC----CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 37777765530168368870687414889999999996302----23236411675348999999996302232347855
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMS----GHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYL 204 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~----g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~ 204 (266)
.+.|+++.--+.+|+++.|.|+-|.|||+|...+....... ..+......-...+++. .+... ....++..
T Consensus 8 ~~aL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~---~l~~~~l~ 82 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQ--FLIDV---GLGYLTLG 82 (176)
T ss_pred EECCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEHHHHH--HHHHC---CCCCCCCC
T ss_conf 35467548788899899999999998999999888761031120321013755368857799--99974---88667789
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHCC--CEEECCCCCCH-----HHHHHHHHHHH
Q ss_conf 50178899899999999999997299--54747998898-----99999999999
Q gi|254781149|r 205 NLIRGEINQEQYRISQGICEKLQDFP--LIIDDRPSPGI-----MEFVHVANGLR 252 (266)
Q Consensus 205 ~l~~g~l~~~e~~~i~~a~~~l~~~p--l~IdD~~~~ti-----~~ira~aR~~k 252 (266)
. +-..|+-.|.+|+.=|..-+.+.+ ++|-|.|.-.+ .+|....|+++
T Consensus 83 ~-~~~~LSGGqkQRvaiAraL~~~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~ 136 (176)
T cd03238 83 Q-KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI 136 (176)
T ss_pred C-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9-16868999999999999998689986899717744589879999999999999
No 77
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.56 E-value=0.022 Score=36.87 Aligned_cols=88 Identities=23% Similarity=0.296 Sum_probs=61.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHH-CCC-CEEEECCCCCH----HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHH
Q ss_conf 6836887068741488999999999630-223-23641167534----89999999963022323478555017889989
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAM-SGH-GVAFFSLEMDR----EKLGARALSNLLYPSSSRIPYLNLIRGEINQE 214 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~-~g~-~Vl~fSlEMs~----~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~ 214 (266)
++-.+.+.|.+|+|||+..--+|-+.+. .|+ +|.++|+.==+ +|| |..+.+ .+||..-.. +.+
T Consensus 209 ~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQL--k~Ya~i-----lgvp~~v~~----~~~ 277 (412)
T PRK05703 209 QGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQL--KTYAKI-----MGIPVKVAY----DPK 277 (412)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH--HHHHHH-----CCCEEEEEC----CHH
T ss_conf 673699988888756769999999999972998179998376777799999--999997-----197379847----999
Q ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 9999999999997299547479988989
Q gi|254781149|r 215 QYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 215 e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
+ +..++.++++..+-+-||++.+-.
T Consensus 278 ~---l~~al~~~~~~dlILIDTaG~s~~ 302 (412)
T PRK05703 278 E---LAKALEQLANCDLILIDTAGRSQR 302 (412)
T ss_pred H---HHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 9---999998715899799968988978
No 78
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.54 E-value=0.017 Score=37.69 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=55.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHC-C-CCEEEECCCCC---HHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 68368870687414889999999996302-2-32364116753---4899999999630223234785550178899899
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMS-G-HGVAFFSLEMD---REKLGARALSNLLYPSSSRIPYLNLIRGEINQEQ 215 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~-g-~~Vl~fSlEMs---~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e 215 (266)
.+-.+.+.|.+|+|||+...-+|-+.+.. | +.|.++|+.=- +.+-. |..|.+ .+||..-.. +.++
T Consensus 193 ~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQL-k~ya~i-----l~vp~~vv~----~~~~ 262 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQL-KTYAKI-----LGVPVKVAR----DPKE 262 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-HHHHHH-----HCCEEEEEC----CHHH
T ss_conf 672799977888757889999999999973899679998077767899999-999999-----597489939----9999
Q ss_pred HHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 99999999999729954747998
Q gi|254781149|r 216 YRISQGICEKLQDFPLIIDDRPS 238 (266)
Q Consensus 216 ~~~i~~a~~~l~~~pl~IdD~~~ 238 (266)
+..++.++++..+-+-||++
T Consensus 263 ---l~~~l~~~~~~d~IlIDTaG 282 (282)
T TIGR03499 263 ---LAKALERLRDKDLILIDTAG 282 (282)
T ss_pred ---HHHHHHHCCCCCEEEEECCC
T ss_conf ---99999865798999981979
No 79
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.54 E-value=0.086 Score=32.72 Aligned_cols=126 Identities=16% Similarity=0.239 Sum_probs=70.2
Q ss_pred HHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC-----CEEEECCCCCHH--------HHHHHHHHHH
Q ss_conf 37777765530--16836887068741488999999999630223-----236411675348--------9999999963
Q gi|254781149|r 129 LQSVDHLMGGV--QLRELILIGARPSMGKTTFALSTALHMAMSGH-----GVAFFSLEMDRE--------KLGARALSNL 193 (266)
Q Consensus 129 ~~~LD~~~gG~--~~g~LiviaaRP~mGKTa~alnia~~~a~~g~-----~Vl~fSlEMs~~--------ql~~R~ls~~ 193 (266)
=.++.+++.=+ +..+=.|+-|-||+||||.+-.+|..++.... .+-+|||.|+.- |.-.|+-+.+
T Consensus 184 d~EI~r~i~IL~RR~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~LDlg~L~AGakyRGeFEeRLk~il 263 (857)
T PRK10865 184 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVL 263 (857)
T ss_pred HHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999997025789975878999889999999999998389997881690247338878614765211799999999
Q ss_pred HCC---------------------------CCCCCCHHHCCCCCC------CHHHHHHHHHHHHHHHH--CCCEEECCCC
Q ss_conf 022---------------------------323478555017889------98999999999999972--9954747998
Q gi|254781149|r 194 LYP---------------------------SSSRIPYLNLIRGEI------NQEQYRISQGICEKLQD--FPLIIDDRPS 238 (266)
Q Consensus 194 t~~---------------------------~~s~I~~~~l~~g~l------~~~e~~~i~~a~~~l~~--~pl~IdD~~~ 238 (266)
..+ +.+++=-+.+.+|++ +.+|++++.+--.-+.+ -++.|+.
T Consensus 264 ~ev~~~~~~iILFIDEiHtlvGaG~~~G~~DaaNlLKPaLaRGelr~IGATT~~EYrk~iEkD~AL~RRFq~V~V~E--- 340 (857)
T PRK10865 264 NDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAE--- 340 (857)
T ss_pred HHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCHHHHHHCCCCCCCC---
T ss_conf 99984789869997343543368877775347888678873798549994589999987134588998537100689---
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 8989999999999999479
Q gi|254781149|r 239 PGIMEFVHVANGLRNKHTK 257 (266)
Q Consensus 239 ~ti~~ira~aR~~k~k~~~ 257 (266)
+|..+-....|.++.+|+.
T Consensus 341 Ps~e~ti~ILrgl~~~yE~ 359 (857)
T PRK10865 341 PSVEDTIAILRGLKERYEL 359 (857)
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 9879999999988889987
No 80
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.54 E-value=0.012 Score=38.76 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=81.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECC---CCCHHHHHHHHHHHHHCCCCCCCCHHHC
Q ss_conf 7777765530168368870687414889999999996302232364116---7534899999999630223234785550
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSL---EMDREKLGARALSNLLYPSSSRIPYLNL 206 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSl---EMs~~ql~~R~ls~~t~~~~s~I~~~~l 206 (266)
+.||++---+.+|+.+.|-|.-|.|||++.-.++--.-...-.|.|..- .|+..++..++ +.... ....+....+
T Consensus 13 ~il~~is~~i~~Ge~~~liG~nGsGKTTLl~~i~G~~~~~~G~I~~~g~~i~~~~~~~~~~~i-~~v~Q-~l~~~~l~~~ 90 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKI-AYVPQ-ALELLGLAHL 90 (180)
T ss_pred EEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC-CHHHH-HHHHCCCHHH
T ss_conf 988043778869979999989998899999999579899872899999998969999995546-49999-9998599778
Q ss_pred CC---CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHHHHHH
Q ss_conf 17---8899899999999999997299547479988989-----9999999999994
Q gi|254781149|r 207 IR---GEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGLRNKH 255 (266)
Q Consensus 207 ~~---g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~k~k~ 255 (266)
.. ..|+..+.+++.-|..-+.+-.+.|-|.|.-.++ +|....+.+.+++
T Consensus 91 ~~~~~~~LSGGqkQrv~iA~aL~~~P~ililDEPts~LD~~~~~~i~~~i~~l~~~~ 147 (180)
T cd03214 91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARER 147 (180)
T ss_pred HCCCHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 649910379999999999999986896478858754479999999999999999846
No 81
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.52 E-value=0.087 Score=32.66 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=39.6
Q ss_pred HHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC-----EEEECCCCCHH
Q ss_conf 37777765530--168368870687414889999999996302232-----36411675348
Q gi|254781149|r 129 LQSVDHLMGGV--QLRELILIGARPSMGKTTFALSTALHMAMSGHG-----VAFFSLEMDRE 183 (266)
Q Consensus 129 ~~~LD~~~gG~--~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~-----Vl~fSlEMs~~ 183 (266)
=.++.+++.=+ +..+=.|+-|-||+||||.+-.+|..++....| .-+|||.|+.-
T Consensus 193 d~EI~r~iqIL~Rr~KNNPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg~L 254 (852)
T TIGR03345 193 DDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL 254 (852)
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHH
T ss_conf 99999999999862479974657999879999999999997699986774385678678888
No 82
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.45 E-value=0.034 Score=35.53 Aligned_cols=88 Identities=22% Similarity=0.206 Sum_probs=53.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH--HHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHH-
Q ss_conf 68870687414889999999996302232364116753489999--999963022323478555017889989999999-
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGA--RALSNLLYPSSSRIPYLNLIRGEINQEQYRISQ- 220 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~--R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~- 220 (266)
.|.+.|.||+|||+..--+|.....+|++|.+.+..=-+--=.+ |..+.+ .+||...... .+++..+.
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~-----l~v~~~~~~~----~~~~~~~~~ 72 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQ-----VGVPVFEEGE----GKDPVSIAK 72 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH-----CCCEEEECCC----CCCHHHHHH
T ss_conf 9999899999889999999999997699289997488757799999999997-----4985992277----558799999
Q ss_pred HHHHH--HHHCCCEEECCCCCC
Q ss_conf 99999--972995474799889
Q gi|254781149|r 221 GICEK--LQDFPLIIDDRPSPG 240 (266)
Q Consensus 221 ~a~~~--l~~~pl~IdD~~~~t 240 (266)
++... .++..+-+-||++.+
T Consensus 73 ~~~~~~~~~~~D~IlIDTaGr~ 94 (173)
T cd03115 73 RAIEHAREENFDVVIVDTAGRL 94 (173)
T ss_pred HHHHHHHHCCCCEEEEECCCCC
T ss_conf 9999987568998999788878
No 83
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.44 E-value=0.038 Score=35.15 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=55.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH--HHHHHHHCCCCCCCCHHHCCCCCCCHHHH-HHHH
Q ss_conf 68870687414889999999996302232364116753489999--99996302232347855501788998999-9999
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGA--RALSNLLYPSSSRIPYLNLIRGEINQEQY-RISQ 220 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~--R~ls~~t~~~~s~I~~~~l~~g~l~~~e~-~~i~ 220 (266)
.|.+.|.+|+|||+...-+|.....+|++|.+.|..=-+--=.+ |..+.+ .+++......+ +++ ..+.
T Consensus 3 vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~-----l~v~~~~~~~~----~d~~~~~~ 73 (196)
T pfam00448 3 VILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAER-----LGVPVFGSGTG----SDPAAVAF 73 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH-----CCCEEEECCCC----CCHHHHHH
T ss_conf 9999899999889999999999997799289997587768899999999986-----39817814877----78789999
Q ss_pred HHHHHH--HHCCCEEECCCCCCH
Q ss_conf 999999--729954747998898
Q gi|254781149|r 221 GICEKL--QDFPLIIDDRPSPGI 241 (266)
Q Consensus 221 ~a~~~l--~~~pl~IdD~~~~ti 241 (266)
++.+.. ++..+-+-|||+.+-
T Consensus 74 ~~l~~~~~~~~D~IlIDTaGr~~ 96 (196)
T pfam00448 74 DAVEKAKAENYDVVLVDTAGRLQ 96 (196)
T ss_pred HHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99999884689999998999874
No 84
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=96.39 E-value=0.014 Score=38.20 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=63.4
Q ss_pred HHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCE-EEECCCCCHHHHHHHHHHHHHCCCCCCCCH---H
Q ss_conf 777765-530168368870687414889999999996302-2323-641167534899999999630223234785---5
Q gi|254781149|r 131 SVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMS-GHGV-AFFSLEMDREKLGARALSNLLYPSSSRIPY---L 204 (266)
Q Consensus 131 ~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~-g~~V-l~fSlEMs~~ql~~R~ls~~t~~~~s~I~~---~ 204 (266)
++-++. .=+-+|+-.=|-|.+|+|||+|.+-++...|.+ |+.| .+|-.+.=..|++.|+-+..- ..++.. .
T Consensus 87 s~Qk~WAKRv~~~~SFai~APTGVGKttFG~~mslflA~kKGkR~y~ilPT~lLv~Qv~~kl~~~~~---k~g~~~~~l~ 163 (1843)
T TIGR01054 87 SIQKSWAKRVLKGDSFAIVAPTGVGKTTFGLVMSLFLAKKKGKRSYIILPTTLLVKQVAEKLSSLAE---KEGVGIVRLL 163 (1843)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCC---CCCCCCEEEE
T ss_conf 5679999996417964898058876779999999998654298789994707889999999875200---2575000022
Q ss_pred HCCCCCCCHHHHHHHHH
Q ss_conf 50178899899999999
Q gi|254781149|r 205 NLIRGEINQEQYRISQG 221 (266)
Q Consensus 205 ~l~~g~l~~~e~~~i~~ 221 (266)
...+++|...+.+.+.+
T Consensus 164 ~~yhS~L~~~~kke~~E 180 (1843)
T TIGR01054 164 GAYHSKLSTKEKKEVKE 180 (1843)
T ss_pred EEEECCCCHHHHHHHHH
T ss_conf 21011265456788999
No 85
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=96.39 E-value=0.0074 Score=40.15 Aligned_cols=50 Identities=12% Similarity=0.150 Sum_probs=43.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf 16836887068741488999999999630223236411675348999999
Q gi|254781149|r 140 QLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARA 189 (266)
Q Consensus 140 ~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ 189 (266)
.+.-|.|..+.||-|||++|.|+|...|..|+.|++.-..|-+-.+...+
T Consensus 102 ~~~~LaItS~~pGEGKS~vAaNLA~~~Aq~G~RvLLVDaDLRrP~lh~~f 151 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNF 151 (274)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
T ss_conf 88389996899999899999999999996799199995888884477975
No 86
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=96.36 E-value=0.008 Score=39.91 Aligned_cols=46 Identities=28% Similarity=0.344 Sum_probs=41.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf 6887068741488999999999630223236411675348999999
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARA 189 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ 189 (266)
+.|-.+.||-|||+.+.|+|...|..|+.|++.-..|-+-.+..++
T Consensus 534 i~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~ 579 (726)
T PRK09841 534 LMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLF 579 (726)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHC
T ss_conf 9997799999779999999999984799599982887771077615
No 87
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.32 E-value=0.0063 Score=40.64 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=33.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 8870687414889999999996302232364116753
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMD 181 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs 181 (266)
.|..|.-|+|||+++.|+|...++.|+.|+++-....
T Consensus 3 ~v~sgKgGvGkt~~~~nLa~~la~~G~~vll~D~D~g 39 (139)
T cd02038 3 AVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLG 39 (139)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9964999983999999999999978996999989899
No 88
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.016 Score=37.83 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=72.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCC---CCHHHHHHHHHHHHHCCCCCC-CCHHH
Q ss_conf 77777655301683688706874148899999999963022323641167---534899999999630223234-78555
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE---MDREKLGARALSNLLYPSSSR-IPYLN 205 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlE---Ms~~ql~~R~ls~~t~~~~s~-I~~~~ 205 (266)
+.|+++---+.+|+.+.|-|+.|.|||++.--++--..-..-.|.+-..+ ++..++..+ + +.+++.. +-...
T Consensus 16 ~iL~~isl~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~-i---~~v~Q~~~lf~~t 91 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN-I---AYVPQDPFLFSGT 91 (171)
T ss_pred CCEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHH-E---EEECCCCCCCCCC
T ss_conf 61677189985998999999999839999999976775897489999999885998998631-8---9996668437577
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHH
Q ss_conf 0178899899999999999997299547479988989999
Q gi|254781149|r 206 LIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFV 245 (266)
Q Consensus 206 l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ir 245 (266)
++..-|+..|+.++.=|-.-+.+.+++|-|.|.-.++...
T Consensus 92 v~eNiLSgGq~Qri~lARal~~~p~illlDEpts~LD~~~ 131 (171)
T cd03228 92 IRENILSGGQRQRIAIARALLRDPPILILDEATSALDPET 131 (171)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 9997744889999999999974899899957766799899
No 89
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=96.28 E-value=0.0054 Score=41.08 Aligned_cols=58 Identities=24% Similarity=0.231 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEE--CCCCCH
Q ss_conf 85111377777655301683688706874148899999999963022323641--167534
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFF--SLEMDR 182 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~f--SlEMs~ 182 (266)
-+.||++.+|-++- +.+|+=+-|=|.+|+|||+++..++.|+++.+..|.+| --|-+.
T Consensus 138 ~leTGIkaID~l~p-igkGQRigIfggaGvGKTvLl~eli~niak~~~~v~V~a~IGER~R 197 (480)
T CHL00060 138 IFETGIKVVDLLAP-YRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTR 197 (480)
T ss_pred CHHCCHHHHHCCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCH
T ss_conf 11027044431254-0036688765689988789999999612003798899999667736
No 90
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.27 E-value=0.074 Score=33.18 Aligned_cols=120 Identities=21% Similarity=0.216 Sum_probs=74.2
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH---HHHHHHHHHCCCCC-CCCHHHCC
Q ss_conf 777655301683688706874148899999999963022323641167534899---99999963022323-47855501
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKL---GARALSNLLYPSSS-RIPYLNLI 207 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql---~~R~ls~~t~~~~s-~I~~~~l~ 207 (266)
+|.+-.|+.. -|++|.|.-|-|||+++.+++. -+..|-.|...|+.-+..+- ..++++.+..+--. .=...++.
T Consensus 28 ~~~L~~~~~~-RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~ 105 (894)
T COG2909 28 LDRLRRANDY-RLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLL 105 (894)
T ss_pred HHHHHHCCCC-EEEEEECCCCCCHHHHHHHHHH-HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9998607784-3899867887758899999998-6476554357645776678899999999999874723247899998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC--CCE--EECCCCCCHHHHHHHHHHHHH
Q ss_conf 7889989999999999999729--954--747998898999999999999
Q gi|254781149|r 208 RGEINQEQYRISQGICEKLQDF--PLI--IDDRPSPGIMEFVHVANGLRN 253 (266)
Q Consensus 208 ~g~l~~~e~~~i~~a~~~l~~~--pl~--IdD~~~~ti~~ira~aR~~k~ 253 (266)
.......=-.-+..-.++|.++ ||| +||=+-++=..|-+-.|++-+
T Consensus 106 q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~ 155 (894)
T COG2909 106 QKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLK 155 (894)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 73355659999999999987514964999535322576028999999997
No 91
>PRK11519 tyrosine kinase; Provisional
Probab=96.25 E-value=0.011 Score=38.82 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=42.2
Q ss_pred CCC-EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf 683-6887068741488999999999630223236411675348999999
Q gi|254781149|r 141 LRE-LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARA 189 (266)
Q Consensus 141 ~g~-LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ 189 (266)
++. +.|-.+.||.|||+++.|+|...|..|+.|++.-..|-+-.+...+
T Consensus 525 ~~~vi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~ 574 (720)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELL 574 (720)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHC
T ss_conf 87679997089999789999999999983799199993877770167753
No 92
>TIGR02012 tigrfam_recA protein RecA; InterPro: IPR001553 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response . In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs . RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage . RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved , , among eubacterial species. It is also found in the chloroplast of plants . RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, ß-strand 3, the loop C-terminal to ß-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and ß-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation [Lusetti and Cox, Annu. Rev. Biochem. 2002. 71:71-100.]. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between ß-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at ß-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at ß-strand 2 and the loop C-terminal to that strand, all of which are greater than 90
Probab=96.25 E-value=0.011 Score=38.84 Aligned_cols=129 Identities=22% Similarity=0.203 Sum_probs=87.2
Q ss_pred CCCCCCCHHHHHHHHH--HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 6678511137777765--53016836887068741488999999999630223236411675348999999996302232
Q gi|254781149|r 121 ENPDIKWGLQSVDHLM--GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSS 198 (266)
Q Consensus 121 ~~~Gi~TG~~~LD~~~--gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~ 198 (266)
.+.-||||--.||-.+ ||+=+|-.+=|=|.-|.|||++|+++.-++-+.|..+.|..-|---+..+.+-|.
T Consensus 32 ~v~~i~tGsl~LD~AlG~GG~P~GRi~EiYGpESsGKTTLal~~iA~~Qk~Gg~~afiDAEHAlD~~YA~~LG------- 104 (322)
T TIGR02012 32 DVEVISTGSLALDLALGVGGLPKGRIIEIYGPESSGKTTLALHVIAEAQKAGGVAAFIDAEHALDPVYAKKLG------- 104 (322)
T ss_pred CEEEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHCCHHHHHHHC-------
T ss_conf 1002125301343551679898750799854898847899999999997439838998451303778899836-------
Q ss_pred CCCCHHHCCCCCCCHHHHHHHHHHHHHHHHC---CC-EEECCCCCCH----------HHHHHHHHHHHHHHHHHHH
Q ss_conf 3478555017889989999999999999729---95-4747998898----------9999999999999479998
Q gi|254781149|r 199 SRIPYLNLIRGEINQEQYRISQGICEKLQDF---PL-IIDDRPSPGI----------MEFVHVANGLRNKHTKMVQ 260 (266)
Q Consensus 199 s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~---pl-~IdD~~~~ti----------~~ira~aR~~k~k~~~~~~ 260 (266)
|+..+|.-..-+.. +..-+.++.|-++ .+ -||.-+.++. .++=-+||-|.+--+++..
T Consensus 105 --v~~~~L~~sQPd~G--E~ALeI~~~L~rSgAvD~iVvDSVAAL~P~aEieGemgd~~~Gl~ARLMS~ALRKl~g 176 (322)
T TIGR02012 105 --VDIDNLLVSQPDTG--EQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTG 176 (322)
T ss_pred --CCHHHHEEECCCCC--HHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf --45247112088871--4699999998723761179973400138712317543544232578889999998887
No 93
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.25 E-value=0.041 Score=34.93 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=33.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 6836887068741488999999999630223236411675
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEM 180 (266)
+..-+++-|.||.|||++|-.+|......+.+++.++...
T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~ 57 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHH
T ss_conf 9980899899998865999999997121379827854777
No 94
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.046 Score=34.61 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CC--------------CE-EEEC-------
Q ss_conf 11377777655301683688706874148899999999963-02------23--------------23-6411-------
Q gi|254781149|r 127 WGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GH--------------GV-AFFS------- 177 (266)
Q Consensus 127 TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~--------------~V-l~fS------- 177 (266)
...+.||++.--+++|+++.|-|+.|.|||++.-.++--.- .+ |. .| .+|.
T Consensus 18 ~~~~aL~~isl~i~~GE~v~iiG~nGsGKSTLl~~l~GLl~p~~G~V~i~G~~i~~~~~~~~~~r~~iG~VfQ~P~~~l~ 97 (287)
T PRK13637 18 FEKKALDNVNIEIEDGEFVALIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF 97 (287)
T ss_pred CCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCHHHHHHCEEEEEECCCCCCC
T ss_conf 73817532076987998999999999399999999973998887269999999878886778887417899617520237
Q ss_pred --------------CCCCHHHHHHHHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf --------------675348999999996302232347855501---788998999999999999972995474799889
Q gi|254781149|r 178 --------------LEMDREKLGARALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPG 240 (266)
Q Consensus 178 --------------lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~t 240 (266)
+-++.+++..|.-..+- .-+++...++ -..|+-.+.+++.-|..-+.+-++.|-|.|.-.
T Consensus 98 ~~tV~e~i~fg~~~~g~~~~e~~~rv~~~l~---~vgL~~~~~~~~~p~~LSGGqkQRvaiA~aL~~~P~iLllDEPTs~ 174 (287)
T PRK13637 98 EETIEKDIAFGPINLGLSEEEIENRVKEAMN---IVGLDYEVYKDKSPFELSGGQKRRVAIAGVVAMEPKVLILDEPTAG 174 (287)
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HCCCCHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 0309999986898869999999999999997---6699848870689112998899999999999839999998388664
Q ss_pred HH-----HHHHHHHHHHHHH
Q ss_conf 89-----9999999999994
Q gi|254781149|r 241 IM-----EFVHVANGLRNKH 255 (266)
Q Consensus 241 i~-----~ira~aR~~k~k~ 255 (266)
++ +|....+++++++
T Consensus 175 LDp~~~~~i~~~l~~L~~e~ 194 (287)
T PRK13637 175 LDPKGRDDILEKIKALHKEY 194 (287)
T ss_pred CCHHHHHHHHHHHHHHHHHC
T ss_conf 89999999999999999850
No 95
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=96.22 E-value=0.0067 Score=40.42 Aligned_cols=196 Identities=15% Similarity=0.179 Sum_probs=108.7
Q ss_pred HHHHHHCC--CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89863005--7785689999984067636899999999999999999999999999985114442345458999999999
Q gi|254781149|r 6 ISHFESQT--KISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPTCNTATLIRKSMQSFEDI 83 (266)
Q Consensus 6 ~~~le~~~--~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~ 83 (266)
+.|-.+-+ ++++.+-|..|....-| ++.|+.+ .+--.|-.++.+....+....+....... -..-.+..++.
T Consensus 98 ~~h~~s~~~~~~~~gD~Lvalf~E~~S---~a~Y~Lk--~qgi~Rl~~~~~ish~i~~~~~~~~~~~~-~~~~~~e~~~~ 171 (774)
T TIGR02639 98 LLHVKSAGKKEIDIGDLLVALFDEEDS---HASYFLK--SQGITRLDILNYISHGISKDDKKDQLGEE-AAEEEEELQEE 171 (774)
T ss_pred HHHHHHCCCCCCCCCHHHHEECCCCCC---HHHHHHH--HCCCCHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCHHHHCC
T ss_conf 998531488602311100111027861---3102033--21786999999741455457875633122-23420143146
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCHHHHHHHHHHHHCCCCEE--EEECCCCHHHHHH
Q ss_conf 9654431046655430116899999999999863036---6678511137777765530168368--8706874148899
Q gi|254781149|r 84 ISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKKEG---ENPDIKWGLQSVDHLMGGVQLRELI--LIGARPSMGKTTF 158 (266)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Gi~TG~~~LD~~~gG~~~g~Li--viaaRP~mGKTa~ 158 (266)
-.+.+...+ .+....-.+.+...........++| ++.|= =..|++.+.=+++..=. ++-|-|||||||.
T Consensus 172 ~~~~~~~~~---~~~~~~~~~aL~~yt~~Lt~~A~~GkiDPLIGR---E~EleRtiQvLCRR~KNNPl~VGEPGVGKTAI 245 (774)
T TIGR02639 172 KEDSAREED---TDKAKKQQDALEKYTVDLTEKAKNGKIDPLIGR---EDELERTIQVLCRRKKNNPLLVGEPGVGKTAI 245 (774)
T ss_pred CCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC---HHHHHHHHHHHCCCCCCCCCEECCCCCCHHHH
T ss_conf 777876656---652004656998841548999860887873456---68874233320345678872044888644899
Q ss_pred HHHHHHHHHHC-CCC-----EEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCC--
Q ss_conf 99999996302-232-----3641167534899999999630223234785550178899899999999999997299--
Q gi|254781149|r 159 ALSTALHMAMS-GHG-----VAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFP-- 230 (266)
Q Consensus 159 alnia~~~a~~-g~~-----Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~p-- 230 (266)
+=.+|..++.. ..| --+|||.|+. |||. = + .||++. +|+...+.+|++.|
T Consensus 246 ~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~------LLAG--------T---K-YRGDFE----~RLK~V~~Ei~~~~~a 303 (774)
T TIGR02639 246 VEGLAQRIAEGQKVPEVLKNAKIYSLDMGT------LLAG--------T---K-YRGDFE----ERLKAVVSEIEKEPNA 303 (774)
T ss_pred HHHHHHHHHCCCCCCHHHCCCCEEEECHHH------HHHH--------C---C-CCCHHH----HHHHHHHHHHHCCCCC
T ss_conf 999999864156467002478345404345------6410--------2---4-542478----9999999998528999
Q ss_pred --CEEEC
Q ss_conf --54747
Q gi|254781149|r 231 --LIIDD 235 (266)
Q Consensus 231 --l~IdD 235 (266)
||||.
T Consensus 304 nILFIDE 310 (774)
T TIGR02639 304 NILFIDE 310 (774)
T ss_pred CEEEEEC
T ss_conf 5466411
No 96
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.21 E-value=0.017 Score=37.65 Aligned_cols=112 Identities=16% Similarity=0.114 Sum_probs=71.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC-CCHHHCCC
Q ss_conf 77777655301683688706874148899999999963022323641167534899999999630223234-78555017
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSR-IPYLNLIR 208 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~-I~~~~l~~ 208 (266)
+.|+++---+.+|+++.|-|+.|.|||++.--++--..-..-.|.+-.-.+.... ..+-..++.+++.. +-...++.
T Consensus 16 ~~L~~i~l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G~i~i~g~~i~~~~--~~~~~~i~~v~Q~~~lf~~ti~~ 93 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE--KALSSLISVLNQRPYLFDTTLRN 93 (178)
T ss_pred CCEECEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCEEHHHHH--HHHHHHEEEECCCCCCCCCHHHH
T ss_conf 6332558998699999999999875999999998617667886999999889978--99997208983556364541998
Q ss_pred --C-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf --8-8998999999999999972995474799889899
Q gi|254781149|r 209 --G-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 209 --g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
| .|+..+++++.-|..-+.+.|++|-|.|.-.++.
T Consensus 94 nlg~~LSgGqkqRv~iAral~~~p~ililDEpts~LD~ 131 (178)
T cd03247 94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDP 131 (178)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCH
T ss_conf 62888899999999999999649797672286556998
No 97
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=96.20 E-value=0.0075 Score=40.08 Aligned_cols=32 Identities=19% Similarity=-0.030 Sum_probs=16.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCC
Q ss_conf 36411675348999999996302232347855501
Q gi|254781149|r 173 VAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLI 207 (266)
Q Consensus 173 Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~ 207 (266)
+++..-|--.-.=+.|++..+. ..+|+...+-
T Consensus 210 ~lV~~pe~~~i~Et~R~~~~L~---~~~i~v~~vv 241 (304)
T pfam02374 210 RLVCIPEKMSLYETERAIQELA---KYGIDVDAVI 241 (304)
T ss_pred EEEECCCCCHHHHHHHHHHHHH---HCCCCCCEEE
T ss_conf 9983798437999999999999---7799889798
No 98
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.037 Score=35.23 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=68.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCH---HHHHHHHHHHHHCCCCCCCCHHHCC
Q ss_conf 7777655301683688706874148899999999963022323641167534---8999999996302232347855501
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDR---EKLGARALSNLLYPSSSRIPYLNLI 207 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~---~ql~~R~ls~~t~~~~s~I~~~~l~ 207 (266)
.|+..---+.+|+++.|-|..|.|||++.--++--.-...-.|.|..-+.+. .++..+ ++ -+
T Consensus 14 ~l~~i~~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~~~-i~--------~v------ 78 (157)
T cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRR-IG--------YV------ 78 (157)
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC-CC--------CC------
T ss_conf 7821178987997999987889998999999958847996289999999997999999940-60--------87------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf 7889989999999999999729954747998898999
Q gi|254781149|r 208 RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 208 ~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
..|+..+..++.-|..-+.+.++.|-|.|.-.++-.
T Consensus 79 -~QLSgGqkqrv~iA~al~~~p~ililDEPtsgLD~~ 114 (157)
T cd00267 79 -PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114 (157)
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf -668869999999999997099999996987668999
No 99
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.012 Score=38.69 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=39.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 6836887068741488999999999630223236411675348999999996
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSN 192 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~ 192 (266)
.++=+++-|.||+|||-+|.-|+..+++.|.+|+|++. .+++.++-..
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~----~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA----PDLLSKLKAA 151 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH----HHHHHHHHHH
T ss_conf 58828998999987999999999999983984999885----9999999998
No 100
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.19 E-value=0.0034 Score=42.50 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 851113777776553016836887068741488999999999630223236411
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFS 177 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fS 177 (266)
-+.||++.+|-++- +.+|+=+.|=|.||+|||+++.+++.|+++++..|.+|-
T Consensus 52 ~l~TGIr~ID~l~p-igkGQR~~I~~~~g~GKt~ll~~ii~~~~~~~~~v~V~~ 104 (274)
T cd01133 52 ILETGIKVIDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFA 104 (274)
T ss_pred CCCCCCEEEECCCC-CCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 31158666644466-147857787579999823689999999985089879999
No 101
>KOG2680 consensus
Probab=96.18 E-value=0.0022 Score=43.88 Aligned_cols=54 Identities=28% Similarity=0.429 Sum_probs=39.5
Q ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHHHH
Q ss_conf 5301683688706874148899999999963022-----32364116753489999999
Q gi|254781149|r 137 GGVQLRELILIGARPSMGKTTFALSTALHMAMSG-----HGVAFFSLEMDREKLGARAL 190 (266)
Q Consensus 137 gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g-----~~Vl~fSlEMs~~ql~~R~l 190 (266)
.|--.|-.+.|+|.||.||||+|+.++......- ...-+||||||+.+-....+
T Consensus 61 egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEAltQAf 119 (454)
T KOG2680 61 EGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEALTQAF 119 (454)
T ss_pred CCCCCCEEEEEECCCCCCCEEEEEEHHHHHCCCCCEEEEECCEEEEECCCHHHHHHHHH
T ss_conf 28632138997248988844100002454078875036502222210001779999998
No 102
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.16 E-value=0.0045 Score=41.65 Aligned_cols=109 Identities=12% Similarity=0.065 Sum_probs=71.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC---HHHHHHHHHHHHHCCCCC-CCCHHHC
Q ss_conf 777765530168368870687414889999999996302232364116753---489999999963022323-4785550
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMD---REKLGARALSNLLYPSSS-RIPYLNL 206 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs---~~ql~~R~ls~~t~~~~s-~I~~~~l 206 (266)
.|+++.--+.||+++.|-|+.|.|||+++--++--..-..-.|.+...++. .+++. +.+ +.+++. .+-...+
T Consensus 17 vL~~i~l~i~~G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~-~~i---~~v~Q~~~lf~~ti 92 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELG-DHV---GYLPQDDELFSGSI 92 (173)
T ss_pred CEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH-CCE---EEEECCCEECCCCH
T ss_conf 45476999859999999999998099999999666667999899999993328998984-208---99908883677758
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 1788998999999999999972995474799889899
Q gi|254781149|r 207 IRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 207 ~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
+..-|+..|+.++.=|-.-+.+.+++|-|.|.-.++.
T Consensus 93 ~eNiLSGGQkQRvalARal~~~p~ililDEpts~LD~ 129 (173)
T cd03246 93 AENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDV 129 (173)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 9976769999999999998279999999687668998
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.04 E-value=0.15 Score=30.93 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 99899999999999997299547479988989999999999999
Q gi|254781149|r 211 INQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFVHVANGLRNK 254 (266)
Q Consensus 211 l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k~k 254 (266)
|++-|++-+.-...-++| =.|=+.=++|++.++...|.+-+|
T Consensus 839 LT~RE~eVL~lLa~GlSN--keIA~~L~IS~~TVK~HlrnIy~K 880 (903)
T PRK04841 839 LTQREWQVLGLIYSGYSN--EQIAGELDVAATTIKTHIRNLYQK 880 (903)
T ss_pred CCHHHHHHHHHHHCCCCH--HHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 799999999999768999--999988199876999999999856
No 104
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.02 E-value=0.06 Score=33.79 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=61.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHH-CCC-CEEEECCCCCHHHHH--HHHHHHHHCCCCCCCCHHHCCCCCCCHHHH
Q ss_conf 6836887068741488999999999630-223-236411675348999--999996302232347855501788998999
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAM-SGH-GVAFFSLEMDREKLG--ARALSNLLYPSSSRIPYLNLIRGEINQEQY 216 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~-~g~-~Vl~fSlEMs~~ql~--~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~ 216 (266)
.|-.+.+-|.+|+|||+..--+|.+... .|+ .|.++++.=-+--=. -|.-+.+ -+||..-.. +.+
T Consensus 175 ~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~I-----lgvPv~vv~----~~~-- 243 (404)
T PRK06995 175 RGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKI-----LGVPVHAVK----DAA-- 243 (404)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH-----CCCEEEEEC----CHH--
T ss_conf 475589866888763758999999999983898379997687547899999999987-----595599959----999--
Q ss_pred HHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf 9999999999729954747998898999
Q gi|254781149|r 217 RISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 217 ~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
-+..++.++++..+-+-||++.+-.+-
T Consensus 244 -eL~~aL~~l~~~dlILIDTaGrs~rD~ 270 (404)
T PRK06995 244 -DLRLALAELRNKHIVLIDTVGMSQRDR 270 (404)
T ss_pred -HHHHHHHHHCCCCEEEEECCCCCCCCH
T ss_conf -999999970899999980999897688
No 105
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.97 E-value=0.0094 Score=39.42 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=65.3
Q ss_pred HHHC-CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC---------CCC---H
Q ss_conf 5301-68368870687414889999999996302232364116753489999999963022323---------478---5
Q gi|254781149|r 137 GGVQ-LRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSS---------RIP---Y 203 (266)
Q Consensus 137 gG~~-~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s---------~I~---~ 203 (266)
..|. +.+=+++-|.||.|||-+|..||..+..+|++|+|+| ..+++.++-+....-... ..+ .
T Consensus 177 ~~F~~~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~t----a~~L~~~l~~~~~~~~~~~~~~~~~l~~~DLLII 252 (330)
T PRK06835 177 KNFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRT----SDELIENLREIRFNNDNDAPELEDLLINCDLLII 252 (330)
T ss_pred HHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE----HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEE
T ss_conf 724788886698899999889999999999998799499962----9999999999754576448999999961898997
Q ss_pred HHCCCCCCCHHHHHHHHHHHH-HH-HHCCCEEECCCCCCHHHHHHH
Q ss_conf 550178899899999999999-99-729954747998898999999
Q gi|254781149|r 204 LNLIRGEINQEQYRISQGICE-KL-QDFPLIIDDRPSPGIMEFVHV 247 (266)
Q Consensus 204 ~~l~~g~l~~~e~~~i~~a~~-~l-~~~pl~IdD~~~~ti~~ira~ 247 (266)
.++=....++.....+-..++ ++ .+.|..| +.++++.++...
T Consensus 253 DDLG~E~~t~~~~~~Lf~iIN~R~~~~k~tII--TTNl~~~eL~~~ 296 (330)
T PRK06835 253 DDLGTESITEFSKTELFNLINKRLLMNKKMII--STNLSLEELLKT 296 (330)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE--ECCCCHHHHHHH
T ss_conf 21034558868999999999999867999799--889998999998
No 106
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.06 Score=33.80 Aligned_cols=114 Identities=21% Similarity=0.222 Sum_probs=56.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC------EEEECCCCCHHHHHHHHHHHHHCCCCCCCCH-HHCC----CC
Q ss_conf 68368870687414889999999996302232------3641167534899999999630223234785-5501----78
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMSGHG------VAFFSLEMDREKLGARALSNLLYPSSSRIPY-LNLI----RG 209 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~g~~------Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~-~~l~----~g 209 (266)
=.+-|++.|.+|+||+++|..+|....-.+.+ ..--+++++.+.-..|.++..+.-+.-.|.- .+-+ ..
T Consensus 38 l~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i~~~~hpdl~~i~r~~d~k~~~~~~ 117 (363)
T PRK07471 38 LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRT 117 (363)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 76458767999818899999999998579997777767870531258777289999526999846676200113332124
Q ss_pred CCCHHHHHHH-----------------------------HHHHHHHHHCC-----CEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 8998999999-----------------------------99999997299-----547479988989999999999999
Q gi|254781149|r 210 EINQEQYRIS-----------------------------QGICEKLQDFP-----LIIDDRPSPGIMEFVHVANGLRNK 254 (266)
Q Consensus 210 ~l~~~e~~~i-----------------------------~~a~~~l~~~p-----l~IdD~~~~ti~~ira~aR~~k~k 254 (266)
.+.-++.+.+ +.-.+.|.+-| |.|...|+-=+..|+|+|+++.-+
T Consensus 118 ~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEPP~~t~fiLit~~~~~llpTI~SRCq~~~~~ 196 (363)
T PRK07471 118 VITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLLLLVSHAPARLLPTIRSRCRKLRLR 196 (363)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCHHHHHHHCCCCCCC
T ss_conf 4539999999999724852489669998687873889999999972158988389986399777779999735242589
No 107
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.94 E-value=0.0084 Score=39.76 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 85111377777655301683688706874148899999999963022323641
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFF 176 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~f 176 (266)
-+.||++.+|-++- +.+|+=+-|=|.+|+|||+++..++.|++.....+.+|
T Consensus 124 ~l~TGIkaID~l~p-igrGqrigIfggaGvGKTvL~~~ii~n~~~~~~~v~V~ 175 (459)
T PRK12597 124 LLETGIKVIDLLCP-IAKGGKTGLFGGAGVGKTVLMMELIFNISKRHQGSSVF 175 (459)
T ss_pred CCCCCHHHHHCCCC-CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 20038055541266-35787777436899982157899999877551783688
No 108
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=95.91 E-value=0.059 Score=33.85 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=61.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCC---CHHHHHHHH
Q ss_conf 68870687414889999999996302232364116753489999999963022323478555017889---989999999
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEI---NQEQYRISQ 220 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l---~~~e~~~i~ 220 (266)
.+||.|.+|.|||+|..++..+ ...|..++++--|.....+-..+++. ..++...+..|-+ -..+.....
T Consensus 2 v~iitGFLGsGKTTll~~ll~~-~~~~~~~avI~Ne~g~~~iD~~ll~~------~~~~v~el~~GciCc~~~~d~~~~l 74 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRD-NREGLKIAVIVNDFGETGIDAELLRE------TGAEIVELNNGCICCTIREDLSMVL 74 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHH------CCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 6999348878899999999984-44898479999336530207999870------6961899748866454333699999
Q ss_pred HHHHHHHHC-C--CEEECCCCCCHHHHH
Q ss_conf 999999729-9--547479988989999
Q gi|254781149|r 221 GICEKLQDF-P--LIIDDRPSPGIMEFV 245 (266)
Q Consensus 221 ~a~~~l~~~-p--l~IdD~~~~ti~~ir 245 (266)
.+..++... | ++|+-++-....++.
T Consensus 75 ~~l~~~~~~~~d~iiIE~sGla~p~~i~ 102 (174)
T pfam02492 75 EALLELKLPRLDLLFIETTGLACPAPVL 102 (174)
T ss_pred HHHHHCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 9998557899999999587667707777
No 109
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.88 E-value=0.0097 Score=39.32 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 851113777776553016836887068741488999999999630223236411
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFS 177 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fS 177 (266)
-+.||++.+|-++- +.+|+=+-|=|.+|+|||++...++.|++++...|.+|-
T Consensus 128 ~l~TGIkaID~l~p-igkGqrigIfggaGvGKTvLl~eli~n~a~~~~~v~V~a 180 (466)
T PRK09280 128 ILETGIKVIDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNIAKEHGGYSVFA 180 (466)
T ss_pred CCCCCCHHHHCCCC-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 30018132223167-137747985579999800899999999998659909999
No 110
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.019 Score=37.30 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC
Q ss_conf 37777765530168368870687414889999999996302232364116753489999999963022323478555017
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIR 208 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~ 208 (266)
.+.||++.--+.+|+.+-+.|+-|.|||++.--++--..-..-.|.++..+.....-..| ..++.+.+..--+..+.-
T Consensus 13 ~~~L~~vsl~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~--~~ig~v~q~~~l~~~ltv 90 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVK--RRIGYLPEEPSLYENLTV 90 (173)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHH--CCEEEEECCCCCCCCCCH
T ss_conf 999822087887993999987899799999999976857787889999999886848886--578999568766712677
Q ss_pred C---CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH-----HHHHHHHHHHH
Q ss_conf 8---89989999999999999729954747998898-----99999999999
Q gi|254781149|r 209 G---EINQEQYRISQGICEKLQDFPLIIDDRPSPGI-----MEFVHVANGLR 252 (266)
Q Consensus 209 g---~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti-----~~ira~aR~~k 252 (266)
. +++..+.+++.=|..-+.+.++.|-|.|.-.+ .++....++++
T Consensus 91 ~e~l~LSgG~kqrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~i~~l~ 142 (173)
T cd03230 91 RENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142 (173)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8986339899999999999964999999908865799999999999999999
No 111
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.85 E-value=0.046 Score=34.59 Aligned_cols=121 Identities=13% Similarity=0.086 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH----------HCC------------CCE--E-------E--
Q ss_conf 377777655301683688706874148899999999963----------022------------323--6-------4--
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA----------MSG------------HGV--A-------F-- 175 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a----------~~g------------~~V--l-------~-- 175 (266)
-+.|+++.--+.+|+.+.|-|..|.|||+++..++--.. ..| +.| + |
T Consensus 21 ~~aL~~vsl~I~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~~~~G~i~~~g~~i~~~~~~~lr~~vg~VfQ~P~~q~~~ 100 (283)
T PRK13640 21 KPALKDVSFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPKSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 100 (283)
T ss_pred CCEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCHHHHHHCEEEEEECCCCCCCC
T ss_conf 71787718699899999999999987999999996403788886179999999999679889962618998688761887
Q ss_pred --------EC---CCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC---CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH
Q ss_conf --------11---6753489999999963022323478555017---889989999999999999729954747998898
Q gi|254781149|r 176 --------FS---LEMDREKLGARALSNLLYPSSSRIPYLNLIR---GEINQEQYRISQGICEKLQDFPLIIDDRPSPGI 241 (266)
Q Consensus 176 --------fS---lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~---g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti 241 (266)
|. .-++.+++..|.-..+..+ ....++. ..|+-.+++++.-|..-+.+-++.|-|.|.-.+
T Consensus 101 ~tV~e~iafgl~n~~~~~~e~~~~v~~~l~~v-----gl~~~~~~~p~~LSGGqkQRvaiA~aLa~~P~iLllDEPTs~L 175 (283)
T PRK13640 101 ATVGDDVAFGLENRGVPRPEMIKIVADVLSDV-----GMLDYIDSEPANLSGGQKQRVAIAGILAVEPQIIILDESTSML 175 (283)
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 82999998457537999999999999999877-----9977764792229999999999999997199999976874548
Q ss_pred H-----HHHHHHHHHHHH
Q ss_conf 9-----999999999999
Q gi|254781149|r 242 M-----EFVHVANGLRNK 254 (266)
Q Consensus 242 ~-----~ira~aR~~k~k 254 (266)
+ +|....+++.++
T Consensus 176 D~~~~~~i~~~l~~l~~e 193 (283)
T PRK13640 176 DPAGKEQILKLIRKLMKD 193 (283)
T ss_pred CHHHHHHHHHHHHHHHHC
T ss_conf 989999999999999970
No 112
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=95.84 E-value=0.0059 Score=40.83 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 116899999999999863036667851113777776553016836887068741488999999999630
Q gi|254781149|r 100 ISIANAATTAMKSAEQQKKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM 168 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~ 168 (266)
.++.+.......+..+....... .+-+.=|=.+=|=.+||||+||=||||.|+|+|...+|-+.--
T Consensus 49 ~T~~N~~~~~~~~~~r~~~~~~~---~~~~~ILk~~~gl~~PGEl~vVLGrPGaGCsTlLk~ia~~t~g 114 (1466)
T TIGR00956 49 STLPNILLKILTEGFRKLKKEKD---TKTFDILKPMDGLIKPGELTVVLGRPGAGCSTLLKTIASKTDG 114 (1466)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCC---CCEEEECCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHEEE
T ss_conf 43656899999999987530135---5504330470100267617997248997356655565320001
No 113
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.81 E-value=0.028 Score=36.13 Aligned_cols=113 Identities=14% Similarity=0.114 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCC
Q ss_conf 13777776553016836887068741488999999999630223236411675348999999996302232347855501
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLI 207 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~ 207 (266)
+.+.||++---+++|+.+-+.|.-|.|||++.--++--..-..-.|.|.--+.+......+.- .+|..
T Consensus 12 ~~~aL~~vsl~i~~Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G~i~i~G~~i~~~~~~~~~~--------~gi~~---- 79 (163)
T cd03216 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARR--------AGIAM---- 79 (163)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH--------CCCCE----
T ss_conf 999885548898799899999889989999999995776898578999999999999999998--------79948----
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH-----HHHHHHHHHHH
Q ss_conf 7889989999999999999729954747998898-----99999999999
Q gi|254781149|r 208 RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI-----MEFVHVANGLR 252 (266)
Q Consensus 208 ~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti-----~~ira~aR~~k 252 (266)
-.+|+-.+.+++.-|..-+.+-++.|-|.|.-.+ .+|....|+++
T Consensus 80 v~qLSgG~~Qrv~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~l~ 129 (163)
T cd03216 80 VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR 129 (163)
T ss_pred ECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 94699899999999999972999999909755799999999999999998
No 114
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.012 Score=38.73 Aligned_cols=92 Identities=25% Similarity=0.329 Sum_probs=54.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCE-EEECCCCCHHH--HHHHHHHHHHCC--CCCCCCHHHCCCCC--CCHHHHH
Q ss_conf 88706874148899999999963022323-64116753489--999999963022--32347855501788--9989999
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGV-AFFSLEMDREK--LGARALSNLLYP--SSSRIPYLNLIRGE--INQEQYR 217 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~V-l~fSlEMs~~q--l~~R~ls~~t~~--~~s~I~~~~l~~g~--l~~~e~~ 217 (266)
+.|-|+||+|||++++-++......|..| .|+.-|+...- +..+++...|+- -.+.+....-+-|+ .+-+..+
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le 87 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLE 87 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEHHHHH
T ss_conf 99867998458999999999998559665139831142088275159998147955798884788762104786278889
Q ss_pred -HHHHHHHHHHH-CCCEEECC
Q ss_conf -99999999972-99547479
Q gi|254781149|r 218 -ISQGICEKLQD-FPLIIDDR 236 (266)
Q Consensus 218 -~i~~a~~~l~~-~pl~IdD~ 236 (266)
....++.+... ..+.|-|.
T Consensus 88 ~i~~~al~rA~~~aDvIIIDE 108 (179)
T COG1618 88 EIAIPALRRALEEADVIIIDE 108 (179)
T ss_pred HHHHHHHHHHHHCCCEEEEEC
T ss_conf 986899998863499899943
No 115
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.77 E-value=0.089 Score=32.60 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=76.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC------------CE---------EEEC----
Q ss_conf 777776553016836887068741488999999999630-------223------------23---------6411----
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH------------GV---------AFFS---- 177 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~------------~V---------l~fS---- 177 (266)
+.|+++.--+.+|+.+.|-|+.|.|||+++--++--.-- .|. .| .||+
T Consensus 21 ~aL~~isl~i~~GE~vaivG~nGsGKSTL~k~l~Gl~~p~~G~I~i~G~~i~~~~~~~lr~~ig~VfQ~P~~~l~~~tV~ 100 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRKQIGMVFQNPDNQFVGTTVQ 100 (279)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEEECCHHHHCCCCHHH
T ss_conf 25763076887998999999999659999999972888889649999999985787999743668821856525762689
Q ss_pred ---------CCCCHHHHHHHHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH---
Q ss_conf ---------675348999999996302232347855501---78899899999999999997299547479988989---
Q gi|254781149|r 178 ---------LEMDREKLGARALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM--- 242 (266)
Q Consensus 178 ---------lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~--- 242 (266)
.-++.+++..|+-..+..+ ....+. -..|+-.++.++.-|..-+.+-++.|-|.|.-.++
T Consensus 101 e~iafgl~~~g~~~~e~~~rv~~~l~~~-----gl~~~~~~~p~~LSGGQrQRvaIAraL~~~P~iLilDEPTs~LD~~~ 175 (279)
T PRK13635 101 DDVAFGLENIGVPREEMVERVDQALRQV-----GMEDFLNREPHRLSGGQKQRVAIAGVLALQPDILILDEATSMLDPQG 175 (279)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHC-----CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHH
T ss_conf 9998899877999999999999999877-----99788617934399999999999999970999899738745489899
Q ss_pred --HHHHHHHHHHHH
Q ss_conf --999999999999
Q gi|254781149|r 243 --EFVHVANGLRNK 254 (266)
Q Consensus 243 --~ira~aR~~k~k 254 (266)
+|....++++++
T Consensus 176 ~~~i~~~l~~L~~~ 189 (279)
T PRK13635 176 RREVLETVRQLKEQ 189 (279)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999983
No 116
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.74 E-value=0.017 Score=37.67 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=21.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 88706874148899999999963022323641167
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlE 179 (266)
|.|.|.=|+|||+++.|+|...|+.|+.|+++-+.
T Consensus 4 Iai~GKGGVGKTTtavNLA~aLa~~GkkVlliDaD 38 (270)
T cd02040 4 IAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 99979985778999999999999879949998657
No 117
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.74 E-value=0.02 Score=37.19 Aligned_cols=122 Identities=14% Similarity=0.086 Sum_probs=74.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCC----------C
Q ss_conf 777776553016836887068741488999999999630223236411675348999999996302232----------3
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSS----------S 199 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~----------s 199 (266)
..||++.--+++|+++.|-|+-|.|||++.--++-..--..-.|.|.--+........|.-..++.+++ -
T Consensus 14 ~aL~~vsl~v~~GEi~~liG~nGaGKSTll~~l~G~~~p~~G~I~~~G~~~~~~~~~~~~~~~i~~vp~~r~~~~l~~~~ 93 (182)
T cd03215 14 GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred CCEECEEEEECCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHCCEEEEEHHHHHCCCCCCC
T ss_conf 87623178985996999988899992637787669867887759999999886499999978969960207662567899
Q ss_pred CCCHHHCC-CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHHH
Q ss_conf 47855501-78899899999999999997299547479988989-----9999999999
Q gi|254781149|r 200 RIPYLNLI-RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGLR 252 (266)
Q Consensus 200 ~I~~~~l~-~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~k 252 (266)
.+. .++. ...|+-.+.+++.=|..-+.+.++.|-|.|.-.++ ++....++++
T Consensus 94 ~v~-en~~~~~~LSGG~~Qrv~lAral~~~p~llllDEPT~gLD~~~~~~i~~~i~~l~ 151 (182)
T cd03215 94 SVA-ENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA 151 (182)
T ss_pred CHH-HHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 099-9951855799899999999999971999999868754589999999999999999
No 118
>PRK07667 uridine kinase; Provisional
Probab=95.72 E-value=0.018 Score=37.37 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=31.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 68870687414889999999996302232364116753
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMD 181 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs 181 (266)
+|-|+|.+|.|||+||-.++......|.+|.+++...-
T Consensus 16 iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~ 53 (190)
T PRK07667 16 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDH 53 (190)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99977989788999999999998665983799966624
No 119
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.70 E-value=0.0086 Score=39.69 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 85111377777655301683688706874148899999999963022323641
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFF 176 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~f 176 (266)
-+.||++.+|-++- +.+|+=+-|=|.+|+|||+++..++.|++.++..|.+|
T Consensus 121 ~l~TGIkaID~l~p-igrGqr~gIfggaGvGKT~Ll~e~i~n~~~~~~~v~V~ 172 (449)
T TIGR03305 121 VFETGIKAIDVLVP-LERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIF 172 (449)
T ss_pred CEECCCEEHHHCCC-CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 40028440230245-24575656652799984101899998656414886899
No 120
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.70 E-value=0.21 Score=29.96 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=39.3
Q ss_pred HHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC-----EEEECCCCCHH
Q ss_conf 37777765530--168368870687414889999999996302232-----36411675348
Q gi|254781149|r 129 LQSVDHLMGGV--QLRELILIGARPSMGKTTFALSTALHMAMSGHG-----VAFFSLEMDRE 183 (266)
Q Consensus 129 ~~~LD~~~gG~--~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~-----Vl~fSlEMs~~ 183 (266)
=.++++++.=+ +..+=.|+-|-||+||||.+-.+|..++....| +-+|||.|+.-
T Consensus 192 ~~Ei~r~i~iL~Rr~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~L 253 (758)
T PRK11034 192 EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL 253 (758)
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH
T ss_conf 89999999999763258960216999869999999999997389976558988998458778
No 121
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.027 Score=36.16 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH----CC------C-----------CEEEEC------CCCC
Q ss_conf 3777776553016836887068741488999999999630----22------3-----------236411------6753
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM----SG------H-----------GVAFFS------LEMD 181 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~----~g------~-----------~Vl~fS------lEMs 181 (266)
.+.||++..-++||+++.|-|+.|.|||++.-.++--..- +| . .+.|.+ -.|+
T Consensus 20 ~~vL~~is~~i~~Gei~~llG~nGsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~v~q~~~~~~~lt 99 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLT 99 (202)
T ss_pred EEEEECEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCHHHHHHHCCEEEECCCCCCCCCCC
T ss_conf 89997708898098499999899998899999983787898751379999999940514864201999867322376880
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHHHH
Q ss_conf 4899999999630223234785550178899899999999999997299547479988989-----99999999999
Q gi|254781149|r 182 REKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGLRN 253 (266)
Q Consensus 182 ~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~k~ 253 (266)
.+|...-.+. ...++. -..|+..|.+++.-|..-+.+.++.+-|.|.-.++ +|....|++.+
T Consensus 100 v~e~l~~~~~---------~~~~~~-~~~LSgGqkqRv~iA~aL~~~P~illlDEPt~gLD~~~~~~i~~~l~~l~~ 166 (202)
T cd03233 100 VRETLDFALR---------CKGNEF-VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMAD 166 (202)
T ss_pred HHHHHHHHHH---------HCCCCC-CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999998---------465874-445899999999999999529988998387656899999999999999998
No 122
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=95.65 E-value=0.11 Score=32.07 Aligned_cols=126 Identities=20% Similarity=0.190 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHH---------CCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC---------CCEEEE--CCCCCHH
Q ss_conf 511137777765530---------1683688706874148899999999963-022---------323641--1675348
Q gi|254781149|r 125 IKWGLQSVDHLMGGV---------QLRELILIGARPSMGKTTFALSTALHMA-MSG---------HGVAFF--SLEMDRE 183 (266)
Q Consensus 125 i~TG~~~LD~~~gG~---------~~g~LiviaaRP~mGKTa~alnia~~~a-~~g---------~~Vl~f--SlEMs~~ 183 (266)
..-.|+++.+..|+| +.|+.+.+.|.-|+|||+|+--+|--.- ..| || .|. ...++-+
T Consensus 341 ~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKP-QyI~~~~~gtV~ 419 (591)
T COG1245 341 TLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKP-QYISPDYDGTVE 419 (591)
T ss_pred EEEECCHHEEECCCEEEEECCCEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEECCC-EEECCCCCCCHH
T ss_conf 0662100201037658995387463354899988887546779999856625787887651475055-340378998299
Q ss_pred HHHHHHHHHHHCCCCC--------CCCHHHCCC---CCCCHHHHHHHHHHHHHHHHCCCEEECCCCC--CHHHHHHHHHH
Q ss_conf 9999999963022323--------478555017---8899899999999999997299547479988--98999999999
Q gi|254781149|r 184 KLGARALSNLLYPSSS--------RIPYLNLIR---GEINQEQYRISQGICEKLQDFPLIIDDRPSP--GIMEFVHVANG 250 (266)
Q Consensus 184 ql~~R~ls~~t~~~~s--------~I~~~~l~~---g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~--ti~~ira~aR~ 250 (266)
|+..+..-... ..+ .+...++.. ..|+..|.+++.-|+.-..+..+|+-|.|+- .+.|=-..+|.
T Consensus 420 ~~l~~~~~~~~--~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 420 DLLRSAIRSAF--GSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred HHHHHHCCCCC--CCCHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHCCHHHHHHHHHH
T ss_conf 99987430001--4505677640744647787460345773258899999986565677886584343068999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254781149|r 251 LRN 253 (266)
Q Consensus 251 ~k~ 253 (266)
++|
T Consensus 498 IRR 500 (591)
T COG1245 498 IRR 500 (591)
T ss_pred HHH
T ss_conf 999
No 123
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.60 E-value=0.023 Score=36.75 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC---
Q ss_conf 11377777655301683688706874148899999999963---022323641167534899999999630223234---
Q gi|254781149|r 127 WGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA---MSGHGVAFFSLEMDREKLGARALSNLLYPSSSR--- 200 (266)
Q Consensus 127 TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a---~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~--- 200 (266)
+|-+-|+++-.-+.+|+++.|-|++|.|||++.--++-... .+| .|.+.....+..++..+ + +.+.+..
T Consensus 20 ~~k~iL~~vs~~v~~Gei~~ilGpnGaGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~-i---g~v~Q~~~l~ 94 (194)
T cd03213 20 SGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG-EVLINGRPLDKRSFRKI-I---GYVPQDDILH 94 (194)
T ss_pred CCCEEEECCEEEEECCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EEEECCEECCHHHHHHE-E---EEECCCCCCC
T ss_conf 99987888388990881999998999519999999857777899628-99999999975784312-8---9984665237
Q ss_pred --------CCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH-----HHHHHHHHHHHH
Q ss_conf --------785-55017889989999999999999729954747998898-----999999999999
Q gi|254781149|r 201 --------IPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI-----MEFVHVANGLRN 253 (266)
Q Consensus 201 --------I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti-----~~ira~aR~~k~ 253 (266)
+.. .++ ..|+..+.+|+.-|..-+.+-++.+-|.|.-.+ .+|....|++++
T Consensus 95 ~~ltv~e~l~~~a~l--~~LSgGqrqRv~iA~aL~~~P~illlDEPTsgLD~~~~~~i~~~l~~l~~ 159 (194)
T cd03213 95 PTLTVRETLMFAAKL--RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD 159 (194)
T ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 768499999999872--69888999999999999639988999489878898999999999999996
No 124
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=95.56 E-value=0.012 Score=38.75 Aligned_cols=40 Identities=30% Similarity=0.476 Sum_probs=25.1
Q ss_pred EECCCCHHHHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHH
Q ss_conf 70687414889999999996302--232364116753489999
Q gi|254781149|r 147 IGARPSMGKTTFALSTALHMAMS--GHGVAFFSLEMDREKLGA 187 (266)
Q Consensus 147 iaaRP~mGKTa~alnia~~~a~~--g~~Vl~fSlEMs~~ql~~ 187 (266)
+||-=|+|||+.+..+|..+|.+ ||.|++.|.. |+..|.+
T Consensus 2 ~gGKGGVGKTt~SaAtA~~lAe~qPGkkvLl~STD-PAHsL~D 43 (330)
T TIGR00345 2 FGGKGGVGKTTISAATAIRLAEQQPGKKVLLVSTD-PAHSLSD 43 (330)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCHHHHH
T ss_conf 77878823888999999999851899779998408-6002788
No 125
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=95.55 E-value=0.01 Score=39.10 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=25.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 6887068741488999999999630223236
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVA 174 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl 174 (266)
+|+|+|.||.||||.|-.+|.+.....-+.+
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Lsl~~iSaG 32 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAG 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEECCC
T ss_conf 7887358968647899999986398312020
No 126
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.53 E-value=0.16 Score=30.84 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=61.9
Q ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCC-CCCCHHHCCC-------
Q ss_conf 53016836887068741488999999999630223236411675348999999996302232-3478555017-------
Q gi|254781149|r 137 GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSS-SRIPYLNLIR------- 208 (266)
Q Consensus 137 gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~-s~I~~~~l~~------- 208 (266)
+++++| | .+-|.||+|||-++-.+|...+.+|.+|.|.+. .+++.++-+....-+. ..| ..+++
T Consensus 154 ~~~~kG-l-yl~G~~G~GKTyL~~aian~La~~g~~v~~v~~----p~~~~~lK~s~~d~s~~~~i--~~~k~~~vLiLD 225 (306)
T PRK08939 154 GEKVKG-L-YLYGDFGVGKTYLLAAIANELAKKGVSSTLVHF----PEFIRELKNAISDGSVKEKI--DAVKEAPVLMLD 225 (306)
T ss_pred CCCCCE-E-EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH----HHHHHHHHHHHCCCCHHHHH--HHHHCCCEEEEE
T ss_conf 988877-8-898999998999999999999986992999875----99999999986489889999--998449989984
Q ss_pred --CCCCHHHHHH--HHHHH-H-HH-HHCCCEEECCCCCCHHHHHHHH
Q ss_conf --8899899999--99999-9-99-7299547479988989999999
Q gi|254781149|r 209 --GEINQEQYRI--SQGIC-E-KL-QDFPLIIDDRPSPGIMEFVHVA 248 (266)
Q Consensus 209 --g~l~~~e~~~--i~~a~-~-~l-~~~pl~IdD~~~~ti~~ira~a 248 (266)
|.=+-.+|.+ +-..+ + ++ .++|.++ |+++++.++....
T Consensus 226 DiGaE~~t~W~rd~vl~~IL~~Rm~~~lPTff--TSN~~~~eLe~~l 270 (306)
T PRK08939 226 DIGAEQMSSWVRDEVLGVILQYRMQEELPTFF--TSNFDFDELEHHL 270 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE--ECCCCHHHHHHHH
T ss_conf 44654267778998999999999974999799--7799999999998
No 127
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.51 E-value=0.021 Score=36.97 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=23.2
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 8706874148899999999963022323641167
Q gi|254781149|r 146 LIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179 (266)
Q Consensus 146 viaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlE 179 (266)
|..++-|+|||+++.|+|...|+.|++|++.-+.
T Consensus 4 v~s~KGGVGKTT~a~NLA~aLa~~g~~vllvD~D 37 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTALAQLGYKVVLIDAD 37 (179)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9739998709999999999999779918999589
No 128
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=95.51 E-value=0.019 Score=37.22 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=17.0
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 8706874148899999999963022323641167
Q gi|254781149|r 146 LIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179 (266)
Q Consensus 146 viaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlE 179 (266)
.|.|.-|+|||+.+.|+|...|..|+.|+++-+.
T Consensus 4 ai~GKGGVGKTTtsvNLA~aLA~~GkrVlliDaD 37 (269)
T pfam00142 4 AIYGKGGIGKSTTSQNTSAALAEMGKKVLIVGCD 37 (269)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9989997688999999999999879909998458
No 129
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=95.49 E-value=0.018 Score=37.43 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999
Q gi|254781149|r 38 AARRVVQQWARITISQEAKALAL 60 (266)
Q Consensus 38 ya~~i~e~~~rR~l~~~~~~~~~ 60 (266)
|...-.|+..|-.+.....+.+.
T Consensus 45 y~~s~~Ek~~R~~l~s~v~r~Ls 67 (266)
T pfam08433 45 YKDSKKEKFLRGSLRSAVKRDLS 67 (266)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 00104789999999999987516
No 130
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=95.46 E-value=0.021 Score=36.95 Aligned_cols=34 Identities=32% Similarity=0.478 Sum_probs=21.1
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 8706874148899999999963022323641167
Q gi|254781149|r 146 LIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179 (266)
Q Consensus 146 viaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlE 179 (266)
|.++.-|+|||+++.|+|...|.+|+.|+++-+.
T Consensus 3 v~s~KGGVGKTT~a~nLA~~la~~G~rVlliD~D 36 (212)
T pfam01656 3 IAGTKGGVGKTTLAANLARALAKRGYRVLLIDLD 36 (212)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9768998069999999999999789978998389
No 131
>CHL00175 minD septum-site determining protein; Validated
Probab=95.46 E-value=0.025 Score=36.48 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=21.6
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 88706874148899999999963022323641167
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlE 179 (266)
.|..+.-|+|||+++.|+|...|..|+.|+++-+.
T Consensus 17 aV~s~KGGVGKTT~a~NLa~aLA~~G~kVlliD~D 51 (279)
T CHL00175 17 VITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 51 (279)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99748998448999999999999789988999578
No 132
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.46 E-value=0.022 Score=36.83 Aligned_cols=45 Identities=13% Similarity=-0.018 Sum_probs=20.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 83688706874148899999999963022323641167534899999999
Q gi|254781149|r 142 RELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALS 191 (266)
Q Consensus 142 g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls 191 (266)
.|++||=-.||+|..+... +.+| ..-++....|+..-....+++.
T Consensus 115 ~D~viiD~pp~l~~~~~~a---l~aa--d~vlipv~~~~~s~~~~~~~~~ 159 (246)
T TIGR03371 115 RDWVLIDLPRGPSPITDQA---LAAA--DLVLVVVNADAACYATLHQLAL 159 (246)
T ss_pred CCEEEEECCCCCCHHHHHH---HHHC--CEEEEEECCCHHHHHHHHHHHH
T ss_conf 9889994899874999999---9988--9479981899899999999999
No 133
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.44 E-value=0.02 Score=37.09 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=57.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC--------------------HHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 68870687414889999999996302232364116753--------------------4899999999630223234785
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMD--------------------REKLGARALSNLLYPSSSRIPY 203 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs--------------------~~ql~~R~ls~~t~~~~s~I~~ 203 (266)
+|-|||-+|.|||+||-.++.....+|.+|.++|+.-= .-+++.+-|..+-.=..-.+|.
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vis~D~yy~~~~~~~~~~~n~D~p~a~d~~ll~~~L~~L~~g~~v~~P~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98998989778999999999998464885399954666457652000146889813534999999999997799557542
Q ss_pred HHCCCCCCCHH--------------HHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 55017889989--------------99999999999972995474799889899999999999994
Q gi|254781149|r 204 LNLIRGEINQE--------------QYRISQGICEKLQDFPLIIDDRPSPGIMEFVHVANGLRNKH 255 (266)
Q Consensus 204 ~~l~~g~l~~~--------------e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k~k~ 255 (266)
.++.++.-... -.-.+...+..+-++.+|||... ++.--+||++|..
T Consensus 81 YDf~t~~r~~~~~~~~~p~~vIIvEGi~~l~~~lr~~~D~kIfvd~~~-----~~~Rl~RRi~RD~ 141 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGV-----HLNRLLRRVVRDI 141 (179)
T ss_pred EECCCCCCCCCCEEEECCCCEEEEECHHHCCHHHHHHCCEEEEEECCC-----HHHHHHHHHHHHH
T ss_conf 004378606980596089978999243438998997668699997883-----6888899999779
No 134
>KOG1564 consensus
Probab=95.44 E-value=0.01 Score=39.13 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH--C----CCCEEEECCCCCHH
Q ss_conf 8511137777765-53016836887068741488999999999630--2----23236411675348
Q gi|254781149|r 124 DIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAM--S----GHGVAFFSLEMDRE 183 (266)
Q Consensus 124 Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~--~----g~~Vl~fSlEMs~~ 183 (266)
-+.||-..||+.+ ||.--+.+.=|.|+.|.|||-|++++++.+-. + |+.++|++.|-+-.
T Consensus 83 ~lttgc~~LD~~L~GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP 149 (351)
T KOG1564 83 KLTTGCVALDECLRGGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFP 149 (351)
T ss_pred HCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCCCCCCEEEEECCCCCC
T ss_conf 1104558888874499334548888602577588999999988608551089777439997688874
No 135
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.40 E-value=0.19 Score=30.33 Aligned_cols=94 Identities=11% Similarity=0.033 Sum_probs=57.7
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHH----
Q ss_conf 0168368870687414889999999996302232364116753489999999963022323478555017889989----
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQE---- 214 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~---- 214 (266)
-++|-.+-+-|.||.|||++|-.+.......|.++.++ ..+++-..+... .. ++.+
T Consensus 21 ~~kg~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~L----DGD~lR~~l~~d--------lg--------fs~~dR~~ 80 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVHTYLL----DGDNVRHGLCSD--------LG--------FSDADRKE 80 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE----CHHHHHHHHCCC--------CC--------CCHHHHHH
T ss_conf 89986999879999988999999999999759975997----779998743667--------89--------89999999
Q ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999972995474799889899999999999
Q gi|254781149|r 215 QYRISQGICEKLQDFPLIIDDRPSPGIMEFVHVANGLR 252 (266)
Q Consensus 215 e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k 252 (266)
-..++...+..+.+..+.+-.+.---..+.|..+|...
T Consensus 81 n~~r~~~lak~l~~~G~iVIvs~Isp~~~~R~~~R~~~ 118 (198)
T PRK03846 81 NIRRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERL 118 (198)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHC
T ss_conf 99999999999985898366414788799999999867
No 136
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.37 E-value=0.2 Score=30.14 Aligned_cols=125 Identities=16% Similarity=0.130 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC------------CE-EEE-----------
Q ss_conf 13777776553016836887068741488999999999630-------223------------23-641-----------
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH------------GV-AFF----------- 176 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~------------~V-l~f----------- 176 (266)
.+..|+.+---+.+|+.+.|-|..|.|||+++.-++--.-. .|. .| .+|
T Consensus 19 ~v~aL~~is~~i~~Ge~~aiiG~sGsGKSTL~~~l~Gl~~~~~G~I~~~G~~i~~~~~~~~r~~ig~VfQ~p~~~l~~~t 98 (277)
T PRK13642 19 DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGIVKIDGERLTAENVWNLRRKIGMVFQNPDNQFVGAT 98 (277)
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 88664430799889989999999996899999999638998884899999999857888885176899989763257550
Q ss_pred -------CC---CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH----
Q ss_conf -------16---7534899999999630223234785550178899899999999999997299547479988989----
Q gi|254781149|r 177 -------SL---EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM---- 242 (266)
Q Consensus 177 -------Sl---EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~---- 242 (266)
.+ -++.+++..|+...+-.+.... ..+-.-..|+-.+.+++.-|..-..+-.+.|-|.|.-.++
T Consensus 99 V~e~i~~g~~~~~~~~~e~~~~v~~~l~~~~l~~--~~~~~P~~LSGGqrQRvaIA~aLa~~P~ililDEPTs~LD~~~~ 176 (277)
T PRK13642 99 VEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD--FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176 (277)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH--HHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 8888987776669999999999999998779965--65579122899999999999999669999999588765898999
Q ss_pred -HHHHHHHHHHHH
Q ss_conf -999999999999
Q gi|254781149|r 243 -EFVHVANGLRNK 254 (266)
Q Consensus 243 -~ira~aR~~k~k 254 (266)
+|....++++++
T Consensus 177 ~~i~~ll~~L~~~ 189 (277)
T PRK13642 177 SEIMRVIHEIKDK 189 (277)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999981
No 137
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.36 E-value=0.13 Score=31.51 Aligned_cols=131 Identities=14% Similarity=0.061 Sum_probs=78.0
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC------------C----EEEE--CCCCCH-HHHHHHHHHH
Q ss_conf 7776553016836887068741488999999999630223------------2----3641--167534-8999999996
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGH------------G----VAFF--SLEMDR-EKLGARALSN 192 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~------------~----Vl~f--SlEMs~-~ql~~R~ls~ 192 (266)
|+++---.+|||+++|-|-.|+|||++.--++-.+-..+- | .... ++|-+- +....+-+..
T Consensus 399 lr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~~p~nt~~a~iPge~Ep~f~~~tilehl~s 478 (593)
T COG2401 399 LRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRS 478 (593)
T ss_pred EECEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 40203686478768999248877311999998776435620247877721034431321067655544573118998752
Q ss_pred HHCC--------CCCCCCHHHCCC---CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3022--------323478555017---88998999999999999972995474799889899999999999994799986
Q gi|254781149|r 193 LLYP--------SSSRIPYLNLIR---GEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFVHVANGLRNKHTKMVQL 261 (266)
Q Consensus 193 ~t~~--------~~s~I~~~~l~~---g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k~k~~~~~~~ 261 (266)
.+|. +.+++...-+++ ++|++.+.++..-|.---...++++-|...--++++ .|.++.|+-.++.|-
T Consensus 479 ~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~--TA~rVArkiselARe 556 (593)
T COG2401 479 KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDEL--TAVRVARKISELARE 556 (593)
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHCCHH--HHHHHHHHHHHHHHH
T ss_conf 368636789999760453054300467553854577789999973489817735666431779--999999999999997
Q ss_pred HHH
Q ss_conf 421
Q gi|254781149|r 262 YRL 264 (266)
Q Consensus 262 ~~~ 264 (266)
+|.
T Consensus 557 ~gi 559 (593)
T COG2401 557 AGI 559 (593)
T ss_pred HCC
T ss_conf 097
No 138
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.18 Score=30.50 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=58.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH--HHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 8368870687414889999999996302232364116753489999--99996302232347855501788998999999
Q gi|254781149|r 142 RELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGA--RALSNLLYPSSSRIPYLNLIRGEINQEQYRIS 219 (266)
Q Consensus 142 g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~--R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i 219 (266)
-+.|.+-|.+|+|||+..--+|.+...+++.|.+.++.==+---.+ |..+.+ -++|..-. -+.++....
T Consensus 241 ~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeI-----MgVPV~VV----~dp~eL~~A 311 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT-----IGFEVIAV----RDEAAMTRA 311 (436)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH-----HCCCEEEE----CCHHHHHHH
T ss_conf 717999899998889999999999861698089998066347699999999998-----49943996----888999999
Q ss_pred HHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 99999997299547479988989
Q gi|254781149|r 220 QGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 220 ~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
....++.++..+.+-||+|.+-.
T Consensus 312 L~~lkdka~~DLILIDTAGRS~R 334 (436)
T PRK11889 312 LTYFKEEARVDYILIDTAGKNYR 334 (436)
T ss_pred HHHHHHCCCCCEEEEECCCCCCC
T ss_conf 99876336888899929898846
No 139
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.35 E-value=0.15 Score=30.99 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEECCC--CCHHHHHHHHHHHHHC
Q ss_conf 7777655301683688706874148899999999963022--323641167--5348999999996302
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSG--HGVAFFSLE--MDREKLGARALSNLLY 195 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g--~~Vl~fSlE--Ms~~ql~~R~ls~~t~ 195 (266)
.|...+.|-.|++++ |-|.||.|||+.+-.+........ ..+.+...- =+..+++.++...+.+
T Consensus 45 ~l~~~l~g~~~~n~~-I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i~~~i~~~L~~ 112 (394)
T PRK00411 45 ALRPALRGSRPSNVL-ILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRYAILSEIARSLFG 112 (394)
T ss_pred HHHHHHCCCCCCCEE-EECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999997599998479-98899998999999999999974689659999696689899999999999569
No 140
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.34 E-value=0.12 Score=31.82 Aligned_cols=124 Identities=16% Similarity=0.143 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC----------CEE-EE--------------
Q ss_conf 3777776553016836887068741488999999999630-------223----------236-41--------------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH----------GVA-FF-------------- 176 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~----------~Vl-~f-------------- 176 (266)
...||++---+.+|+++.|-|..|.|||++.--|+--.-- .|+ .+. +|
T Consensus 17 ~~al~~vsl~i~~Ge~~~llGpsG~GKTTllr~iaGl~~p~~G~I~~~g~~v~~~~~~~R~i~~vfQ~~~L~p~ltV~en 96 (358)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVREN 96 (358)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHHH
T ss_conf 97982527798899899999998636999999997699988629999999999999778757677255544878748786
Q ss_pred ---CC---CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHH
Q ss_conf ---16---7534899999999630223234785550178899899999999999997299547479988989-----999
Q gi|254781149|r 177 ---SL---EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFV 245 (266)
Q Consensus 177 ---Sl---EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ir 245 (266)
.| -++++++-.|+...+.-+..+. +-+-+-.+|+..+..++.-|-.-+.+-.+.+-|.|.-.++ +++
T Consensus 97 i~~~l~~~~~~~~~~~~rv~~~l~~l~l~~--~~~r~p~~LSGGq~QRvalARAL~~~P~vlllDEP~s~LD~~~r~~~~ 174 (358)
T PRK11650 97 MAYGLKIRGMPKAEIEERVAEAARILELEP--LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMR 174 (358)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCC--HHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 655787628864678899999987522624--224897478956789999835750499868873887767998999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254781149|r 246 HVANGLRNK 254 (266)
Q Consensus 246 a~aR~~k~k 254 (266)
...++++++
T Consensus 175 ~~l~~l~~~ 183 (358)
T PRK11650 175 LEIQRLHRR 183 (358)
T ss_pred HHHHHHHHH
T ss_conf 999999997
No 141
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.33 E-value=0.28 Score=29.10 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=66.5
Q ss_pred HHHHHHHHHHCCCC-EEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCC
Q ss_conf 77777655301683-6887068741488999999999630223-236411675348999999996302232347855501
Q gi|254781149|r 130 QSVDHLMGGVQLRE-LILIGARPSMGKTTFALSTALHMAMSGH-GVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLI 207 (266)
Q Consensus 130 ~~LD~~~gG~~~g~-LiviaaRP~mGKTa~alnia~~~a~~g~-~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~ 207 (266)
..|..+..|++.+. +++|-|.||+|||++.-.++.+.-.... .+.++.--++..++..-+++.. +++...
T Consensus 30 ~al~~L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~l------g~~~~~-- 101 (269)
T TIGR03015 30 RAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADF------GLETEG-- 101 (269)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHC------CCCCCC--
T ss_conf 999999999964896599972998988999999998459345489997699999999999999985------989889--
Q ss_pred CCCCCHHHHHHHHHHHHHHHH---CC-CEEECCCCCCHHHHHHHHHHH
Q ss_conf 788998999999999999972---99-547479988989999999999
Q gi|254781149|r 208 RGEINQEQYRISQGICEKLQD---FP-LIIDDRPSPGIMEFVHVANGL 251 (266)
Q Consensus 208 ~g~l~~~e~~~i~~a~~~l~~---~p-l~IdD~~~~ti~~ira~aR~~ 251 (266)
.-..+-+..+.+....+.. -| |-||+.-.++..-+.. .|.+
T Consensus 102 --~~~~~~~~~l~~~L~~~~~~g~~~vliIDEAq~L~~~~Le~-Lr~L 146 (269)
T TIGR03015 102 --RDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEE-LRML 146 (269)
T ss_pred --CCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHH-HHHH
T ss_conf --89999999999999999966994699972422199999999-9999
No 142
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.11 Score=31.88 Aligned_cols=116 Identities=18% Similarity=0.169 Sum_probs=65.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC---HHHHHHHH--HHHHHCCCCC------
Q ss_conf 777765530168368870687414889999999996302232364116753---48999999--9963022323------
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMD---REKLGARA--LSNLLYPSSS------ 199 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs---~~ql~~R~--ls~~t~~~~s------ 199 (266)
.|+++.--..+|+=+-|-||.|+|||++..-++.+---+...+.+-..|+. ...+.+.+ +.+...+=..
T Consensus 353 ~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL 432 (573)
T COG4987 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNL 432 (573)
T ss_pred HHHCCCEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 21056513258876888779998789999999723587887365788673318836689987541232177777899877
Q ss_pred -----------------CCCHHH------------CC-CC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHH
Q ss_conf -----------------478555------------01-78-8998999999999999972995474799889899999
Q gi|254781149|r 200 -----------------RIPYLN------------LI-RG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFVH 246 (266)
Q Consensus 200 -----------------~I~~~~------------l~-~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira 246 (266)
.+...+ +- .| .++-.|.+|+.-|---+.+.|+||-|.|.-.++-+..
T Consensus 433 ~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE 510 (573)
T COG4987 433 RLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE 510 (573)
T ss_pred HHCCCCCCHHHHHHHHHHCCHHHHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf 305999988999999998187999874735342222259974781389999999999707986884488666786439
No 143
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.32 E-value=0.28 Score=29.08 Aligned_cols=126 Identities=19% Similarity=0.281 Sum_probs=74.3
Q ss_pred HHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC-----EEEECCCCCHH--------HHHHHHHHHHH
Q ss_conf 7777765530--168368870687414889999999996302232-----36411675348--------99999999630
Q gi|254781149|r 130 QSVDHLMGGV--QLRELILIGARPSMGKTTFALSTALHMAMSGHG-----VAFFSLEMDRE--------KLGARALSNLL 194 (266)
Q Consensus 130 ~~LD~~~gG~--~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~-----Vl~fSlEMs~~--------ql~~R~ls~~t 194 (266)
.++.+++.=+ +..+=.|+-|-||+||||.+-.+|..++....| .-+|||.|..- +.-.|+-+.+.
T Consensus 186 ~EI~r~i~IL~RR~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGeFEeRlk~il~ 265 (823)
T CHL00095 186 KEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGEFEERIKKIMD 265 (823)
T ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999997732488502379998799999999997608899868759936884288775334222679999999999
Q ss_pred CC--------------------------CCCCCCHHHCCCCCC------CHHHHHHHHHHHHHHHH--CCCEEECCCCCC
Q ss_conf 22--------------------------323478555017889------98999999999999972--995474799889
Q gi|254781149|r 195 YP--------------------------SSSRIPYLNLIRGEI------NQEQYRISQGICEKLQD--FPLIIDDRPSPG 240 (266)
Q Consensus 195 ~~--------------------------~~s~I~~~~l~~g~l------~~~e~~~i~~a~~~l~~--~pl~IdD~~~~t 240 (266)
.+ +.+++=-+.+.+|++ +.+|++++.+.-.-+.+ -++.|+. +|
T Consensus 266 ei~~~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel~~IGATT~~EYrk~iEkD~AL~RRFq~V~V~E---Ps 342 (823)
T CHL00095 266 EIKKANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKLQCIGATTLEEYRKHIEKDPALERRFQPVYVGE---PS 342 (823)
T ss_pred HHHHCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCC---CC
T ss_conf 998579869997351653288976664317887657864898669970788999998530588996268410289---98
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999994799
Q gi|254781149|r 241 IMEFVHVANGLRNKHTKM 258 (266)
Q Consensus 241 i~~ira~aR~~k~k~~~~ 258 (266)
+.+-....|.++.+|++-
T Consensus 343 ~e~t~~IL~gl~~~yE~~ 360 (823)
T CHL00095 343 VEETIEILLGLRDRYEKH 360 (823)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 799999999999999875
No 144
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.31 E-value=0.087 Score=32.68 Aligned_cols=110 Identities=18% Similarity=0.264 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH------------C---CC-CEEEECCCCC-HHHH
Q ss_conf 8511137777765-53016836887068741488999999999630------------2---23-2364116753-4899
Q gi|254781149|r 124 DIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAM------------S---GH-GVAFFSLEMD-REKL 185 (266)
Q Consensus 124 Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~------------~---g~-~Vl~fSlEMs-~~ql 185 (266)
=|+||.++||+++ ||..-.-.+=+.|-=|.|||-++=++|.|+=. + +. .|.|+.-|=+ +-|
T Consensus 77 kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnVQlP~flfydeeave~GGL~gp~av~IDTEnTFRPE- 155 (333)
T TIGR02236 77 KITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEFLFYDEEAVEKGGLEGPKAVYIDTENTFRPE- 155 (333)
T ss_pred EEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCEEEEEECCCCCCHH-
T ss_conf 0444863676560796000058887710078657876676553228711210110001477678768998559798625-
Q ss_pred HHHHHHHHHCCCCC------CCCHHHCC------CCCCCHHHH---HHHHHHHHHHHH--CC--CEEECC
Q ss_conf 99999963022323------47855501------788998999---999999999972--99--547479
Q gi|254781149|r 186 GARALSNLLYPSSS------RIPYLNLI------RGEINQEQY---RISQGICEKLQD--FP--LIIDDR 236 (266)
Q Consensus 186 ~~R~ls~~t~~~~s------~I~~~~l~------~g~l~~~e~---~~i~~a~~~l~~--~p--l~IdD~ 236 (266)
|+.-+.-|++.. .++...+- ++-=|+.++ +++.+.+++..+ +| |-|=|+
T Consensus 156 --RI~qmA~GL~~g~l~~~melD~~evL~nI~vARAyNS~HQmllve~~~~li~e~~~~~~pv~L~~VDS 223 (333)
T TIGR02236 156 --RIEQMAKGLARGTLQAAMELDPDEVLKNIYVARAYNSNHQMLLVEKAKELIKELKNEDKPVRLLIVDS 223 (333)
T ss_pred --HHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf --79999986311136665327877772030477852631479999999999973015799468999812
No 145
>PRK10818 cell division inhibitor MinD; Provisional
Probab=95.31 E-value=0.026 Score=36.28 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=32.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 8368870687414889999999996302232364116753489999999963
Q gi|254781149|r 142 RELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNL 193 (266)
Q Consensus 142 g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~ 193 (266)
=|.|+|=-.||.|..++. +..+| ..-++..+.|...-.=+.|++..+
T Consensus 114 yDyIiID~ppgl~~~~~~---al~aa--d~vlvv~tpe~~al~da~~ll~~l 160 (270)
T PRK10818 114 FEFIVCDSPAGIETGALM---ALYFA--DEAIITTNPEVSSVRDSDRILGIL 160 (270)
T ss_pred CCEEEECCCCCCCHHHHH---HHHHC--CEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 989998899986689999---99858--968997389788998799999999
No 146
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.31 E-value=0.025 Score=36.42 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=33.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 8870687414889999999996302232364116753
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMD 181 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs 181 (266)
.|..|..|+|||+++.|+|...+..|+.|+++.+...
T Consensus 3 ~v~s~kggvgkst~~~~la~~l~~~g~~v~~~d~di~ 39 (169)
T cd02037 3 AVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIY 39 (169)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 9974999881999999999999987997899971379
No 147
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.31 E-value=0.026 Score=36.30 Aligned_cols=45 Identities=31% Similarity=0.285 Sum_probs=38.1
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 88706874148899999999963022323641167534899999999
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALS 191 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls 191 (266)
|.+.|.-|+|||+++.++|...+.+|++|+.+....+ .+-.++..
T Consensus 2 ia~~GKGGvGKtt~~~~la~~l~~~g~~vl~iD~Dp~--dlpe~~~~ 46 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPD--DLPERLSV 46 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC--CCHHHHCE
T ss_conf 7898899774999999999999978996999989897--12355423
No 148
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.11 Score=31.85 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=16.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 777776553016836887068741488999999
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALST 162 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alni 162 (266)
..||++.--+.+|+++.|-|.-|.|||++...+
T Consensus 20 ~aL~~isl~I~~Ge~~aiiG~NGaGKSTLl~~i 52 (285)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNL 52 (285)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCHHHHHHHHH
T ss_conf 887613789879989999999998099999999
No 149
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.29 Score=29.04 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 3777776553016836887068741488999999
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALST 162 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alni 162 (266)
++.||++.--+.+|+++.|-|..|.|||+|+..+
T Consensus 20 ~~AL~dvsl~I~~GE~v~IiG~nGsGKSTL~k~l 53 (304)
T PRK13651 20 LKALDGVSTEINQGEFIAIIGQTGSGKTTFIEHL 53 (304)
T ss_pred CEEEECEEEEECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 4686340579859989999879998599999999
No 150
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.29 E-value=0.15 Score=30.94 Aligned_cols=123 Identities=12% Similarity=0.081 Sum_probs=74.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CCC------------EEEE---------------
Q ss_conf 7777655301683688706874148899999999963-02------232------------3641---------------
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GHG------------VAFF--------------- 176 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~~------------Vl~f--------------- 176 (266)
.|+++.--+.+|+++-|-|+-|.|||+++.-++--.- .+ |++ |.|.
T Consensus 24 ~L~~is~~i~~Ge~vaiiG~sGsGKSTLl~ll~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ig~vfQ~p~~~~~~~tv~~ 103 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVKY 103 (269)
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHCEEEEECHHHHCCCCHHHH
T ss_conf 56645899859989999999999799999999649799850999999999988989997502699887132047217999
Q ss_pred ----CCC---CCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HH
Q ss_conf ----167---534899999999630223234785550178899899999999999997299547479988989-----99
Q gi|254781149|r 177 ----SLE---MDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EF 244 (266)
Q Consensus 177 ----SlE---Ms~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~i 244 (266)
+++ .+.+++..|+-..+..+..... .+-.-..|+-.+..++.-|..-+.+-++.|-|.|.-.++ +|
T Consensus 104 ~i~~gl~~~~~~~~e~~~~v~~~L~~~~l~~~--~~~~p~~LSGGqkQRvaiAraL~~~P~iLilDEPTs~LD~~~~~~i 181 (269)
T PRK13648 104 DVAFGLENHAVPYDEMHRRVSEALKQVDMLER--ADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNL 181 (269)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH--HHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHH
T ss_conf 99733644699999999999999987699134--4189643899999999999999759899998187554899999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999994
Q gi|254781149|r 245 VHVANGLRNKH 255 (266)
Q Consensus 245 ra~aR~~k~k~ 255 (266)
....+++++++
T Consensus 182 ~~ll~~L~~~~ 192 (269)
T PRK13648 182 LDLVRKVKSEH 192 (269)
T ss_pred HHHHHHHHHCC
T ss_conf 99999999737
No 151
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.29 E-value=0.024 Score=36.53 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=30.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 887068741488999999999630223236411
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFS 177 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fS 177 (266)
+++++.-|+|||+++.|+|...+++|++|+.+.
T Consensus 2 i~~~~~kGvGKTT~a~~La~~la~~g~~Vl~vD 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 898589977689999999999998899699986
No 152
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.26 E-value=0.13 Score=31.48 Aligned_cols=108 Identities=14% Similarity=0.005 Sum_probs=67.5
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCC------C--------EE------EECCCCCHHHHHHHHHHHH
Q ss_conf 6553016836887068741488999999999630-223------2--------36------4116753489999999963
Q gi|254781149|r 135 LMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGH------G--------VA------FFSLEMDREKLGARALSNL 193 (266)
Q Consensus 135 ~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~------~--------Vl------~fSlEMs~~ql~~R~ls~~ 193 (266)
+.-.+.||+++.|-|+-|.|||+|.--++--..- +|. + +. .+.++|+..+-.. +.+..
T Consensus 19 isl~i~~G~i~~i~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~~~~~~~~~~i~~~~~l~~~ltv~enl~-~~~~~ 97 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLK-FWSEI 97 (195)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHHCHHHCEEECCCCCCCCCCCHHHHHH-HHHHH
T ss_conf 77787799799999999981999999996798898408999999920324635366355346787776999999-99986
Q ss_pred HCC------CCCCCCHHHC---CCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 022------3234785550---1788998999999999999972995474799889899
Q gi|254781149|r 194 LYP------SSSRIPYLNL---IRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 194 t~~------~~s~I~~~~l---~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
.+. ....+...++ +-+.|+..+.+++.=|..-+.+.+++|-|.|.-.++.
T Consensus 98 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrv~iAral~~~p~llllDEPt~~LD~ 156 (195)
T PRK13541 98 YNSVETLYAAIHYFKLHDLLDEKCYSLSSGMQKVVALARLIACQSDLWLLDEVETNLSK 156 (195)
T ss_pred CCHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 28399999999984987566486645999999999999999709999999787655999
No 153
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.25 E-value=0.17 Score=30.69 Aligned_cols=113 Identities=15% Similarity=0.100 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CC---------------CEEE----------E
Q ss_conf 377777655301683688706874148899999999963-02------23---------------2364----------1
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GH---------------GVAF----------F 176 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~---------------~Vl~----------f 176 (266)
++.||++.--+++|+.+.|-|..|.|||++.--++--.. .+ |+ +.+| |
T Consensus 17 ~~al~~vsl~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~ig~vfQ~~~L~p~~tv~eni~~ 96 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 99996718898799899999999957999999997599988738999999678889887999248853778879999988
Q ss_pred CC---CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 16---75348999999996302232347855501788998999999999999972995474799889899
Q gi|254781149|r 177 SL---EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 177 Sl---EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
.+ .++.++...|....+..+..... .+-+-++|+-.+.+|+.-|..-+.+-++.+-|.|.-.++.
T Consensus 97 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~--~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPts~LD~ 164 (220)
T cd03293 97 GLELQGVPKAEARERAEELLELVGLSGF--ENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHH--HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 9986599989999999999998789547--6189312999999999999998669999998088765699
No 154
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.25 E-value=0.04 Score=35.01 Aligned_cols=118 Identities=18% Similarity=0.193 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEECCCCCHHHHHHHHHHHHHCCCCCC-----
Q ss_conf 377777655301683688706874148899999999963022---323641167534899999999630223234-----
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSG---HGVAFFSLEMDREKLGARALSNLLYPSSSR----- 200 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g---~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~----- 200 (266)
.+-|+++..-++||+++.|-|+.|.|||++.--++-. -..+ ..+.+-..+.+. -..|.++ .+.+..
T Consensus 20 ~~vL~~is~~i~~Ge~~~llGpnGaGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~~--~~~~~ig---yv~q~~~~~~~ 93 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR-KTAGVITGEILINGRPLDK--NFQRSTG---YVEQQDVHSPN 93 (192)
T ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCC-CCCCCEEEEEEECCEECCH--HHHHHEE---EEECCHHCCCC
T ss_conf 7999883889928839999999999889999998379-8788317899987827667--7562279---99411330734
Q ss_pred ------CCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH-----HHHHHHHHHHHH
Q ss_conf ------78555017889989999999999999729954747998898-----999999999999
Q gi|254781149|r 201 ------IPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI-----MEFVHVANGLRN 253 (266)
Q Consensus 201 ------I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti-----~~ira~aR~~k~ 253 (266)
+.... .-..|+..|.+++.-|..-+.+-++.+-|.|.-.+ .+|....|++++
T Consensus 94 ~tv~e~l~~~~-~l~~LS~gqrqrv~iA~aL~~~P~lllLDEPt~gLD~~~~~~i~~~l~~l~~ 156 (192)
T cd03232 94 LTVREALRFSA-LLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD 156 (192)
T ss_pred CHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 54999998667-7733797676589999998449988998488768898999999999999996
No 155
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.25 E-value=0.22 Score=29.93 Aligned_cols=125 Identities=18% Similarity=0.153 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC-----------------------CEEEEC-
Q ss_conf 3777776553016836887068741488999999999630-------223-----------------------236411-
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH-----------------------GVAFFS- 177 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~-----------------------~Vl~fS- 177 (266)
...||++.--+.+|+.+.|-|..|.|||++.-.++--.-- .|+ +.+|-+
T Consensus 13 ~~~L~~isl~i~~Ge~~~iiG~SGsGKSTll~~i~gL~~p~~G~I~~~g~~i~~~~~~~~~~~r~~ig~vfQ~~~Lf~~l 92 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL 92 (235)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHCCEEEEECCCCCCCCC
T ss_conf 98882606488799899999999972999999997599989858999999999899889999757829970498658999
Q ss_pred ---------C----CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH---
Q ss_conf ---------6----753489999999963022323478555017889989999999999999729954747998898---
Q gi|254781149|r 178 ---------L----EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI--- 241 (266)
Q Consensus 178 ---------l----EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti--- 241 (266)
+ .++.+++-.|....+..+..... .+-+-++|+-.+..|+.-|-.-+.+-++.+-|.|.-.+
T Consensus 93 Tv~eNv~~~l~~~~~~~~~~~~~r~~~~L~~vgL~~~--~~~~p~~LSGGq~QRvaIARALv~~P~illlDEPts~LDp~ 170 (235)
T cd03261 93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA--EDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170 (235)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH--HHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 6999999999995799999999999999986799257--64784106999999999999985489989980886647989
Q ss_pred --HHHHHHHHHHHHHH
Q ss_conf --99999999999994
Q gi|254781149|r 242 --MEFVHVANGLRNKH 255 (266)
Q Consensus 242 --~~ira~aR~~k~k~ 255 (266)
.+|..-.+.+++++
T Consensus 171 ~~~~i~~li~~l~~~~ 186 (235)
T cd03261 171 ASGVIDDLIRSLKKEL 186 (235)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999972
No 156
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.22 E-value=0.17 Score=30.63 Aligned_cols=125 Identities=14% Similarity=0.075 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCCCE--------EEE-----------------
Q ss_conf 3777776553016836887068741488999999999630-------22323--------641-----------------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGHGV--------AFF----------------- 176 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~~V--------l~f----------------- 176 (266)
-+.||++.--+.+|+++.|-|+.|.|||++.--++--.-- .|+++ .+|
T Consensus 14 ~~~L~dvsl~i~~Ge~~~lvGpnGaGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~g~vfQ~~~l~p~~tv~env~~ 93 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPPQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAF 93 (255)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHCEEEECCCCCCCCCCHHHHHHH
T ss_conf 98881317798699899999999846999999997599889971857996478862110699455754756879999998
Q ss_pred CCC---CCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHH
Q ss_conf 167---534899999999630223234785550178899899999999999997299547479988989-----999999
Q gi|254781149|r 177 SLE---MDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVA 248 (266)
Q Consensus 177 SlE---Ms~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~a 248 (266)
.++ ++..+.-.|....+..+...... +-+-++|+..+..++.-|..-+.+-++.+-|.|.-.++ ++..-.
T Consensus 94 ~l~~~g~~~~~~~~~~~~~L~~vgL~~~~--~~~p~~LSGGqkQRVaiArAL~~~P~iLllDEPt~~LD~~~r~~l~~ll 171 (255)
T PRK11248 94 GLQLAGVEKMQRLEIAHQMLKKVGLEGAE--KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQELL 171 (255)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHH--CCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99874898789999999999976990244--1893349999999999999997299999980887779989999999999
Q ss_pred HHHHHHH
Q ss_conf 9999994
Q gi|254781149|r 249 NGLRNKH 255 (266)
Q Consensus 249 R~~k~k~ 255 (266)
+++.+++
T Consensus 172 ~~l~~~~ 178 (255)
T PRK11248 172 LKLWQET 178 (255)
T ss_pred HHHHHHC
T ss_conf 9999961
No 157
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.22 E-value=0.2 Score=30.16 Aligned_cols=123 Identities=16% Similarity=0.121 Sum_probs=74.8
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC--------------------------CCE-EE-------
Q ss_conf 7777655301683688706874148899999999963-022--------------------------323-64-------
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG--------------------------HGV-AF------- 175 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g--------------------------~~V-l~------- 175 (266)
.+|++---..+||+++|-|..|+|||++.-.++--.- .+| +.+ ++
T Consensus 39 AV~dvsl~I~~GEi~~lvGpSGsGKSTLLr~i~GL~~pt~G~I~i~~~~~~~d~~~~~~~~lr~~R~~~IgmVFQ~~aL~ 118 (382)
T TIGR03415 39 GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALM 118 (382)
T ss_pred EEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCC
T ss_conf 89651748879989999999973499999999759998852999926864224565998998763057669996378646
Q ss_pred ----------ECCC---CCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf ----------1167---534899999999630223234785550178899899999999999997299547479988989
Q gi|254781149|r 176 ----------FSLE---MDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 176 ----------fSlE---Ms~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
|.|+ +++.+...|....+.-+..+.. .+-+-++|+-.+.+|+.-|-.-..+-++.+-|.|--.+.
T Consensus 119 P~~TV~eNia~~L~~~g~~~~e~~~rv~e~L~~VgL~~~--~~~yP~eLSGGqqQRVaIARALa~~P~iLLmDEPfsaLD 196 (382)
T TIGR03415 119 PWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW--ADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196 (382)
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH--HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 568199999899988699999999999999873598465--547955579889999999999863899899708876559
Q ss_pred H-----HHHHHHHHHHHH
Q ss_conf 9-----999999999994
Q gi|254781149|r 243 E-----FVHVANGLRNKH 255 (266)
Q Consensus 243 ~-----ira~aR~~k~k~ 255 (266)
- ++...++++++.
T Consensus 197 ~~~r~~l~~~l~~L~~~~ 214 (382)
T TIGR03415 197 PLIRTQLQDELLELQAKL 214 (382)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999986
No 158
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.22 E-value=0.17 Score=30.64 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCC----------CE--EE-------------
Q ss_conf 1377777655301683688706874148899999999963-0------223----------23--64-------------
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGH----------GV--AF------------- 175 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~----------~V--l~------------- 175 (266)
|...||++---+.+|+++.|-|..|.|||++.--++--.. . .|+ .+ +|
T Consensus 29 ~~~aL~~vsl~I~~GE~~~llGpSGsGKSTLlr~iaGl~~p~sG~I~~~G~~v~~~~~~~R~ig~VfQ~~aLfp~lTV~e 108 (378)
T PRK09452 29 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRYVNTVFQSYALFPHMTVFE 108 (378)
T ss_pred CEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 99999362779999989999989997699999999769999846999999998989978988589922764378986999
Q ss_pred ---ECC---CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HH
Q ss_conf ---116---7534899999999630223234785550178899899999999999997299547479988989-----99
Q gi|254781149|r 176 ---FSL---EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EF 244 (266)
Q Consensus 176 ---fSl---EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~i 244 (266)
|.+ -++..++..|+...+..+..+.. .+-+-.+|+..+..++.-|-.-+.+-.+.+-|.|.-.++ ++
T Consensus 109 Nv~~~l~~~~~~~~e~~~rv~e~L~~v~L~~~--~~r~p~~LSGGqqQRVaiARAL~~~P~vLLLDEPts~LD~~~r~~~ 186 (378)
T PRK09452 109 NVAFGLRMQKTPAAEITPRVMEALRMVQLEEF--AQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM 186 (378)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH--HHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 99989976599879999999999875073435--4368354998899999999986239989995786444799999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999994
Q gi|254781149|r 245 VHVANGLRNKH 255 (266)
Q Consensus 245 ra~aR~~k~k~ 255 (266)
+...|+++++.
T Consensus 187 ~~~l~~l~~~~ 197 (378)
T PRK09452 187 QNELKALQRKL 197 (378)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999984
No 159
>KOG1434 consensus
Probab=95.21 E-value=0.029 Score=36.02 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=86.8
Q ss_pred CCCCCCHHHHHHHHHHH-HCCCCEEEEECCCCHHHHHHHHHHHHHHHHC------CCCEEEECCCCCH-----HHHHHHH
Q ss_conf 67851113777776553-0168368870687414889999999996302------2323641167534-----8999999
Q gi|254781149|r 122 NPDIKWGLQSVDHLMGG-VQLRELILIGARPSMGKTTFALSTALHMAMS------GHGVAFFSLEMDR-----EKLGARA 189 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~gG-~~~g~LiviaaRP~mGKTa~alnia~~~a~~------g~~Vl~fSlEMs~-----~ql~~R~ 189 (266)
+.-|.||-.+||+++|| ..--...=|.|-|++|||-+...++.++-.- +..+.|+..|=+- .|+++|.
T Consensus 94 v~~ItTgs~~lD~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IAe~~ 173 (335)
T KOG1434 94 VGSITTGSSALDDILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIAERF 173 (335)
T ss_pred CCEEECCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCEEEEEEEEEECCHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 45463256777656248853102687707877670102358999765643218877428999258861458999999874
Q ss_pred HHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHC-------------CCEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9963022323478555017889989999999999999729-------------954747998898999999999999947
Q gi|254781149|r 190 LSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDF-------------PLIIDDRPSPGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 190 ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~-------------pl~IdD~~~~ti~~ira~aR~~k~k~~ 256 (266)
-..- ..-..+|-+.+ ..-++++++.+....+.+++- |+.+|..+.-.+++=.-+.-.|-.|..
T Consensus 174 ~~d~-d~~LdNI~y~R---a~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~FRvDy~grgeLseRqqkLn~ml~kl~ 249 (335)
T KOG1434 174 KVDP-DFTLDNILYFR---AYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALFRVDYDGRGELSERQQKLNQMLQKLN 249 (335)
T ss_pred CCCH-HHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHHCCCEEEEEEECEEHHEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8898-89887778877---7286999999999888874448579999800000302145664308899999999999999
Q ss_pred HHHHHHHH
Q ss_conf 99986421
Q gi|254781149|r 257 KMVQLYRL 264 (266)
Q Consensus 257 ~~~~~~~~ 264 (266)
++..-|.|
T Consensus 250 ~laeefnv 257 (335)
T KOG1434 250 KLAEEFNV 257 (335)
T ss_pred HHHHHCCE
T ss_conf 99875227
No 160
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.21 E-value=0.066 Score=33.49 Aligned_cols=123 Identities=18% Similarity=0.154 Sum_probs=65.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH--H------HCCCC-------------EEEEC---------CC
Q ss_conf 7777765530168368870687414889999999996--3------02232-------------36411---------67
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM--A------MSGHG-------------VAFFS---------LE 179 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~--a------~~g~~-------------Vl~fS---------lE 179 (266)
..|+++---+++|+.+-|.|..|.|||+|+-.++--. . ..|++ +.|.. ..
T Consensus 276 ~~l~~vsf~v~~GEi~gi~G~nGsGKsTLl~~L~Gl~~~~~~G~i~~~G~~i~~~~~~~~~~~~i~~v~qdr~~~~l~~~ 355 (513)
T PRK13549 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIRQGIAMVPEDRKRDGIVPV 355 (513)
T ss_pred EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 36523357886884899747988658999999838988897439999988768689999997177634510000254667
Q ss_pred CCHHH-HHHHHHHHHHC----------------CCCCCCCHH--HCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 53489-99999996302----------------232347855--501788998999999999999972995474799889
Q gi|254781149|r 180 MDREK-LGARALSNLLY----------------PSSSRIPYL--NLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPG 240 (266)
Q Consensus 180 Ms~~q-l~~R~ls~~t~----------------~~~s~I~~~--~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~t 240 (266)
|+-.+ +....+..... +..-.+... ...-+.|+..+.+++.=|..-+.+-++.|-|.|.--
T Consensus 356 ~sv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~LSGGq~QRv~iAraL~~~P~iLilDEPT~G 435 (513)
T PRK13549 356 MGVGKNITLAALDRFTGRGRIDDAAELKTILESIQRLKVKTSSPELAIARLSGGNQQKAILAKCLLLNPRILILDEPTRG 435 (513)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 84999998887764322232458999999999998648976664465023999999999999999719989999798668
Q ss_pred HH-----HHHHHHHHHH
Q ss_conf 89-----9999999999
Q gi|254781149|r 241 IM-----EFVHVANGLR 252 (266)
Q Consensus 241 i~-----~ira~aR~~k 252 (266)
++ +|..-.++++
T Consensus 436 LD~~~~~~i~~ll~~l~ 452 (513)
T PRK13549 436 IDVGAKYEIYKLINQLV 452 (513)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 161
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=95.19 E-value=0.028 Score=36.11 Aligned_cols=90 Identities=24% Similarity=0.313 Sum_probs=51.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHH----HHHHHC--CCCCCCC-HHHCCCCC--CCHH
Q ss_conf 88706874148899999999963022323-6411675348999999----996302--2323478-55501788--9989
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGV-AFFSLEMDREKLGARA----LSNLLY--PSSSRIP-YLNLIRGE--INQE 214 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~V-l~fSlEMs~~ql~~R~----ls~~t~--~~~s~I~-~~~l~~g~--l~~~ 214 (266)
+.|-|+||+|||++...++......|.+| .|++-|.-.. ..|. ++..++ ...++++ ....+.|+ .+-+
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~evre~--g~R~GF~iv~l~~g~~~~la~~~~~~~~~vGky~v~~~ 79 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREG--GRRIGFDIVDLASGERGPLARVGGVSGPRVGKYVVNLE 79 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCEECC--CCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEECHH
T ss_conf 8997899988999999999999867970748993021258--93789999990478267744406887754577166689
Q ss_pred HHHHH-HHHHHH-HHHCCCEEECC
Q ss_conf 99999-999999-97299547479
Q gi|254781149|r 215 QYRIS-QGICEK-LQDFPLIIDDR 236 (266)
Q Consensus 215 e~~~i-~~a~~~-l~~~pl~IdD~ 236 (266)
.++++ ..+..+ +.+..+.|-|.
T Consensus 80 ~fe~~~~~~L~~a~~~~dlivIDE 103 (168)
T pfam03266 80 EFEEIALPALRRALEEADLIIIDE 103 (168)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 999999999984066898999976
No 162
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.19 E-value=0.13 Score=31.57 Aligned_cols=124 Identities=15% Similarity=0.050 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCCCCEE-----------------------------
Q ss_conf 5111377777655301683688706874148899999999963-0223236-----------------------------
Q gi|254781149|r 125 IKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSGHGVA----------------------------- 174 (266)
Q Consensus 125 i~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g~~Vl----------------------------- 174 (266)
.|-|-+.|+++---+.+|+.+.|.|+.|.|||+++..++--.. .+| .|.
T Consensus 11 Y~~~~~aL~~vsl~i~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~G-~I~v~G~d~~~~~~~~~~r~~ig~vfQ~p~~q 89 (274)
T PRK13644 11 YPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKG-KVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQ 89 (274)
T ss_pred CCCCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCHHHHHHHHHEEEEEECCCCC
T ss_conf 59998466311779848999999999998099999999706858887-29999998787056799987317996582110
Q ss_pred EECC----------C---CCHHHHHHHHHHHHHCCCCCCCCHHHCC-CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 4116----------7---5348999999996302232347855501-788998999999999999972995474799889
Q gi|254781149|r 175 FFSL----------E---MDREKLGARALSNLLYPSSSRIPYLNLI-RGEINQEQYRISQGICEKLQDFPLIIDDRPSPG 240 (266)
Q Consensus 175 ~fSl----------E---Ms~~ql~~R~ls~~t~~~~s~I~~~~l~-~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~t 240 (266)
||+. | ++..++..|+-..+..+ ++....-+ -..||..+.+++.-|..-..+-++.|-|.|.-.
T Consensus 90 ~~~~tV~e~iafg~~~~~l~~~e~~~~v~~aL~~~---gl~~~~~~~p~~LSGGqkQRvaiA~aLa~~P~iLiLDEPTs~ 166 (274)
T PRK13644 90 FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEI---GLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSM 166 (274)
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 36151999996219766999999999999999985---968776289110997699999999999829999999798667
Q ss_pred HH-----HHHHHHHHHH
Q ss_conf 89-----9999999999
Q gi|254781149|r 241 IM-----EFVHVANGLR 252 (266)
Q Consensus 241 i~-----~ira~aR~~k 252 (266)
++ +|....++++
T Consensus 167 LD~~~~~~i~~~l~~L~ 183 (274)
T PRK13644 167 LDPDSGIAVLERIKKLH 183 (274)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 89999999999999998
No 163
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.15 E-value=0.14 Score=31.17 Aligned_cols=107 Identities=16% Similarity=0.086 Sum_probs=55.3
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEE--CCCCCHHHHHHHHHH--HHHCCCCCCCCHHH--CCC-CCCCHHH
Q ss_conf 88706874148899999999963022--323641--167534899999999--63022323478555--017-8899899
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSG--HGVAFF--SLEMDREKLGARALS--NLLYPSSSRIPYLN--LIR-GEINQEQ 215 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g--~~Vl~f--SlEMs~~ql~~R~ls--~~t~~~~s~I~~~~--l~~-g~l~~~e 215 (266)
+++-|.||.|||++|.-+|....-.+ ..++-+ |=+-+.+.+-.++-. ..... .+.++.- +-. ..|+.+.
T Consensus 40 lLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r~id~vr~~i~~~~~~~~~--~~~~~kiiiiDE~d~l~~~a 117 (318)
T PRK00440 40 LLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDERGIDVIRNKIKEFARTAPV--GGAPFKIIFLDEADNLTSDA 117 (318)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCC--CCCCEEEEEEECCCCCCHHH
T ss_conf 9888959988999999999997698643476895164566717899999999972677--89973899986855322556
Q ss_pred HHHHHHHHHHHHHCC--CEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999999999997299--54747998898999999999999
Q gi|254781149|r 216 YRISQGICEKLQDFP--LIIDDRPSPGIMEFVHVANGLRN 253 (266)
Q Consensus 216 ~~~i~~a~~~l~~~p--l~IdD~~~~ti~~ira~aR~~k~ 253 (266)
+..+...+++..+.. +.++..++--+.-|+|+|..++-
T Consensus 118 q~aL~~~mE~~~~~~~fil~~n~~~kii~~i~SRc~~i~f 157 (318)
T PRK00440 118 QQALRRTMEMYSQTTRFILSCNYSSKIIDPIQSRCAVFRF 157 (318)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHEEEEC
T ss_conf 7888764310566625886348833376155655101115
No 164
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.14 E-value=0.32 Score=28.72 Aligned_cols=87 Identities=14% Similarity=0.173 Sum_probs=55.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCH----HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 3688706874148899999999963022323641167534----899999999630223234785550178899899999
Q gi|254781149|r 143 ELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDR----EKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRI 218 (266)
Q Consensus 143 ~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~----~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~ 218 (266)
..|.+.|-+|+|||+.+--+|.....+|++|++.+..--+ +|+ |..+... ++|..... +..++..
T Consensus 76 ~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQL--k~~a~~l-----~v~~~~~~----~~~~~~~ 144 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL--QDYVKTI-----GFEVIAVR----DEAAMTR 144 (270)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH--HHHHHHH-----CCCEECCC----CHHHHHH
T ss_conf 18999888989889999999999986799089998388888899999--9999981-----99535458----8789999
Q ss_pred HHHHHHHHHHCCCEEECCCCCC
Q ss_conf 9999999972995474799889
Q gi|254781149|r 219 SQGICEKLQDFPLIIDDRPSPG 240 (266)
Q Consensus 219 i~~a~~~l~~~pl~IdD~~~~t 240 (266)
......+..+..+-|-||++-+
T Consensus 145 ~~~~~~~~~~~DvilIDTAGR~ 166 (270)
T PRK06731 145 ALTYFKEEARVDYILIDTAGKN 166 (270)
T ss_pred HHHHHHHHCCCCEEEEECCCCC
T ss_conf 9999999769999999799987
No 165
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=95.12 E-value=0.033 Score=35.61 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=28.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 6887068741488999999999630223236411675
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEM 180 (266)
+.|....-|+|||+++.|+|...+..|++|+.+-+..
T Consensus 4 Iai~s~KGGVGKTT~t~nLa~aLa~~G~rVLlID~Dp 40 (244)
T pfam06564 4 LALQGVRGGVGTTSLTAALGWALQQLGESVLVIDASP 40 (244)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9996699986199999999999997799589996898
No 166
>TIGR02655 circ_KaiC circadian clock protein KaiC; InterPro: IPR013503 The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of the KaiC domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. Kai proteins (KaiA and KaiC) appear to positively and negatively regulate kaiBC transcription which is consistent with a transcription/translation oscillatory (TTO) feedback model, believed to be at the core of all self-sustained circadian timers. However, the cyanobacterial circadian clock is able to function without de novo synthesis of clock gene mRNAs and the clock proteins, and the period is accurately determined without TTO feedback and the system is also temperature-compensated. It has been demonstrated that these three purified proteins form a temperature-compensated molecular oscillator in vitro that exhibits rhythmic phosphorylation and dephosphorylation of KaiC. A negative-stain electron microscopy study of Synechococcus elongatus and Thermosynechococcus elongatus BP-1 KaiAKaiC complexes in combination with site-directed mutagenesis reveals that KaiA binds exclusively to the CII half of the KaiC hexamer. The EM-based model of the KaiAKaiC complex reveals proteinprotein interactions at two sites: the known interaction of the flexible C-terminal KaiC peptide with KaiA, and a second postulated interaction between the apical region of KaiA and the ATP binding cleft on KaiC. This model brings KaiA mutation sites that alter clock period or abolish rhythmicity into contact with KaiC and suggests how KaiA might regulate KaiC phosphorylation . ; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0042752 regulation of circadian rhythm, 0045449 regulation of transcription.
Probab=95.11 E-value=0.053 Score=34.18 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 511137777765-530168368870687414889999999996302-232364116753489999999963022323478
Q gi|254781149|r 125 IKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMS-GHGVAFFSLEMDREKLGARALSNLLYPSSSRIP 202 (266)
Q Consensus 125 i~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~-g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~ 202 (266)
++|.+..+|++. ||+-=|.-.+|.|-.|.|||.|++++.++-... ..|.+|.++|-+..++..-..+ -+++
T Consensus 3 ~~t~ieGfdd~~~GGlP~Gr~tl~sGtsGtGkt~~~~~fl~~Gi~~fd~P~~fvtfee~P~di~~na~~-------fGW~ 75 (484)
T TIGR02655 3 LRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSLQFLYNGIVHFDEPGVFVTFEESPKDIIKNAAS-------FGWD 75 (484)
T ss_pred CCCCCCCCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH-------HCCH
T ss_conf 432103511220488343540366236764347777778887565407870599863785899977775-------0400
Q ss_pred HHHCCC-CCC------------------CHH-HHHHHHHHHHHHHHCCCEEECC
Q ss_conf 555017-889------------------989-9999999999997299547479
Q gi|254781149|r 203 YLNLIR-GEI------------------NQE-QYRISQGICEKLQDFPLIIDDR 236 (266)
Q Consensus 203 ~~~l~~-g~l------------------~~~-e~~~i~~a~~~l~~~pl~IdD~ 236 (266)
..++.. ++| +-. =.+++.-|+.+.+.-..-||.-
T Consensus 76 l~~l~~~~klfildasPdP~Gq~~~G~fdls~lier~~yai~ky~a~rv~ids~ 129 (484)
T TIGR02655 76 LQKLVDEGKLFILDASPDPEGQDVVGEFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred HHHHHHCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCEEEHHHH
T ss_conf 788851596799966889975514403107899999999987641000003466
No 167
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.11 E-value=0.095 Score=32.42 Aligned_cols=104 Identities=16% Similarity=0.083 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC
Q ss_conf 37777765530168368870687414889999999996302232364116753489999999963022323478555017
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIR 208 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~ 208 (266)
|..++++. -+.+|+.+.|-|..|.|||++.--++--.--....+-+-.. ..+-.| ..
T Consensus 13 ~~~l~~~~-~v~~GEiv~ilGpNGaGKSTllk~i~G~l~p~~G~i~~~g~------------------~~~~~p----q~ 69 (177)
T cd03222 13 FFLLVELG-VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------------TPVYKP----QY 69 (177)
T ss_pred EEEECCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCC------------------CEECCC----CC
T ss_conf 89865899-55899899998999999999999996886788994666686------------------122155----51
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHHHHHH
Q ss_conf 8899899999999999997299547479988989-----9999999999994
Q gi|254781149|r 209 GEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGLRNKH 255 (266)
Q Consensus 209 g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~k~k~ 255 (266)
-+|+..|..++.-|..-+.+.++.+-|.|.-.++ ++....++++++.
T Consensus 70 ~~LSGGqrQRv~iAral~~~p~lllLDEPts~LD~~~r~~i~~~ik~l~~~~ 121 (177)
T cd03222 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEG 121 (177)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 5079899999999999823999999748865389999999999999999965
No 168
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.11 E-value=0.33 Score=28.65 Aligned_cols=112 Identities=16% Similarity=0.097 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-HHCC----------------------------------CCE
Q ss_conf 37777765530168368870687414889999999996-3022----------------------------------323
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM-AMSG----------------------------------HGV 173 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~-a~~g----------------------------------~~V 173 (266)
+..||++---+.+|+.+.|-|..|.|||+++..++--. ...| +.|
T Consensus 39 ~~AL~~Is~~i~~Ge~vaIIG~nGsGKSTL~~~l~Gll~p~~G~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~v 118 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118 (320)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCE
T ss_conf 79861645588599899999499984999999997588899835998658714544563100250266777899975348
Q ss_pred E-EE---------------------CCCCCHHHHHHHHHHHHHCCCCCCCCHHHCC--CCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 6-41---------------------1675348999999996302232347855501--7889989999999999999729
Q gi|254781149|r 174 A-FF---------------------SLEMDREKLGARALSNLLYPSSSRIPYLNLI--RGEINQEQYRISQGICEKLQDF 229 (266)
Q Consensus 174 l-~f---------------------SlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~--~g~l~~~e~~~i~~a~~~l~~~ 229 (266)
. +| .+.++.++...|....+..+ +++...+. -..||-.+.+|+.-|..-..+-
T Consensus 119 g~VfQ~P~~~lf~~tV~~di~fg~~~~g~~~~e~~~r~~~~L~~v---gl~~~~~~r~p~~LSGGqkQRVaIA~aLa~~P 195 (320)
T PRK13631 119 SMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKM---GLDDSYLERSPFGLSGGQKRRVAIAGILAIQP 195 (320)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999607430316528999999889985999999999999999887---99746743782209999999999999972399
Q ss_pred CCEEECCCCCCHHH
Q ss_conf 95474799889899
Q gi|254781149|r 230 PLIIDDRPSPGIME 243 (266)
Q Consensus 230 pl~IdD~~~~ti~~ 243 (266)
.+.|-|.|.-.++-
T Consensus 196 ~iLilDEPTagLDp 209 (320)
T PRK13631 196 EILIFDEPTAGLDP 209 (320)
T ss_pred CEEEECCCCCCCCH
T ss_conf 99997587555998
No 169
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.17 Score=30.73 Aligned_cols=121 Identities=12% Similarity=0.015 Sum_probs=74.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCC--------------------C-EEEEC-----
Q ss_conf 7777655301683688706874148899999999963-0------223--------------------2-36411-----
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGH--------------------G-VAFFS----- 177 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~--------------------~-Vl~fS----- 177 (266)
.||.+.--+.+|+.+.|-|.-|.|||++.-.++--.- . .|+ | -.||+
T Consensus 25 ~L~~isl~i~~Ge~vaivG~nGsGKSTLlk~l~Gll~p~~G~I~v~G~~i~~~~~~~~~~~ig~VfQ~Pd~q~~~~tV~e 104 (273)
T PRK13632 25 ALKNVSFTINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIFGITISKENLKYLRKKIGIIFQNPDNQFIGITVED 104 (273)
T ss_pred EEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEEEECCCHHCCCCCHHH
T ss_conf 06642889849989999999998699999999738778887599999999968989987435699877102027751788
Q ss_pred --------CCCCHHHHHHHHHHHHHCCCCCCCCHHHCC-CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----H
Q ss_conf --------675348999999996302232347855501-78899899999999999997299547479988989-----9
Q gi|254781149|r 178 --------LEMDREKLGARALSNLLYPSSSRIPYLNLI-RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----E 243 (266)
Q Consensus 178 --------lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~-~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ 243 (266)
..++.+++-.|+-..+-.+ ++....-+ -..|+-.+.+++.-|..-+.+-++.|-|.|.-.++ +
T Consensus 105 ~iafgl~~~~~~~~~~~~~v~~~l~~~---gl~~~~~~~p~~LSGGqkQRvaiA~aLa~~P~iliLDEPTs~LD~~~~~~ 181 (273)
T PRK13632 105 DIAFGLENKKIPPKKMKDIIDDLAKKV---GMEDYLKKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 181 (273)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHC---CCHHHHHCCCHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf 888678667999999999999999986---98887747820099999999999999971999999807755699899999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254781149|r 244 FVHVANGLRNK 254 (266)
Q Consensus 244 ira~aR~~k~k 254 (266)
+....++++++
T Consensus 182 l~~~l~~l~~~ 192 (273)
T PRK13632 182 IKKIMVDLRKD 192 (273)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999984
No 170
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.09 E-value=0.22 Score=29.92 Aligned_cols=96 Identities=15% Similarity=0.035 Sum_probs=60.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 16836887068741488999999999630223236411675348999999996302232347855501788998999999
Q gi|254781149|r 140 QLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRIS 219 (266)
Q Consensus 140 ~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i 219 (266)
++|-.|-+-|-||.|||++|-.+....-..|.+|.++.-. ++-. ++... +.+... -.+-..++
T Consensus 5 ~kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD----~lR~-~~~~~------gfs~~~------R~~n~~r~ 67 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD----ELRE-IFGHS------GYDKES------RIEMALKR 67 (176)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCH----HHHH-HHCCC------CCCHHH------HHHHHHHH
T ss_conf 8867999789999989999999999999759977998868----9998-73658------989999------99999999
Q ss_pred HHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 999999972995474799889899999999999
Q gi|254781149|r 220 QGICEKLQDFPLIIDDRPSPGIMEFVHVANGLR 252 (266)
Q Consensus 220 ~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k 252 (266)
...+..+.+..+.+--+.---..++|..+|..-
T Consensus 68 ~~lak~l~~~g~~vIvs~isp~~~~R~~~R~~~ 100 (176)
T PRK05541 68 AKLAAFLADQGMIVIVTTISMFNEIYAYNRKHL 100 (176)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHC
T ss_conf 999999864698036752279899999999748
No 171
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.08 E-value=0.22 Score=29.92 Aligned_cols=120 Identities=15% Similarity=0.130 Sum_probs=75.7
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC------------CEE-EE-C-----------
Q ss_conf 777776553016836887068741488999999999630-------223------------236-41-1-----------
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH------------GVA-FF-S----------- 177 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~------------~Vl-~f-S----------- 177 (266)
+.||++.--+.+|+.+.|-|+.|.|||+++-.++--.-- .|. .+. +| .
T Consensus 18 ~aL~~vsl~i~~GE~vaivG~nGsGKSTL~~~l~Gll~p~~G~I~i~G~~i~~~~~~~lr~~ig~VfQ~p~~~~~~~tV~ 97 (276)
T PRK13650 18 YTLDDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGSIIIDGDLLTEENVWEIRHKIGMVFQNPDNQFVGATVE 97 (276)
T ss_pred EEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCEEEEEECCCHHCCCCCHH
T ss_conf 78787587998998999999999879999999973889886089999999986776887641469976720105636399
Q ss_pred ---------CCCCHHHHHHHHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH---
Q ss_conf ---------675348999999996302232347855501---78899899999999999997299547479988989---
Q gi|254781149|r 178 ---------LEMDREKLGARALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM--- 242 (266)
Q Consensus 178 ---------lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~--- 242 (266)
.-++.+++..|+--.+.-+ ....++ -..|+-.+..++.-|..-..+-++.|-|.|...++
T Consensus 98 e~i~fgl~~~g~~~~e~~~rv~~~l~~~-----gl~~~~~r~p~~LSGGQrQRvaIA~aLa~~P~lLilDEPTs~LD~~~ 172 (276)
T PRK13650 98 DDVAFGLENKGIPHEEMKERVNEALELV-----GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 172 (276)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHC-----CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 9998799877999999999999999877-----99245538903389999999999999973999999838866589999
Q ss_pred --HHHHHHHHHHHH
Q ss_conf --999999999999
Q gi|254781149|r 243 --EFVHVANGLRNK 254 (266)
Q Consensus 243 --~ira~aR~~k~k 254 (266)
+|....++++++
T Consensus 173 ~~~i~~~l~~l~~~ 186 (276)
T PRK13650 173 RLELIKTIKNIRDD 186 (276)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999984
No 172
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.04 E-value=0.2 Score=30.20 Aligned_cols=105 Identities=17% Similarity=0.290 Sum_probs=57.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHH-HH
Q ss_conf 68368870687414889999999996302232364116753489999999963022323478555017889989999-99
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYR-IS 219 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~-~i 219 (266)
++..+.|-|.+|+|||-+...++..+...++.|.|.+++.... ...-++-.+...+.=-|+.=+.-.| +++|+ .+
T Consensus 44 ~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~-~~~~~l~~l~~~dll~iDDi~~i~g---~~~~ee~l 119 (235)
T PRK08084 44 HSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAW-FVPEVLEGMEQLSLVCIDNIECIAG---DELWEMAI 119 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHH-HHHHHHHHHHHCCEEEEECHHHHCC---CHHHHHHH
T ss_conf 9876999899998889999999999970798579987798665-1799998764189899827455469---97899999
Q ss_pred HHHHHHHHH---CCCEEE-CCC-C-C--CHHHHHHHHH
Q ss_conf 999999972---995474-799-8-8--9899999999
Q gi|254781149|r 220 QGICEKLQD---FPLIID-DRP-S-P--GIMEFVHVAN 249 (266)
Q Consensus 220 ~~a~~~l~~---~pl~Id-D~~-~-~--ti~~ira~aR 249 (266)
-...+++.+ ..|.+- |.| . + .+.+++|+..
T Consensus 120 F~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~DL~SRl~ 157 (235)
T PRK08084 120 FDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLD 157 (235)
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHH
T ss_conf 99999999848966999679882430231288999995
No 173
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.03 E-value=0.13 Score=31.38 Aligned_cols=126 Identities=17% Similarity=0.036 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-------CC-----------CEEEE------CCCCCHHH
Q ss_conf 37777765530168368870687414889999999996302-------23-----------23641------16753489
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMS-------GH-----------GVAFF------SLEMDREK 184 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~-------g~-----------~Vl~f------SlEMs~~q 184 (266)
...||.+-.-+.+|+++.+-|+.|.|||++.--++--.--. |. .+.|. --.|+..|
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~Gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lTv~e 97 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRE 97 (293)
T ss_pred CEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHCEEEEEECCCCCCCCCCHHH
T ss_conf 78886049998289599998999998999999996797788649999586275126765052999947877771475999
Q ss_pred HHHHHHHHHHCCC-------------CCCCCHH-HCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCC-----CHHHHH
Q ss_conf 9999999630223-------------2347855-50178899899999999999997299547479988-----989999
Q gi|254781149|r 185 LGARALSNLLYPS-------------SSRIPYL-NLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSP-----GIMEFV 245 (266)
Q Consensus 185 l~~R~ls~~t~~~-------------~s~I~~~-~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~-----ti~~ir 245 (266)
...=+.+ +-+.. .-+++.. +-+-+.++..+.+|+.=|..-+.+-+++|-|.|.- +..+++
T Consensus 98 ~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~ 176 (293)
T COG1131 98 NLEFFAR-LYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176 (293)
T ss_pred HHHHHHH-HHCCCHHHHHHHHHHHHHHCCCCCHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 9999999-849971667999999999869960328810237988999999999996699999996997787999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999994
Q gi|254781149|r 246 HVANGLRNKH 255 (266)
Q Consensus 246 a~aR~~k~k~ 255 (266)
...|.++++.
T Consensus 177 ~~l~~l~~~g 186 (293)
T COG1131 177 ELLRELAKEG 186 (293)
T ss_pred HHHHHHHHCC
T ss_conf 9999999679
No 174
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.02 E-value=0.16 Score=30.81 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-------HCCC----------CEE-EE-C-----------
Q ss_conf 1377777655301683688706874148899999999963-------0223----------236-41-1-----------
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-------MSGH----------GVA-FF-S----------- 177 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-------~~g~----------~Vl-~f-S----------- 177 (266)
+...||++.--+.+|+++.|-|..|.|||++.--++--.- ..|+ .+. +| +
T Consensus 15 ~~~al~~vsl~i~~Ge~~~llGpsG~GKSTllr~i~Gl~~p~~G~I~i~g~~v~~~~~~~r~ig~vfQ~~~L~p~ltV~e 94 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE 94 (369)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 99998643889879989999999973699999999779999954999999999879977878699940785478989999
Q ss_pred -----C---CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HH
Q ss_conf -----6---7534899999999630223234785550178899899999999999997299547479988989-----99
Q gi|254781149|r 178 -----L---EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EF 244 (266)
Q Consensus 178 -----l---EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~i 244 (266)
+ -++.+++..|+...+..+....+ .+-+-++|+..+.+|+.-|-.-+.+-++.+-|.|--.++ ++
T Consensus 95 Ni~~~l~~~~~~~~e~~~rv~~~l~~~~l~~~--~~r~p~~LSGGq~QRvaiARAL~~~P~illlDEP~s~LD~~~r~~~ 172 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHL--LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172 (369)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHH--HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHEEHH
T ss_conf 99778876389889999999999986374535--5588746694277999999886259985884366678886665247
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999994
Q gi|254781149|r 245 VHVANGLRNKH 255 (266)
Q Consensus 245 ra~aR~~k~k~ 255 (266)
+...++++++.
T Consensus 173 ~~~l~~l~~~~ 183 (369)
T PRK11000 173 RIEISRLHKRL 183 (369)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999986
No 175
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=95.02 E-value=0.12 Score=31.80 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHH---------HHHC-CCCEEEECCCCCHHHHHHHHHH
Q ss_conf 78511137777765-53016836887068741488999999999---------6302-2323641167534899999999
Q gi|254781149|r 123 PDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALH---------MAMS-GHGVAFFSLEMDREKLGARALS 191 (266)
Q Consensus 123 ~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~---------~a~~-g~~Vl~fSlEMs~~ql~~R~ls 191 (266)
.-+.=||..+-+.. .-|.. .++||+|++|+|||-+...+... .|.+ |-.-.-...+.|...-++=.++
T Consensus 118 ~~l~GGYKayR~~v~~~l~~-~~~vl~G~TG~GKT~lL~~L~~~G~~viDLEglA~HRGS~FG~~~~~QPsQk~FE~~L~ 196 (333)
T PRK11784 118 PLLEGGYKAYRRFVIDTLEE-PLVVLGGMTGSGKTRLLQALANAGAQVLDLEGLANHRGSSFGRLGGPQPSQKDFENLLA 196 (333)
T ss_pred CCCCCCHHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCCEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 60376089999999998546-85998678887789999999975997433898863256423588999987899999999
No 176
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.01 E-value=0.031 Score=35.82 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H-CCCCEEEEC---CCCCHHHHHHHHHHHHHC--CCCCCC
Q ss_conf 377777655301683688706874148899999999963-0-223236411---675348999999996302--232347
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M-SGHGVAFFS---LEMDREKLGARALSNLLY--PSSSRI 201 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~-~g~~Vl~fS---lEMs~~ql~~R~ls~~t~--~~~s~I 201 (266)
...||++.--+.+|+.+.|-|+-|.|||++.-.++-... + ..-.|.|.. ..|+..+-..+-+..... .....+
T Consensus 13 ~~vL~~vsl~v~~Gei~~iiGpnGaGKSTLl~~i~G~~~~~~~~G~I~~~g~~i~~~~~~~~~~~gi~~~~q~~~~~~~~ 92 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGV 92 (200)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCHHHHHHCCEEEECCCHHHCCCC
T ss_conf 99885505688799899999689999999999970777778520079999999886999999976948963676870798
Q ss_pred CHHHC-C--CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 85550-1--78899899999999999997299547479988989
Q gi|254781149|r 202 PYLNL-I--RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 202 ~~~~l-~--~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
....+ + ...|+..+.+++.=|..-+.+.++.|-|.|.-.++
T Consensus 93 ~~~~~l~~~~~~LSGGekqrv~iaral~~~P~lllLDEPtsgLD 136 (200)
T cd03217 93 KNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLD 136 (200)
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 49999976463679999999999999960999999969622699
No 177
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=95.01 E-value=0.033 Score=35.62 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 11377777655301683688706874148899999999963022
Q gi|254781149|r 127 WGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSG 170 (266)
Q Consensus 127 TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g 170 (266)
||++.+|-++- +.+|+=+.|=|.||+|||.++.+++.|...+.
T Consensus 1 TGi~~ID~l~p-ig~GQr~~I~g~~g~GKt~l~~~i~~~~~~~~ 43 (213)
T pfam00006 1 TGIRAIDLLLP-IGKGQRIGIFGGSGTGKTVLLGMIARNAKADV 43 (213)
T ss_pred CCCCEEECCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98400020166-45788877878999988999999998566189
No 178
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.99 E-value=0.13 Score=31.39 Aligned_cols=93 Identities=23% Similarity=0.230 Sum_probs=66.5
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC--HHHHHHHHHHHHHC-------------C
Q ss_conf 77765530168368870687414889999999996302232364116753--48999999996302-------------2
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMD--REKLGARALSNLLY-------------P 196 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs--~~ql~~R~ls~~t~-------------~ 196 (266)
+|.+.--+.+|-+.-+-|.-|-|||++..-+++=.......|.+=.+|++ ..+-..+-+|.+.. +
T Consensus 17 l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv 96 (252)
T COG4604 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLV 96 (252)
T ss_pred ECCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCHHHEEEEHHHHH
T ss_conf 53614541588636888899864888999999852667863898116625687699999988987632021036799864
Q ss_pred CCCCCCHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3234785550178899899999999999997
Q gi|254781149|r 197 SSSRIPYLNLIRGEINQEQYRISQGICEKLQ 227 (266)
Q Consensus 197 ~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~ 227 (266)
+.++.|+.+ |+++.++|..+..|.+-+.
T Consensus 97 ~FGRfPYSq---GRlt~eD~~~I~~aieyl~ 124 (252)
T COG4604 97 GFGRFPYSQ---GRLTKEDRRIINEAIEYLH 124 (252)
T ss_pred HCCCCCCCC---CCCCHHHHHHHHHHHHHHC
T ss_conf 237876557---8877577999999987743
No 179
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=94.99 E-value=0.096 Score=32.36 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=66.8
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCCC-------------------EEEEC------CC
Q ss_conf 777655301683688706874148899999999963-0------2232-------------------36411------67
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGHG-------------------VAFFS------LE 179 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~~-------------------Vl~fS------lE 179 (266)
|+++.--+.||+.+-|-|+.|.|||+++-=++.--- . .|.+ +.+|+ .+
T Consensus 339 L~~isl~i~~Ge~vaiVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~~ti~~n~~ 418 (547)
T PRK10522 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDVHLFDQLLGPEGK 418 (547)
T ss_pred CCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCCCHHHHHHHHCCC
T ss_conf 07804798599889998999997799999982896699986989999999689999985416985774045777664342
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 5348999999996302232347855501788998999999999999972995474799889899
Q gi|254781149|r 180 MDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 180 Ms~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
...++.....+........-..+......-+|+..|..|+.=|-.-+++.||.|-|.|.-.++.
T Consensus 419 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~ 482 (547)
T PRK10522 419 PANPALVEKWLEQLKMAHKLELEDGRITNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDP 482 (547)
T ss_pred CCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 3119999999998588131045668877896299999999999999749999999685557899
No 180
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.97 E-value=0.36 Score=28.40 Aligned_cols=128 Identities=15% Similarity=0.161 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-HHCC-----------------------CCE-EEEC--
Q ss_conf 511137777765530168368870687414889999999996-3022-----------------------323-6411--
Q gi|254781149|r 125 IKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM-AMSG-----------------------HGV-AFFS-- 177 (266)
Q Consensus 125 i~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~-a~~g-----------------------~~V-l~fS-- 177 (266)
-|..++.||++---+.+|+.+.|-|..|.|||+++..++--. ..+| +.| .+|.
T Consensus 20 ~~~~~~AL~~vsl~i~~Ge~~aIiG~nGsGKSTL~~~l~Gll~p~~G~v~~~~~~i~~~~~~~~~~~~~r~~vG~vfQ~P 99 (289)
T PRK13645 20 TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFP 99 (289)
T ss_pred CCCCCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCHHHHHHHHCCEEEEEECC
T ss_conf 98836586532889889989999999995799999999659889998599999983476531557899763679996677
Q ss_pred -------------------CCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf -------------------6753489999999963022323478555017--8899899999999999997299547479
Q gi|254781149|r 178 -------------------LEMDREKLGARALSNLLYPSSSRIPYLNLIR--GEINQEQYRISQGICEKLQDFPLIIDDR 236 (266)
Q Consensus 178 -------------------lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~--g~l~~~e~~~i~~a~~~l~~~pl~IdD~ 236 (266)
+-++.+++..|+-..+-- -+++...+.+ ..|+-.+.+++.-|.--..+-++.|-|.
T Consensus 100 ~~qlf~~tV~~~iafg~~n~g~~~~e~~~rv~~~l~~---v~L~~~~~~~~p~~LSGGqkqRVaiA~aLa~~P~iLilDE 176 (289)
T PRK13645 100 EYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKL---VQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDE 176 (289)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 6462663799999867987699999999999999987---6998667418901099999999999999963999999958
Q ss_pred CCCCHH-----HHHHHHHHHHHHH
Q ss_conf 988989-----9999999999994
Q gi|254781149|r 237 PSPGIM-----EFVHVANGLRNKH 255 (266)
Q Consensus 237 ~~~ti~-----~ira~aR~~k~k~ 255 (266)
|.-.++ +|..-.+++++++
T Consensus 177 PTagLDp~~~~~i~~ll~~L~~~~ 200 (289)
T PRK13645 177 PTGGLDPKGEEDFINLFERLNKEY 200 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 876489899999999999999956
No 181
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=94.95 E-value=0.027 Score=36.22 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=36.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHH
Q ss_conf 68870687414889999999996302-2323641167534899999
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMS-GHGVAFFSLEMDREKLGAR 188 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~-g~~Vl~fSlEMs~~ql~~R 188 (266)
+.|-.+.||.|||+++.|+|...|.. |++|+++-..+-.-.+...
T Consensus 38 i~VTS~~pgeGKTtva~nLA~~lA~~~~~~VLLVDaDlr~p~l~~~ 83 (207)
T TIGR03018 38 IMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRT 83 (207)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHH
T ss_conf 9997899999889999999999997249859999535789971001
No 182
>PRK13695 putative NTPase; Provisional
Probab=94.93 E-value=0.033 Score=35.58 Aligned_cols=38 Identities=37% Similarity=0.456 Sum_probs=31.1
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCE-EEECCCCCH
Q ss_conf 88706874148899999999963022323-641167534
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGV-AFFSLEMDR 182 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~V-l~fSlEMs~ 182 (266)
|.|-|+||+|||++...++......|.+| .|++-|.-.
T Consensus 6 I~iTG~PGvGKTTli~Kv~~~L~~~g~~v~GF~T~Evre 44 (174)
T PRK13695 6 IGITGMPGVGKTTLVLKIAELLAREGYKVGGFITEEVRE 44 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEEC
T ss_conf 998789998899999999999863696174699525603
No 183
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=94.93 E-value=0.22 Score=29.87 Aligned_cols=123 Identities=14% Similarity=0.076 Sum_probs=65.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C------CCCE------------------------EEECCC
Q ss_conf 77776553016836887068741488999999999630-2------2323------------------------641167
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-S------GHGV------------------------AFFSLE 179 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~------g~~V------------------------l~fSlE 179 (266)
.++++.--+++|+.+-|.|..|.|||+++-.++--.-. . |+++ +|-.+.
T Consensus 263 ~l~~vsf~v~~GEivgl~G~nGsGKsTL~~~l~Gl~~~~~G~I~~~G~~~~~~~~~~~~~~~~~~v~~~r~~~~~~~~~~ 342 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLD 342 (491)
T ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCEEEEHHHHHCCCCCCCC
T ss_conf 42026799968968997789999788999998198678777799999999878989998626525203332044003575
Q ss_pred CCHHHHHHH---HHHHHHCCC-------------CCCCCHHHC--CCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH
Q ss_conf 534899999---999630223-------------234785550--17889989999999999999729954747998898
Q gi|254781149|r 180 MDREKLGAR---ALSNLLYPS-------------SSRIPYLNL--IRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI 241 (266)
Q Consensus 180 Ms~~ql~~R---~ls~~t~~~-------------~s~I~~~~l--~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti 241 (266)
...+.+... ......... .-++..... .-+.|+-.+..++.=|.--+.+-++.|.|.|.--+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~LSGGq~QRv~iAraL~~~p~iLilDEPTsGL 422 (491)
T PRK10982 343 IGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGI 422 (491)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 88888998899886551433568999999999997166560233671449999999999999998499889997875579
Q ss_pred H-----HHHHHHHHHHH
Q ss_conf 9-----99999999999
Q gi|254781149|r 242 M-----EFVHVANGLRN 253 (266)
Q Consensus 242 ~-----~ira~aR~~k~ 253 (266)
+ +|..-.|++++
T Consensus 423 D~~~~~~i~~ll~~l~~ 439 (491)
T PRK10982 423 DVGAKFEIYQLIAELAK 439 (491)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 99999999999999996
No 184
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.93 E-value=0.21 Score=29.94 Aligned_cols=113 Identities=17% Similarity=0.053 Sum_probs=67.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCCC-----------EEEE------CCCCCHHHHH
Q ss_conf 7777655301683688706874148899999999963-0------2232-----------3641------1675348999
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGHG-----------VAFF------SLEMDREKLG 186 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~~-----------Vl~f------SlEMs~~ql~ 186 (266)
-|+++.--+.+|+.+.|-|+-|.|||++.--++--.. . .|++ +.|+ --+|+..|-.
T Consensus 16 vl~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~ltv~enl 95 (204)
T PRK13538 16 LFEGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENL 95 (204)
T ss_pred EEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHEEEECCCCCCCCCCCHHHHH
T ss_conf 98051779879989999999998599999999768888873799999997648888884478745424456558299999
Q ss_pred HHHHHHHHCCC---------CCCCC-HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 99999630223---------23478-55501788998999999999999972995474799889899
Q gi|254781149|r 187 ARALSNLLYPS---------SSRIP-YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 187 ~R~ls~~t~~~---------~s~I~-~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
.-......... .-++. ..+..-+.|+..+..++.=|..-+.+.+++|-|.|.-.++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~ 162 (204)
T PRK13538 96 RFYQRLHGPADDDAIWEALAQVGLAGFEDVPARQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK 162 (204)
T ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 9999855996389999999986991133288224899999999999999609998999788657899
No 185
>PRK04195 replication factor C large subunit; Provisional
Probab=94.93 E-value=0.37 Score=28.32 Aligned_cols=105 Identities=21% Similarity=0.232 Sum_probs=48.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEE--CCCCCHHHHHHHHHHHHHCCCCCCCCH--HHCC-----CCCCC-
Q ss_conf 3688706874148899999999963022323641--167534899999999630223234785--5501-----78899-
Q gi|254781149|r 143 ELILIGARPSMGKTTFALSTALHMAMSGHGVAFF--SLEMDREKLGARALSNLLYPSSSRIPY--LNLI-----RGEIN- 212 (266)
Q Consensus 143 ~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~f--SlEMs~~ql~~R~ls~~t~~~~s~I~~--~~l~-----~g~l~- 212 (266)
..+++.|.||+|||+.|.-+|... |..|+=+ |=+=+. +...+++...+. ...+.. .++- .| ++
T Consensus 41 k~lLL~GPpGvGKTT~a~~lAk~~---g~~viElNASD~R~~-~~I~~~i~~~~~--~~sl~~~~~KlIIlDEvD~-l~~ 113 (403)
T PRK04195 41 KALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTK-DVIERVAGEAST--SGSLFGAKRKLILLDEVDG-IHG 113 (403)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCCCCCH-HHHHHHHHHHHH--CCCCCCCCCEEEEEECCCC-CCC
T ss_conf 469988939987999999999984---998599771011478-999999998760--6887788734999634344-572
Q ss_pred HHHHHHHHHHHHHHHHC--CC-EEE-CCCCCCHHHHHHHHHHHHHH
Q ss_conf 89999999999999729--95-474-79988989999999999999
Q gi|254781149|r 213 QEQYRISQGICEKLQDF--PL-IID-DRPSPGIMEFVHVANGLRNK 254 (266)
Q Consensus 213 ~~e~~~i~~a~~~l~~~--pl-~Id-D~~~~ti~~ira~aR~~k~k 254 (266)
..|..-+....+-+.+. |+ .|+ |.-+..+..|+++|..++-+
T Consensus 114 ~~d~gg~~al~~~ik~s~~PiIli~Nd~~~~~~~~lrs~c~~i~F~ 159 (403)
T PRK04195 114 NADRGGVRAILEIIKKAKNPIILTANDPYDPSLRPLRNACLMIEFK 159 (403)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCC
T ss_conf 4447999999999854887089982684556717799766122179
No 186
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.92 E-value=0.37 Score=28.30 Aligned_cols=113 Identities=15% Similarity=0.167 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC----------------------CCE-EEEC----
Q ss_conf 111377777655301683688706874148899999999963-022----------------------323-6411----
Q gi|254781149|r 126 KWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG----------------------HGV-AFFS---- 177 (266)
Q Consensus 126 ~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g----------------------~~V-l~fS---- 177 (266)
|-+-+.|+++.--+.+|+.+.|-|..|.|||+++..++-=.- .+| ..| .+|.
T Consensus 4 P~e~~AL~~Vsl~i~~Ge~vaiiG~sGsGKSTLl~~l~GLl~P~~G~i~~~g~~i~~~~~~~~~~~lr~~vG~VfQ~P~~ 83 (276)
T PRK13634 4 PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLKPTKGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 83 (276)
T ss_pred CCCCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCHHHHHHHHHCEEEEEECCCH
T ss_conf 99766651447799899899999999969999999997499988749999999886888666689987326899987620
Q ss_pred -----------------CCCCHHHHHHHHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf -----------------675348999999996302232347855501---788998999999999999972995474799
Q gi|254781149|r 178 -----------------LEMDREKLGARALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRP 237 (266)
Q Consensus 178 -----------------lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~ 237 (266)
+-++.+++-.|....+.. -+++. +++ -..|+-.+.+++.-|.--+.+-.+.|-|.|
T Consensus 84 ql~~~tV~e~iafg~~~~g~~~~e~~~rv~~~L~~---vgL~~-~~~~r~p~~LSGGqkQRVaIA~aLa~~P~iLllDEP 159 (276)
T PRK13634 84 QLFEETVEKDICFGPMNFGVSEEEAKQKAKEMIEL---VGLPE-ELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEP 159 (276)
T ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCH-HHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 01551599999999998699999999999999997---69987-786189001899999999999999729998997698
Q ss_pred CCCHH
Q ss_conf 88989
Q gi|254781149|r 238 SPGIM 242 (266)
Q Consensus 238 ~~ti~ 242 (266)
.-.++
T Consensus 160 Ts~LD 164 (276)
T PRK13634 160 TAGLD 164 (276)
T ss_pred CCCCC
T ss_conf 54279
No 187
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=94.90 E-value=0.25 Score=29.44 Aligned_cols=111 Identities=13% Similarity=0.121 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCCC---------------E-EEE-C-------
Q ss_conf 3777776553016836887068741488999999999630-------2232---------------3-641-1-------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGHG---------------V-AFF-S------- 177 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~~---------------V-l~f-S------- 177 (266)
...+|++---+.+|+.+-|.|-.|.|||+++.-++.-..- .|.. + ++| +
T Consensus 28 v~Av~~Vsl~i~~GE~lgiVGeSGsGKSTL~~~l~gl~~p~~G~I~~~G~dl~~~~~~~~~~~r~~i~~VfQ~p~~sLnP 107 (327)
T PRK11308 28 VKALDGVSFNLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRRKVQIVFQNPYGSLNP 107 (327)
T ss_pred EEEECCEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHCCEEEEEECCHHHCCH
T ss_conf 88850606798899999999998319999999995699988637998999557799999999755779998686343380
Q ss_pred ---------------CCCCHHHHHHHHHHHHHCCCCCCCCHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf ---------------675348999999996302232347855501--788998999999999999972995474799889
Q gi|254781149|r 178 ---------------LEMDREKLGARALSNLLYPSSSRIPYLNLI--RGEINQEQYRISQGICEKLQDFPLIIDDRPSPG 240 (266)
Q Consensus 178 ---------------lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~--~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~t 240 (266)
..++..+...|....+..+ +++...+. -++|+..+.+++.-|..-+.+-.+-|-|.|.-.
T Consensus 108 ~~~v~~~l~e~l~~~~~~~~~~~~~~~~~~L~~v---gL~~~~~~ryP~eLSGGq~QRv~IArAL~~~P~lLi~DEPTsa 184 (327)
T PRK11308 108 RKKVGQILEEPLLINTSLSAAERREKALAMMAKV---GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSA 184 (327)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC---CCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 3424343357788614899999999999999870---4566566457644799999999999998428989998478654
Q ss_pred HH
Q ss_conf 89
Q gi|254781149|r 241 IM 242 (266)
Q Consensus 241 i~ 242 (266)
++
T Consensus 185 LD 186 (327)
T PRK11308 185 LD 186 (327)
T ss_pred CC
T ss_conf 69
No 188
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.90 E-value=0.2 Score=30.09 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCCCE--------------E-EEC---------
Q ss_conf 3777776553016836887068741488999999999630-------22323--------------6-411---------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGHGV--------------A-FFS--------- 177 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~~V--------------l-~fS--------- 177 (266)
.+.|+++.--+.+|+.+.|-|.-|.|||++.-.++--.-- .|+++ . +|.
T Consensus 14 ~~vL~~vsl~i~~Gei~~liGpNGaGKSTLlk~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~r~~i~~vfq~p~~~~~~~ 93 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT 93 (271)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCCCHHHHHHCEEEEEECCHHHHHHH
T ss_conf 98896418798389799999999980999999996688888607999999998553237998725389930722433475
Q ss_pred ------------CCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC---CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH-
Q ss_conf ------------6753489999999963022323478555017---889989999999999999729954747998898-
Q gi|254781149|r 178 ------------LEMDREKLGARALSNLLYPSSSRIPYLNLIR---GEINQEQYRISQGICEKLQDFPLIIDDRPSPGI- 241 (266)
Q Consensus 178 ------------lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~---g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti- 241 (266)
+-++..++..|+-..+. .+....+++ ..|+..+.+++.-|..-+.+.++.|-|.|.-.+
T Consensus 94 ~v~~~~~~~l~~~g~~~~~~~~rv~~~l~-----~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~P~lLlLDEPtagLD 168 (271)
T PRK13638 94 DIDSDIAFSLRNLGVPEAEITRRVDEALT-----LVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168 (271)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHH-----HCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 79999988998869998999999999997-----5394222308935599999999999999965999899838754589
Q ss_pred ----HHHHHHHHHHHHH
Q ss_conf ----9999999999999
Q gi|254781149|r 242 ----MEFVHVANGLRNK 254 (266)
Q Consensus 242 ----~~ira~aR~~k~k 254 (266)
.+|....|+++.+
T Consensus 169 ~~~~~~i~~ll~~l~~~ 185 (271)
T PRK13638 169 PAGRTQMIAIIRRIVAQ 185 (271)
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999978
No 189
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.89 E-value=0.25 Score=29.47 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=53.2
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCH----H
Q ss_conf 016836887068741488999999999630223236411675348999999996302232347855501788998----9
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQ----E 214 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~----~ 214 (266)
+|+|-++-+-|.||.|||++|-.+....-..|.++.++. .+++-. .++. .. .++. +
T Consensus 1 ~~kg~viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LD----GD~lR~-~l~~-------~l--------gfs~~dR~~ 60 (175)
T PRK00889 1 MQRGVTVWFTGLSGAGKTTISHALAEKLRARGYPVEVLD----GDIVRT-NLSK-------GL--------GFSKEDRDT 60 (175)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC----CHHHHH-HHCC-------CC--------CCCHHHHHH
T ss_conf 998889998898999999999999999998699679977----688887-5367-------88--------989899999
Q ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999999999997299547479988989999999999
Q gi|254781149|r 215 QYRISQGICEKLQDFPLIIDDRPSPGIMEFVHVANGL 251 (266)
Q Consensus 215 e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~ 251 (266)
...++...+..+.+..+.+--+.---..++|..+|..
T Consensus 61 n~~r~~~la~~l~~~g~~vIvs~isp~~~~R~~~r~~ 97 (175)
T PRK00889 61 NIRRIGFVAHLLTRHGVIVLVSAISPYRETREEVRGT 97 (175)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 9999999999998189868885047999999999985
No 190
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.88 E-value=0.3 Score=28.93 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 36887068741488999999999630
Q gi|254781149|r 143 ELILIGARPSMGKTTFALSTALHMAM 168 (266)
Q Consensus 143 ~LiviaaRP~mGKTa~alnia~~~a~ 168 (266)
+-|++.|.+|+|||+||..+|....-
T Consensus 46 HA~Lf~GP~GiGKaTlA~~~A~~Ll~ 71 (352)
T PRK09112 46 HALLFEGPEGIGKATLAFHLANHILS 71 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 24653589980899999999999866
No 191
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.85 E-value=0.17 Score=30.68 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC---------------------CCEE-EE------
Q ss_conf 111377777655301683688706874148899999999963-022---------------------3236-41------
Q gi|254781149|r 126 KWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG---------------------HGVA-FF------ 176 (266)
Q Consensus 126 ~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g---------------------~~Vl-~f------ 176 (266)
+.|...||++---+.+|+++.|-|+.|.|||++.--++--.. .+| ..|. +|
T Consensus 11 ~~~~~aL~~vsl~i~~Ge~v~i~GpSGsGKSTLl~~i~gl~~p~sG~i~i~g~~~~~~~~~~~~~~Rr~iG~VfQ~~~L~ 90 (214)
T cd03292 11 PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred CCCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCEEEEEECCCCC
T ss_conf 98989982217798599899999799953999999996298988649999999989899778999866749990187647
Q ss_pred -C-------------CCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC---CCCCHHHHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf -1-------------6753489999999963022323478555017---8899899999999999997299547479988
Q gi|254781149|r 177 -S-------------LEMDREKLGARALSNLLYPSSSRIPYLNLIR---GEINQEQYRISQGICEKLQDFPLIIDDRPSP 239 (266)
Q Consensus 177 -S-------------lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~---g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ 239 (266)
+ .-++.++...|....+..+. ..+... .+|+-.|.+|+.-|-.-+.+-++-+-|.|.-
T Consensus 91 ~~ltV~eNv~~~l~~~~~~~~~~~~rv~~~L~~vg-----L~~~~~~~p~~LSGGqkQRvaIARALv~~P~ill~DEPT~ 165 (214)
T cd03292 91 PDRNVYENVAFALEVTGVPPREIRKRVPAALELVG-----LSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTG 165 (214)
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-----CHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99979999999999849999999999999998779-----9657549942488899999999999972999999839878
Q ss_pred CHHHH
Q ss_conf 98999
Q gi|254781149|r 240 GIMEF 244 (266)
Q Consensus 240 ti~~i 244 (266)
+++--
T Consensus 166 ~LD~~ 170 (214)
T cd03292 166 NLDPD 170 (214)
T ss_pred CCCHH
T ss_conf 77989
No 192
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=94.85 E-value=0.076 Score=33.10 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=28.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEECCC
Q ss_conf 1683688706874148899999999963022--323641167
Q gi|254781149|r 140 QLRELILIGARPSMGKTTFALSTALHMAMSG--HGVAFFSLE 179 (266)
Q Consensus 140 ~~g~LiviaaRP~mGKTa~alnia~~~a~~g--~~Vl~fSlE 179 (266)
.+.-+|-|||.||.|||+||-.++......+ .+|.++++.
T Consensus 32 ~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmD 73 (230)
T PRK09270 32 QRRTVVGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMD 73 (230)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 971899998999889999999999998623799857997365
No 193
>PRK06851 hypothetical protein; Provisional
Probab=94.84 E-value=0.056 Score=34.00 Aligned_cols=58 Identities=24% Similarity=0.307 Sum_probs=42.9
Q ss_pred CCCHHHH-HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf 5111377-77765530168368870687414889999999996302232364116753489
Q gi|254781149|r 125 IKWGLQS-VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREK 184 (266)
Q Consensus 125 i~TG~~~-LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~q 184 (266)
-|-|.-+ ++.++.+..+ .++|-||||.|||++.-.++..+..+|..|-++--=+..+.
T Consensus 199 TP~G~v~~i~~l~~~~~~--~y~ikG~pGtGKstlL~~i~~~A~~~G~dvevyhc~fdPd~ 257 (368)
T PRK06851 199 TPKGAVDHVPSLTEGVKN--RYFLKGRPGTGKSTMLKKVAKAAEERGLDVEVYHCPFDPNS 257 (368)
T ss_pred CCCCHHHHHHHHHHCCCE--EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 999645147878606786--99981899987799999999999985982899807989886
No 194
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=94.84 E-value=0.22 Score=29.84 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=57.5
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHH-HH------CCCCE------------EEECC----------CCCH-HHH--
Q ss_conf 30168368870687414889999999996-30------22323------------64116----------7534-899--
Q gi|254781149|r 138 GVQLRELILIGARPSMGKTTFALSTALHM-AM------SGHGV------------AFFSL----------EMDR-EKL-- 185 (266)
Q Consensus 138 G~~~g~LiviaaRP~mGKTa~alnia~~~-a~------~g~~V------------l~fSl----------EMs~-~ql-- 185 (266)
-+++|+.+-|.|..|.|||+|+-.++--. .. .|+++ .+|.. .+|- +++
T Consensus 275 ~v~~GEivgivG~nGsGKSTL~k~L~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~gi~~vp~dr~~~~l~~~~sv~enl~~ 354 (501)
T PRK11288 275 AVRRGEIVGFFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPVDIRSPRDAIRAGIMLCPEDRKAEGIIPVASVADNINI 354 (501)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 87088399975688864879999843874887665999999888779789986177860120000255778829999986
Q ss_pred ---------------------HHHHHHHHHCCCCCCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf ---------------------99999963022323478555017--8899899999999999997299547479988989
Q gi|254781149|r 186 ---------------------GARALSNLLYPSSSRIPYLNLIR--GEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 186 ---------------------~~R~ls~~t~~~~s~I~~~~l~~--g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
..+++.. -.+....... ..|+-.+..++.=|.--+.+-++.|.|.|.--++
T Consensus 355 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~------l~~~~~~~~~~~~~LSGGq~QRvaiAraL~~~p~vLilDEPT~GLD 428 (501)
T PRK11288 355 SARRHHLRAGCLINNKWEAENADRFIRS------LNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428 (501)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHH------CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 7654035211001659999999999987------5897654437500289999999999999970999899979877899
No 195
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.81 E-value=0.39 Score=28.12 Aligned_cols=51 Identities=12% Similarity=0.209 Sum_probs=36.1
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHH
Q ss_conf 7776553016836887068741488999999999630223236411675348
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDRE 183 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ 183 (266)
+.+...++.. ..+.|=|.||.|||-++.-++..+...++.|.|++++--..
T Consensus 29 l~~~~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~ 79 (226)
T TIGR03420 29 LRQLAAGKGD-RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred HHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHH
T ss_conf 9987646688-86999899999889999999999862699579952999877
No 196
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.81 E-value=0.043 Score=34.84 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999729954747998898999999999999947
Q gi|254781149|r 217 RISQGICEKLQDFPLIIDDRPSPGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 217 ~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k~k~~ 256 (266)
..+.+.++++-+-+--+--+| ++=.++..-+++.+.+-.
T Consensus 248 ~aY~~LA~ei~en~~~~~p~p-l~~~~l~~l~~~~~~~~~ 286 (292)
T PRK13230 248 KIYRELAEKIYENNTGTIPNP-LENEQIMQIGKMIKERIK 286 (292)
T ss_pred HHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHH
T ss_conf 999999999996799978888-998999999999999987
No 197
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=94.80 E-value=0.19 Score=30.32 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCCC----------EEE---------------
Q ss_conf 1377777655301683688706874148899999999963-0------2232----------364---------------
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGHG----------VAF--------------- 175 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~~----------Vl~--------------- 175 (266)
|...||++---+.+|+++.|-|..|.|||++.--++--.. . .|.. +.+
T Consensus 31 ~~~al~~vsl~I~~GE~~~llGpsGsGKSTllr~i~Gl~~p~~G~I~i~G~di~~~~~~~r~ig~vfQ~~~L~p~ltV~e 110 (377)
T PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPSAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQ 110 (377)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 99999051879999989999999984899999999769999865999999998879866665046701265587757545
Q ss_pred ---ECC---CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HH
Q ss_conf ---116---7534899999999630223234785550178899899999999999997299547479988989-----99
Q gi|254781149|r 176 ---FSL---EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EF 244 (266)
Q Consensus 176 ---fSl---EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~i 244 (266)
|.+ -|++.++..|+...+..+.... ..+-+-.+|+..+.+++.-|..-+.+-.+.+-|.|.-.++ ++
T Consensus 111 Ni~~~l~~~~~~~~e~~~rv~e~l~~v~L~~--~~~~~p~~LSGGqrQRVaiArAL~~~P~lLllDEPts~LD~~~r~~l 188 (377)
T PRK11607 111 NIAFGLKQDKLPKAEIASRVNEMLGLVHMQE--FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRM 188 (377)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH--HHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 2454786659998999999999985446276--66589657898687899999987449978996487544799999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254781149|r 245 VHVANGLRNK 254 (266)
Q Consensus 245 ra~aR~~k~k 254 (266)
+...+++.++
T Consensus 189 ~~~l~~l~~~ 198 (377)
T PRK11607 189 QLEVVDILER 198 (377)
T ss_pred HHHHHHHHHH
T ss_conf 9999999997
No 198
>PRK04040 adenylate kinase; Provisional
Probab=94.79 E-value=0.11 Score=31.86 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=11.1
Q ss_pred CCEEEECCCCCHHHHHHHHHH
Q ss_conf 323641167534899999999
Q gi|254781149|r 171 HGVAFFSLEMDREKLGARALS 191 (266)
Q Consensus 171 ~~Vl~fSlEMs~~ql~~R~ls 191 (266)
+|-.|+-+|=+.+++..|=+.
T Consensus 110 ~P~~ivlieA~P~eIl~RR~~ 130 (189)
T PRK04040 110 NPDVIVLIEADPDEILMRRLR 130 (189)
T ss_pred CCCEEEEEECCHHHHHHHHHC
T ss_conf 998899997588999998842
No 199
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=94.78 E-value=0.28 Score=29.15 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=28.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEC-CCCCHHHHH
Q ss_conf 836887068741488999999999630223236411-675348999
Q gi|254781149|r 142 RELILIGARPSMGKTTFALSTALHMAMSGHGVAFFS-LEMDREKLG 186 (266)
Q Consensus 142 g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fS-lEMs~~ql~ 186 (266)
..+++|-||-++|||++...++.+.-..+..+.|+. ++=...+..
T Consensus 20 ~~~ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 65 (223)
T pfam01637 20 YPIIVVYGPRRCGKTALLREFLEELRELGYRVIYYDPLRREFEEKL 65 (223)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHH
T ss_conf 7189998688787999999999863346852899951444379999
No 200
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.78 E-value=0.4 Score=28.07 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=67.9
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CC-------------------------CCE---EEE
Q ss_conf 7776553016836887068741488999999999630-------22-------------------------323---641
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SG-------------------------HGV---AFF 176 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g-------------------------~~V---l~f 176 (266)
++.+---+.+|+++++-|..|+|||++.--||-=-.. .| .+| +-|
T Consensus 19 l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~p~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhMtV~~Niaf 98 (338)
T COG3839 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAF 98 (338)
T ss_pred EECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 63326897479799998999888899999996887788715999999999899557888999378301578769997341
Q ss_pred CCCCC---HHHHHHHHHHHHHCCCCCCCCHHHCCC-CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH
Q ss_conf 16753---489999999963022323478555017-889989999999999999729954747998898
Q gi|254781149|r 177 SLEMD---REKLGARALSNLLYPSSSRIPYLNLIR-GEINQEQYRISQGICEKLQDFPLIIDDRPSPGI 241 (266)
Q Consensus 177 SlEMs---~~ql~~R~ls~~t~~~~s~I~~~~l~~-g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti 241 (266)
.|.|. ++++-.|.--..-- -+|...-=|. ..|+-.+.+++.-+-.-+.+-.++.-|.|--++
T Consensus 99 ~Lk~~~~~k~ei~~rV~eva~~---L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnL 164 (338)
T COG3839 99 GLKLRGVPKAEIDKRVKEVAKL---LGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNL 164 (338)
T ss_pred HHHHCCCCHHHHHHHHHHHHHH---CCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHH
T ss_conf 6644799568889999999987---39866773590117725678999987775478878844764676
No 201
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=94.76 E-value=0.24 Score=29.61 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEE-------------------------------
Q ss_conf 3777776553016836887068741488999999999630-22323641-------------------------------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGHGVAFF------------------------------- 176 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~~Vl~f------------------------------- 176 (266)
...||++---+++|+.+.|-|+.|.|||++.--++--..- +| .|.|.
T Consensus 19 ~~aL~~Vs~~v~~GEi~~iiG~nGaGKSTLl~~i~G~~~p~~G-~I~~~g~~~~~~~~~~~~~~~~~~~~r~~~g~v~Q~ 97 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG-EVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCCCCCCHHHCCHHHHHHHHHCCEEEEEEC
T ss_conf 7887122778879979999888998899999998567888887-399746115767734459999998863241688725
Q ss_pred ---CCCCC---HHHHHHHHHHHHH------------CCCCCCCCHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf ---16753---4899999999630------------2232347855501--78899899999999999997299547479
Q gi|254781149|r 177 ---SLEMD---REKLGARALSNLL------------YPSSSRIPYLNLI--RGEINQEQYRISQGICEKLQDFPLIIDDR 236 (266)
Q Consensus 177 ---SlEMs---~~ql~~R~ls~~t------------~~~~s~I~~~~l~--~g~l~~~e~~~i~~a~~~l~~~pl~IdD~ 236 (266)
.+.|+ ..++..++...-. .+..-.++...+. -+.|+..+.+++.-|..-+.+-.+.|-|.
T Consensus 98 ~~~~l~~~~~~~~~i~~~l~~~~~~~~~~~~~~a~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llllDE 177 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDASRIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE 177 (258)
T ss_pred HHHCCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 54446853168788767888615534678999999999871376767650622147899999999999864999999859
Q ss_pred CCCCHH-----HHHHHHHHHHHHH
Q ss_conf 988989-----9999999999994
Q gi|254781149|r 237 PSPGIM-----EFVHVANGLRNKH 255 (266)
Q Consensus 237 ~~~ti~-----~ira~aR~~k~k~ 255 (266)
|.-.++ +|....|++++++
T Consensus 178 PtsgLD~~~~~~i~~~l~~l~~~~ 201 (258)
T PRK11701 178 PTGGLDVSVQARLLDLLRGLVVEL 201 (258)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 865689999999999999999960
No 202
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.75 E-value=0.41 Score=28.01 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC----------------------CCE-EEEC---
Q ss_conf 5111377777655301683688706874148899999999963-022----------------------323-6411---
Q gi|254781149|r 125 IKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG----------------------HGV-AFFS--- 177 (266)
Q Consensus 125 i~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g----------------------~~V-l~fS--- 177 (266)
-|.+.+.|+++.--+.+|+++.|-|.-|.|||++...++--.- .+| +.| ++|.
T Consensus 15 ~p~~~~aL~dIsl~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~p~~G~V~~~~~~i~~~~~~~~~~~~~~~vG~VfQ~p~ 94 (288)
T PRK13643 15 SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPE 94 (288)
T ss_pred CCCCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHHHCEEEEEECCC
T ss_conf 98727336633679859989999999994799999999748888885699999985687735447987751799997773
Q ss_pred ------------------CCCCHHHHHHHHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf ------------------675348999999996302232347855501---78899899999999999997299547479
Q gi|254781149|r 178 ------------------LEMDREKLGARALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDR 236 (266)
Q Consensus 178 ------------------lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~ 236 (266)
+.++.+++-.|....+..+ ++. ..+. -..|+..+.+++.-|.--..+-++.|-|.
T Consensus 95 ~ql~~~tV~e~vafg~~n~g~~~~e~~~~v~~~l~~v---gl~-d~~~~r~p~~LSGGqkqRvaiA~aLa~~P~vLlLDE 170 (288)
T PRK13643 95 SQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMV---GLA-DEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDE 170 (288)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCH-HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 2024336999999899986999899999999999975---993-667527976399999999999999974999999958
Q ss_pred CCCCHH
Q ss_conf 988989
Q gi|254781149|r 237 PSPGIM 242 (266)
Q Consensus 237 ~~~ti~ 242 (266)
|.-.++
T Consensus 171 PTs~LD 176 (288)
T PRK13643 171 PTAGLD 176 (288)
T ss_pred CCCCCC
T ss_conf 855589
No 203
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.35 Score=28.42 Aligned_cols=122 Identities=13% Similarity=0.142 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCCC----------E-EEE-C----CC------
Q ss_conf 377777655301683688706874148899999999963-0------2232----------3-641-1----67------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGHG----------V-AFF-S----LE------ 179 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~~----------V-l~f-S----lE------ 179 (266)
...||.+---+.+|+.+.|-|..|.|||++.-.++--.- . .|++ + .+| + -.
T Consensus 13 ~~vl~~vsl~v~~Ge~~~iiGpSGsGKSTllr~i~Gl~~p~~G~I~~~g~~v~~~~~~~r~ig~VfQ~~~Lfp~ltV~~N 92 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFEN 92 (232)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHH
T ss_conf 88987617488799899999999983999999997799998539999999999999545775699148854778919999
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----
Q ss_conf ---------5348999999996302232347855501---78899899999999999997299547479988989-----
Q gi|254781149|r 180 ---------MDREKLGARALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM----- 242 (266)
Q Consensus 180 ---------Ms~~ql~~R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~----- 242 (266)
+++++.-.|+-..+.- +...++. -++|+..+.+++.-|-.-+.+-.+.+-|.|.-.++
T Consensus 93 va~~l~~~~~~~~e~~~rv~e~l~~-----v~l~~~~~~~p~~LSGGqkQRVaiARAl~~~P~llllDEP~s~LD~~~~~ 167 (232)
T cd03300 93 IAFGLRLKKLPKAEIKERVAEALDL-----VQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRK 167 (232)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHH-----CCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH
T ss_conf 8779987699999999999999875-----89778761996669989999999999986599999980887646999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999994
Q gi|254781149|r 243 EFVHVANGLRNKH 255 (266)
Q Consensus 243 ~ira~aR~~k~k~ 255 (266)
+|+...+++.++.
T Consensus 168 ~i~~~l~~l~~~~ 180 (232)
T cd03300 168 DMQLELKRLQKEL 180 (232)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999985
No 204
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.73 E-value=0.33 Score=28.60 Aligned_cols=108 Identities=18% Similarity=0.153 Sum_probs=65.8
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-HHCC------C-----------CEEEE------CCCCC-----
Q ss_conf 777765530168368870687414889999999996-3022------3-----------23641------16753-----
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM-AMSG------H-----------GVAFF------SLEMD----- 181 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~-a~~g------~-----------~Vl~f------SlEMs----- 181 (266)
-|+++---+++|+.+.|-|+-|.|||+|.--++--. ..+| + .+.|+ ...++
T Consensus 15 il~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~sG~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ltv~en~ 94 (201)
T cd03231 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENL 94 (201)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHEEEECCCCCCCCCCCHHHHH
T ss_conf 99530788879959999999999999999999667788852999999983314877671179978765455787899999
Q ss_pred -------HHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf -------48999999996302232347855501788998999999999999972995474799889899
Q gi|254781149|r 182 -------REKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 182 -------~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
..+-..+.+... ..... .+-+-+.|+..+..|+.-|..-+.+.++++-|.|.-.++.
T Consensus 95 ~~~~~~~~~~~~~~~L~~~---~l~~~--~~~~~~~LSgGqkqRv~lA~al~~~p~llllDEPt~gLD~ 158 (201)
T cd03231 95 RFWHADHSDEQVEEALARV---GLNGF--EDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158 (201)
T ss_pred HHHHHHCCHHHHHHHHHHC---CCCHH--HCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 8753223699999999985---99103--2588234799999999999999749999998088655799
No 205
>PRK06851 hypothetical protein; Provisional
Probab=94.71 E-value=0.41 Score=27.95 Aligned_cols=16 Identities=6% Similarity=0.148 Sum_probs=6.7
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 9889899999999999
Q gi|254781149|r 237 PSPGIMEFVHVANGLR 252 (266)
Q Consensus 237 ~~~ti~~ira~aR~~k 252 (266)
|.+.-..+......+-
T Consensus 342 ~amDF~~vd~~~~~i~ 357 (368)
T PRK06851 342 PAMDFSKVDAIKEEIL 357 (368)
T ss_pred HHCCHHHHHHHHHHHH
T ss_conf 6179899999999999
No 206
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.69 E-value=0.34 Score=28.57 Aligned_cols=87 Identities=17% Similarity=0.283 Sum_probs=55.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHH-HCCCCEEEECCCCCH----HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 683688706874148899999999963-022323641167534----899999999630223234785550178899899
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMA-MSGHGVAFFSLEMDR----EKLGARALSNLLYPSSSRIPYLNLIRGEINQEQ 215 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a-~~g~~Vl~fSlEMs~----~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e 215 (266)
++-.+.+-|.+|+|||+..--+|-+.+ ..|+.|++++..==+ +|| |.-|.+ -+||..-. .+..+
T Consensus 222 ~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQL--ktYa~I-----l~iPv~vv----~~~~e 290 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQL--KRYADT-----MGMPFYPV----KDIKK 290 (432)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH--HHHHHH-----HCCCEEEE----ECHHH
T ss_conf 76299998999988899999999999997499279995266537799999--999998-----59945995----18999
Q ss_pred HHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 999999999997299547479988989
Q gi|254781149|r 216 YRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 216 ~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
+. .++.+ .+..+-+-||++.+--
T Consensus 291 l~---~al~~-~~~DlILIDTAGrS~r 313 (432)
T PRK12724 291 FK---ETLAR-DGSELILIDTAGYSHR 313 (432)
T ss_pred HH---HHHHH-CCCCEEEEECCCCCCC
T ss_conf 99---99985-6999999929998978
No 207
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=94.69 E-value=0.042 Score=34.84 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 68870687414889999999996302
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMS 169 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~ 169 (266)
.|+|-|.||+|||+++-.+|...+..
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~wa~g 27 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLWAQG 27 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 89998279898999999999999869
No 208
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.67 E-value=0.052 Score=34.25 Aligned_cols=44 Identities=18% Similarity=0.331 Sum_probs=38.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf 68870687414889999999996302232364116753489999
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGA 187 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~ 187 (266)
+.|..+-||.|||+.+.|+|...|..|+.|++.-+.+..-.+-.
T Consensus 60 I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~ 103 (265)
T COG0489 60 IAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPR 103 (265)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH
T ss_conf 99975899875689999999999963993899967466986355
No 209
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=94.67 E-value=0.17 Score=30.69 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=15.5
Q ss_pred EECCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 706874148899999999963022323641167
Q gi|254781149|r 147 IGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179 (266)
Q Consensus 147 iaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlE 179 (266)
-.|.-|+|||+..-|++...|..|+.|++....
T Consensus 8 TSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 8 TSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECC
T ss_conf 448887674310677899999739859999667
No 210
>PRK10908 cell division protein FtsE; Provisional
Probab=94.67 E-value=0.23 Score=29.67 Aligned_cols=112 Identities=11% Similarity=0.105 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCCCCEEEEC----------------------------C
Q ss_conf 1377777655301683688706874148899999999963-0223236411----------------------------6
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSGHGVAFFS----------------------------L 178 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g~~Vl~fS----------------------------l 178 (266)
|-+.|+++.--+.+|+++.|-|.-|.|||++.--++--.. .+| .|.|.. .
T Consensus 14 ~~~~L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~r~~ig~v~Q~~~l~~ 92 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAG-KIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHHHHHCCEEECCCCCCCC
T ss_conf 98798643879969989999999980799999999659999862-99999999875666677998730247746830168
Q ss_pred C---------------CCHHHHHHHHHHHHHCCCCCCCCHH-HCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 7---------------5348999999996302232347855-50178899899999999999997299547479988989
Q gi|254781149|r 179 E---------------MDREKLGARALSNLLYPSSSRIPYL-NLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 179 E---------------Ms~~ql~~R~ls~~t~~~~s~I~~~-~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
+ ++.+++..|+...+-.+ ++... +-.-.+|+..+.+++.-|..-+.+-++.|-|.|.-.++
T Consensus 93 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~---gl~~~~~~~p~~LSGGq~QRvaiAraL~~~P~iLllDEPt~~LD 169 (222)
T PRK10908 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKV---GLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169 (222)
T ss_pred CCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 977004565789884999899999999999874---87657648876689689999999999976999999909876679
Q ss_pred H
Q ss_conf 9
Q gi|254781149|r 243 E 243 (266)
Q Consensus 243 ~ 243 (266)
.
T Consensus 170 ~ 170 (222)
T PRK10908 170 D 170 (222)
T ss_pred H
T ss_conf 9
No 211
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=94.66 E-value=0.034 Score=35.55 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH---------------------------CCCCEEEE
Q ss_conf 851113777776553016836887068741488999999999630---------------------------22323641
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM---------------------------SGHGVAFF 176 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~---------------------------~g~~Vl~f 176 (266)
-+|||.+.+|-++. ...|+=|=|=|-||+|||++.-.||.++.- ..++|+++
T Consensus 136 PL~tGvRaiDGlLT-cG~GQRiGIFA~aG~GKSTLL~~i~~g~~ADv~V~ALIGERGREVREFiE~~lg~e~~~RsVlVv 214 (430)
T TIGR02546 136 PLPTGVRAIDGLLT-CGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHLLGEEGRKRSVLVV 214 (430)
T ss_pred CCHHHHHHHHHHHH-CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHCCCEEEEE
T ss_conf 51014667543440-36653057870888616689999861898878998602787604788875207830524248996
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC-CC---CCHHHHHHHHHHHHHH
Q ss_conf 16753489999999963022323478555017-88---9989999999999999
Q gi|254781149|r 177 SLEMDREKLGARALSNLLYPSSSRIPYLNLIR-GE---INQEQYRISQGICEKL 226 (266)
Q Consensus 177 SlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~-g~---l~~~e~~~i~~a~~~l 226 (266)
|. |..-=+.|+-|..+.-.. ...+|. |+ |-=+-..|+..|..++
T Consensus 215 sT--SDrss~eR~~AAy~ATaI----AEYFRDQGk~VlLmmDSlTRfARA~REi 262 (430)
T TIGR02546 215 ST--SDRSSLERLKAAYTATAI----AEYFRDQGKRVLLMMDSLTRFARALREI 262 (430)
T ss_pred EC--CCCCHHHHHHHHHHHHHH----HHHHHHCCCEEEEEEECHHHHHHHHHHH
T ss_conf 07--986679999998788799----9999973990798840277999998778
No 212
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.66 E-value=0.43 Score=27.87 Aligned_cols=120 Identities=16% Similarity=0.091 Sum_probs=70.5
Q ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCCCEEEE------CCCCCHHHHHHHHHHHHHCCCC----
Q ss_conf 553016836887068741488999999999630-------22323641------1675348999999996302232----
Q gi|254781149|r 136 MGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGHGVAFF------SLEMDREKLGARALSNLLYPSS---- 198 (266)
Q Consensus 136 ~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~~Vl~f------SlEMs~~ql~~R~ls~~t~~~~---- 198 (266)
-|-+.+|+.+.|-|.-|.|||+|.--++--.-- .|..+.|. ...++..++.............
T Consensus 19 ~Gti~~GEiv~liGpNGaGKSTLlk~l~Gll~p~~G~I~~~g~~i~~~pq~~~~~~~~tv~~~l~~~~~~~~~~~~~~~e 98 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE 98 (246)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf 88465798999997999769999999977878886079989820576874332577727999999886431212799999
Q ss_pred --CCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHHHHHH
Q ss_conf --347855501---78899899999999999997299547479988989-----9999999999994
Q gi|254781149|r 199 --SRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGLRNKH 255 (266)
Q Consensus 199 --s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~k~k~ 255 (266)
..+....+. -..|+..|..++.-|..-+.+.++++-|.|.-.++ ++....|++.+++
T Consensus 99 ~~~~l~l~~~~~r~~~~LSGGqkQRv~iA~aL~~~p~ilLLDEPts~LD~~~~~~i~~~i~~l~~~~ 165 (246)
T cd03237 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN 165 (246)
T ss_pred HHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9988499567648700289859999999999841999999848987689999999999999999867
No 213
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.64 E-value=0.2 Score=30.18 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.3
Q ss_pred EEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8870687414889999999996
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHM 166 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~ 166 (266)
+++-|.||.|||+.|.-+|...
T Consensus 39 lLf~GPpG~GKTt~A~~lA~~l 60 (337)
T PRK12402 39 LVVYGPSGSGKTAAVRALAREL 60 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9888929848999999999996
No 214
>PRK06893 DNA replication initiation factor; Validated
Probab=94.63 E-value=0.3 Score=28.93 Aligned_cols=105 Identities=14% Similarity=0.233 Sum_probs=59.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHH-HHH
Q ss_conf 8368870687414889999999996302232364116753489999999963022323478555017889989999-999
Q gi|254781149|r 142 RELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYR-ISQ 220 (266)
Q Consensus 142 g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~-~i~ 220 (266)
+.++.|-|.+|+|||-+...++..+..+++++.|.+++.... ...-++..+...+.--|+.-+.-.| ..+|+ .+-
T Consensus 39 ~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~-~~~~~l~~l~~~d~l~iDDi~~i~g---~~~~e~~lF 114 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY-FSPAVLENLEQQDLVCLDDLQAVIG---NEEWELAIF 114 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHH-CCHHHHHHHHHCCEEEEECHHHHCC---CHHHHHHHH
T ss_conf 987999899999889999999999997189859997377564-0699998765479799967234248---838999999
Q ss_pred HHHHHHHHC--C-CEEE-C-CCC---CCHHHHHHHHHH
Q ss_conf 999999729--9-5474-7-998---898999999999
Q gi|254781149|r 221 GICEKLQDF--P-LIID-D-RPS---PGIMEFVHVANG 250 (266)
Q Consensus 221 ~a~~~l~~~--p-l~Id-D-~~~---~ti~~ira~aR~ 250 (266)
...+++.+. + +.+- + .|. ..+.+++|+.+.
T Consensus 115 ~l~N~l~~~~~~~ll~ss~~~p~~l~~~l~DL~SRl~~ 152 (229)
T PRK06893 115 DLFNRIKESGKTLLLISANQSPHALQIKLPDLASRLTW 152 (229)
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHCCHHHHHHHHHHC
T ss_conf 99999997599179985798833221002679999968
No 215
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.61 E-value=0.44 Score=27.80 Aligned_cols=110 Identities=18% Similarity=0.138 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCCC---------EEEE------CCCCCHHHHH
Q ss_conf 3777776553016836887068741488999999999630-------2232---------3641------1675348999
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGHG---------VAFF------SLEMDREKLG 186 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~~---------Vl~f------SlEMs~~ql~ 186 (266)
-+-|+.+---+.+|+.+.|-|.-|.|||++.--++--..- .|++ +.|. ..+|+..+-.
T Consensus 24 ~~vl~~isf~v~~Ge~~~l~GpNGaGKTTLlr~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~l~~~lt~~enl 103 (214)
T PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENL 103 (214)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCHHHCCEEEEECCCCCCCCCCCHHHHH
T ss_conf 99982638898189899999999987999999997697788419999999997540213589980145446887699999
Q ss_pred ---------------HHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf ---------------999996302232347855501788998999999999999972995474799889899
Q gi|254781149|r 187 ---------------ARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 187 ---------------~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
.+.+... .... ..+-+-+.|+..+.+|+.=|.--+.+.++++-|.|.-.++.
T Consensus 104 ~~~~~l~~~~~~~~~~~~l~~~---gl~~--~~~~~~~~LSgGqkqRv~lA~al~~~p~illLDEPt~~LD~ 170 (214)
T PRK13543 104 HFLCGLHGRRAKQMPGSALAIV---GLAG--YEDALVRQLSAGQRKRLALARLWLSPAPLWLLDEPYANLDL 170 (214)
T ss_pred HHHHHHCCCCHHHHHHHHHHHC---CCCC--HHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 9998625877999999999986---9944--00078234899999999999998579999998099888999
No 216
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.61 E-value=0.055 Score=34.05 Aligned_cols=41 Identities=29% Similarity=0.484 Sum_probs=34.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEECCCCCHHH
Q ss_conf 68870687414889999999996302-232364116753489
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMS-GHGVAFFSLEMDREK 184 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~-g~~Vl~fSlEMs~~q 184 (266)
..+++++-|+|||++|.|+|...|.+ ++.|++..+.+.--+
T Consensus 2 i~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqfGd 43 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD 43 (106)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 899728998668999999999999841993899965467799
No 217
>PHA02518 ParA-like protein; Provisional
Probab=94.57 E-value=0.062 Score=33.67 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 4148899999999963022323641
Q gi|254781149|r 152 SMGKTTFALSTALHMAMSGHGVAFF 176 (266)
Q Consensus 152 ~mGKTa~alnia~~~a~~g~~Vl~f 176 (266)
|+|||+++.|+|...+.+|+.|+++
T Consensus 11 GvGKTT~a~nLA~~la~~G~~Vlli 35 (211)
T PHA02518 11 GAGKTTVATNLASWLHADGHKVLLV 35 (211)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9749999999999999789948999
No 218
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.56 E-value=0.25 Score=29.47 Aligned_cols=123 Identities=18% Similarity=0.116 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEC----------------------------
Q ss_conf 1113777776553016836887068741488999999999630223236411----------------------------
Q gi|254781149|r 126 KWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFS---------------------------- 177 (266)
Q Consensus 126 ~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fS---------------------------- 177 (266)
|.|-+.||++.--+.+|+.+.|-|.-|.|||++...++--..-..-.|.++.
T Consensus 15 ~~g~~aL~~vs~~i~~Ge~~aiiG~NGsGKSTLl~~l~Gl~~p~~G~I~i~G~~i~~~~~~~lr~~iG~vfQ~p~~ql~~ 94 (273)
T PRK13647 15 PDGTKALDGVSLVIPEGSKTAILGPNGAGKSTLLLHLNGIYTAQRGRVKVMGKVVNEENIRWIRKKVGLVFQDPDDQLFS 94 (273)
T ss_pred CCCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHCEEEECCCHHHHCC
T ss_conf 99888988117898899899999999975999999996698888619999999999689899987524881070243052
Q ss_pred -------------CCCCHHHHHHHHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH
Q ss_conf -------------675348999999996302232347855501---7889989999999999999729954747998898
Q gi|254781149|r 178 -------------LEMDREKLGARALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI 241 (266)
Q Consensus 178 -------------lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti 241 (266)
+.++.+++..|.-..+.. +....+. -..|+-.+.+++.-|..-+.+-++.|-|.|.-.+
T Consensus 95 ~tV~e~v~fg~~~~g~~~~e~~~rv~~~L~~-----~~l~~~~~~~p~~LSGGqkqRvaiA~aL~~~P~lliLDEPtagL 169 (273)
T PRK13647 95 STVWDDVAFGPQNLELDKKEILRRVEEALKA-----VDMWDLREKAPYHLSYGQKKRVAIAGVLAMEPDIIVLDEPMAYL 169 (273)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----CCCHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 4199999999988599999999999999987-----79587664793339998999999999998199999997976579
Q ss_pred H-----HHHHHHHHHHH
Q ss_conf 9-----99999999999
Q gi|254781149|r 242 M-----EFVHVANGLRN 253 (266)
Q Consensus 242 ~-----~ira~aR~~k~ 253 (266)
+ +|....+++++
T Consensus 170 Dp~~~~~l~~~l~~L~~ 186 (273)
T PRK13647 170 DPRGKEELTAILNRLNN 186 (273)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 99999999999999984
No 219
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.55 E-value=0.22 Score=29.89 Aligned_cols=123 Identities=24% Similarity=0.236 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCCCE-------------E-EE-----CCCCC
Q ss_conf 13777776553016836887068741488999999999630-------22323-------------6-41-----16753
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGHGV-------------A-FF-----SLEMD 181 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~~V-------------l-~f-----SlEMs 181 (266)
|...||++.--+++|+.+-|.|.-|.|||++.-.++--.-- .|+++ . .| --+|+
T Consensus 17 ~~~al~~vs~~v~~Gei~~liGpnGaGKSTL~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g~~~~~q~~~l~~~lt 96 (255)
T PRK11300 17 GLLAVNNVNLEVREQEVVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLDGQHIEGLPGHQIARMGVVRTFQHVRLFKEMT 96 (255)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCCEEECCCCCCCCCCC
T ss_conf 99988040889899979999989996499999999679889860899999988879999998668255322300277864
Q ss_pred HHHH------------------------------HHHHHHHHHCCCCCCCCHHHC---CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4899------------------------------999999630223234785550---1788998999999999999972
Q gi|254781149|r 182 REKL------------------------------GARALSNLLYPSSSRIPYLNL---IRGEINQEQYRISQGICEKLQD 228 (266)
Q Consensus 182 ~~ql------------------------------~~R~ls~~t~~~~s~I~~~~l---~~g~l~~~e~~~i~~a~~~l~~ 228 (266)
..+- ..|....+ ..+....+ .-+.|+-.+.+++.-|..-+.+
T Consensus 97 v~enl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-----~~~~l~~~~~~~~~~LSgGq~Qrv~iAraL~~~ 171 (255)
T PRK11300 97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWL-----ERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQ 171 (255)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH-----HHCCCCHHHCCCHHHCCCHHHHHHHHHHHHHHC
T ss_conf 877765554420220034332125201066899999999999-----976992131588466794889999999999729
Q ss_pred CCCEEECCCCCCH-----HHHHHHHHHHHHHH
Q ss_conf 9954747998898-----99999999999994
Q gi|254781149|r 229 FPLIIDDRPSPGI-----MEFVHVANGLRNKH 255 (266)
Q Consensus 229 ~pl~IdD~~~~ti-----~~ira~aR~~k~k~ 255 (266)
-++.|-|.|.-.+ .+|....+++++++
T Consensus 172 P~lLlLDEPt~gLD~~~~~~i~~~i~~l~~~~ 203 (255)
T PRK11300 172 PRILMLDEPAAGLNPKETKELDELIAELRNEH 203 (255)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99699818754699999999999999999715
No 220
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.55 E-value=0.032 Score=35.69 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=33.3
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 64116753489999999963022323478555017889989999999999999729954747998898999999999999
Q gi|254781149|r 174 AFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFVHVANGLRN 253 (266)
Q Consensus 174 l~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k~ 253 (266)
-+.-|+-+...+..|+.-...+ -.+| +.......+ + |-|. ++.+++---|.+-.
T Consensus 182 ~~yvld~~tnkvi~~i~~~~ke--tr~i-----------------vsegi~~~q-----~-dlp~-~L~elqrlrrqfi~ 235 (261)
T COG4088 182 RRYVLDSSTNKVIVRIRQVMKE--TRRI-----------------VSEGIAATQ-----L-DLPR-KLSELQRLRRQFIE 235 (261)
T ss_pred CEEECCHHHHHHHHHHHHHCCC--CEEE-----------------EECCCHHHH-----C-CCCC-CHHHHHHHHHHHHH
T ss_conf 3674540367899999985222--0476-----------------414422432-----0-4664-37999999999998
Q ss_pred HHHHHHHHH
Q ss_conf 947999864
Q gi|254781149|r 254 KHTKMVQLY 262 (266)
Q Consensus 254 k~~~~~~~~ 262 (266)
+-+++.+.+
T Consensus 236 ~inK~~~~d 244 (261)
T COG4088 236 DINKAVRED 244 (261)
T ss_pred HHHHHHHHH
T ss_conf 689999998
No 221
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.54 E-value=0.043 Score=34.80 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf 8511137777765530168368870687414889999999996302232364116753489
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREK 184 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~q 184 (266)
-+.||++.+|-++. +.+|+=+-|=|-+|+|||++++++..+...++.-|.|.-.-...++
T Consensus 52 ~l~TGI~aID~l~p-ig~GQr~~If~~~g~GKt~l~~~~i~~~~~~~~~~V~~~IGer~rE 111 (274)
T cd01132 52 PLQTGIKAIDAMIP-IGRGQRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKAST 111 (274)
T ss_pred CCCCCCEEEECCCC-CCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHH
T ss_conf 11038345413466-2478675155888755788999999974136965999973245226
No 222
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.52 E-value=0.21 Score=30.03 Aligned_cols=120 Identities=19% Similarity=0.153 Sum_probs=71.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC-------------CE-EEEC-----------
Q ss_conf 777776553016836887068741488999999999630-------223-------------23-6411-----------
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH-------------GV-AFFS----------- 177 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~-------------~V-l~fS----------- 177 (266)
+.|+++---+.+|+.+.|-|..|.|||+++..++--..- .|. .+ .+|.
T Consensus 25 ~al~~Isl~i~~GE~v~iiG~nGsGKSTL~r~l~gl~~P~~G~I~i~G~~~~~~~~~~~~r~~ig~vfQ~P~~~l~~~tV 104 (281)
T PRK13633 25 IALDDVNLEVKKGEFLVILGHNGSGKSTIAKHMNALLLPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV 104 (281)
T ss_pred CEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCEEEEEECCCCCCCHHHH
T ss_conf 26734076887998999999999849999999975887888569999998788566999873608986688642028899
Q ss_pred ----------CCCCHHHHHHHHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH--
Q ss_conf ----------675348999999996302232347855501---78899899999999999997299547479988989--
Q gi|254781149|r 178 ----------LEMDREKLGARALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-- 242 (266)
Q Consensus 178 ----------lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-- 242 (266)
+-++.+++-.|.-..+- .+....++ -..|+-.+.+++.-|.--..+-.+.|-|.|.-.++
T Consensus 105 ~e~i~fg~~~~g~~~~e~~~rv~~~l~-----~~gL~~~~~~~p~~LSGGqkQRvaiA~aLa~~P~iLilDEPTs~LDp~ 179 (281)
T PRK13633 105 EEDVAFGPENLGIPPEEIRERVDESLK-----KVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 179 (281)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHH-----HCCCHHHHHCCCHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 999998898869999999999999998-----679487663891008985999999999998599999981873438989
Q ss_pred ---HHHHHHHHHHHH
Q ss_conf ---999999999999
Q gi|254781149|r 243 ---EFVHVANGLRNK 254 (266)
Q Consensus 243 ---~ira~aR~~k~k 254 (266)
+|....+++.++
T Consensus 180 ~~~~i~~~l~~l~~e 194 (281)
T PRK13633 180 GRREVVNTIKELNKK 194 (281)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999984
No 223
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.49 E-value=0.14 Score=31.34 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=67.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH--------------------------HH-HCCCCE----------
Q ss_conf 77776553016836887068741488999999999--------------------------63-022323----------
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALH--------------------------MA-MSGHGV---------- 173 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~--------------------------~a-~~g~~V---------- 173 (266)
.|+++.--+.||+.+.|.|+.|.|||++.--+.-- ++ ....|.
T Consensus 17 vL~ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNI 96 (234)
T cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENI 96 (234)
T ss_pred CEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCEECCCCHHHHH
T ss_conf 35360899879999999989998299999999667667886899999996608999997317999368947164599996
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCC------CCCCHHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf 6411675348999999996302232------34785550178-89989999999999999729954747998898999
Q gi|254781149|r 174 AFFSLEMDREKLGARALSNLLYPSS------SRIPYLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 174 l~fSlEMs~~ql~~R~ls~~t~~~~------s~I~~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
.|..-+-+.+++..- +.. .++.. .+++..--.+| .|+..++.++.=|-.-+.+.|++|-|.|.-+++..
T Consensus 97 ~~g~~~~~~~~i~~~-l~~-~~l~~~i~~l~~gl~t~i~~~g~~LSgGQ~QRi~lARal~~~~~iliLDEpts~LD~~ 172 (234)
T cd03251 97 AYGRPGATREEVEEA-ARA-ANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE 172 (234)
T ss_pred HCCCCCCCHHHHHHH-HHH-HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 147989999999999-998-6345542027788755638878958999999999999996499989996876689989
No 224
>pfam00772 DnaB DnaB-like helicase N terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity.
Probab=94.48 E-value=0.048 Score=34.45 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=31.9
Q ss_pred HHHHHHHHCC---CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8989863005---7785689999984067636899999999999
Q gi|254781149|r 4 EIISHFESQT---KISFSTYLNNLLTLASSISSEVINAARRVVQ 44 (266)
Q Consensus 4 ~~~~~le~~~---~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e 44 (266)
.|.+++++.+ ++||..||.+|++.+++ ++|+.+|+++|++
T Consensus 61 tl~~~l~~~~~~~~~gg~~yL~~L~~~~~~-~~~~~~Ya~~v~e 103 (103)
T pfam00772 61 TVAEELERKGKLEEVGGIAYLAELADNVPS-AANIEYYARIVKE 103 (103)
T ss_pred HHHHHHHHCCCHHHCCHHHHHHHHHHHCCC-HHHHHHHHHHHCC
T ss_conf 999999767981423759999999982997-9999999998709
No 225
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.48 E-value=0.4 Score=28.03 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHCC---CEEECCCCCCH-----HHHHHHHHHHHH
Q ss_conf 8899899999999999997299---54747998898-----999999999999
Q gi|254781149|r 209 GEINQEQYRISQGICEKLQDFP---LIIDDRPSPGI-----MEFVHVANGLRN 253 (266)
Q Consensus 209 g~l~~~e~~~i~~a~~~l~~~p---l~IdD~~~~ti-----~~ira~aR~~k~ 253 (266)
..|+-.|++|+.=|..-+.+.+ ++|-|.|.-.+ .++....++++.
T Consensus 168 ~~LSGGqkQRvaiAraL~~~~~~P~lllLDEPTs~LD~~~~~~l~~~l~~l~~ 220 (261)
T cd03271 168 TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD 220 (261)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 56688999999999999725888967995486345998999999999999997
No 226
>PRK06315 type III secretion system ATPase; Provisional
Probab=94.47 E-value=0.042 Score=34.85 Aligned_cols=59 Identities=22% Similarity=0.172 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHH
Q ss_conf 851113777776553016836887068741488999999999630223236411675348
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDRE 183 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ 183 (266)
-+.||++.+|-++. +.+|+=+-|=|-+|+|||+++..++.|+...+..|...--|...+
T Consensus 147 pl~TGIraID~llp-ig~GQR~gIfagsGvGKs~Ll~~i~~~~~~adv~V~~lIGeRgrE 205 (442)
T PRK06315 147 ILSTGVRCIDGMLT-VARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGRE 205 (442)
T ss_pred CCCCCCEEECCCCC-CCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf 53368530011277-023777640389999888999999974403893499995511379
No 227
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.46 E-value=0.11 Score=31.87 Aligned_cols=117 Identities=17% Similarity=0.209 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCC----------------------CEEEECC----
Q ss_conf 1113777776553016836887068741488999999999630-223----------------------2364116----
Q gi|254781149|r 126 KWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGH----------------------GVAFFSL---- 178 (266)
Q Consensus 126 ~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~----------------------~Vl~fSl---- 178 (266)
+.+-+.|+++.--+.+|+++.|-|+.|.|||++..-++--.-. +|. .+.|..-
T Consensus 11 ~~~~~vL~~inl~i~~Ge~~~IvG~sGsGKSTLl~~l~g~~~~~~G~I~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l 90 (218)
T cd03290 11 GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWL 90 (218)
T ss_pred CCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHCCEEEEEECCCCC
T ss_conf 99990564769998699999999999980999999985556567764998986668646777888756538998156656
Q ss_pred -CCCHHH-----------HHHHHHHHHHC-CCCCCCCH---HHCC-CC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf -753489-----------99999996302-23234785---5501-78-8998999999999999972995474799889
Q gi|254781149|r 179 -EMDREK-----------LGARALSNLLY-PSSSRIPY---LNLI-RG-EINQEQYRISQGICEKLQDFPLIIDDRPSPG 240 (266)
Q Consensus 179 -EMs~~q-----------l~~R~ls~~t~-~~~s~I~~---~~l~-~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~t 240 (266)
.++-.+ -....+....- ......+. ..+. +| .|+..+++++.=|-.-+.+.+++|-|.|.-.
T Consensus 91 f~~Tv~eNi~~g~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~i~~~g~~LSGGQ~QRi~iARal~~~~~illlDEptsa 170 (218)
T cd03290 91 LNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSA 170 (218)
T ss_pred CCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 78899998733797788999999999987777875105430540567887798999999999998448999999896557
Q ss_pred HH
Q ss_conf 89
Q gi|254781149|r 241 IM 242 (266)
Q Consensus 241 i~ 242 (266)
++
T Consensus 171 LD 172 (218)
T cd03290 171 LD 172 (218)
T ss_pred CC
T ss_conf 88
No 228
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.46 E-value=0.22 Score=29.83 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=55.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 68870687414889999999996302232364116753489999999963022323478555017889989999999999
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGIC 223 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~ 223 (266)
.+.++|.||.|||++...+......+ +++.+..-..-.++=..|+... ..++.-.+.+|+.=.++-.-...++
T Consensus 15 ~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~------~g~~i~~v~TG~~CH~da~m~~~ai 87 (202)
T COG0378 15 RIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL------PGEPIIGVETGKGCHLDASMNLEAI 87 (202)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH-CCEEEEECEEECHHHHHHHHHC------CCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 99961799867899999999999752-7768996404006559999737------7980687403876588678899999
Q ss_pred HHHHHC
Q ss_conf 999729
Q gi|254781149|r 224 EKLQDF 229 (266)
Q Consensus 224 ~~l~~~ 229 (266)
++|..+
T Consensus 88 ~~l~~~ 93 (202)
T COG0378 88 EELVLD 93 (202)
T ss_pred HHHHHC
T ss_conf 998631
No 229
>PRK10744 phosphate transporter subunit; Provisional
Probab=94.44 E-value=0.22 Score=29.88 Aligned_cols=124 Identities=11% Similarity=0.081 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH------------HHCCCC--------------EEE-E----C
Q ss_conf 37777765530168368870687414889999999996------------302232--------------364-1----1
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM------------AMSGHG--------------VAF-F----S 177 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~------------a~~g~~--------------Vl~-f----S 177 (266)
...|+++---+.+|+.+.|-|+-|.|||++.--++.-. ...|.. +.+ | .
T Consensus 23 ~~aL~~vsl~i~~Ge~~~liG~nGaGKSTLlk~i~gl~~l~p~~~~~G~I~~~G~~i~~~~~~~~~~r~~ig~v~Q~~~~ 102 (257)
T PRK10744 23 FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNKMYELYPEQRAEGEILLDGDNILTNSQDIALLRAKVGMVFQKPTP 102 (257)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCEECCCCHHHHHHHHHCEEEEEECCCC
T ss_conf 76781428998899899999999981999999998765127888754059689926557615499987206899436755
Q ss_pred CCCCHH----------------HHHHHHHHHHHCCCCCCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 675348----------------9999999963022323478555017--8899899999999999997299547479988
Q gi|254781149|r 178 LEMDRE----------------KLGARALSNLLYPSSSRIPYLNLIR--GEINQEQYRISQGICEKLQDFPLIIDDRPSP 239 (266)
Q Consensus 178 lEMs~~----------------ql~~R~ls~~t~~~~s~I~~~~l~~--g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ 239 (266)
+.|+-. ++-.|+...+..+....-....+.. ..|+..+.+++.-|..-+.+-++.|-|.|.-
T Consensus 103 f~~tv~~nv~~~~~~~~~~~~~~~~~rv~~~l~~~~l~~~~~~~~~~~~~~LSGGqkQRvaiArAL~~~P~vLllDEPts 182 (257)
T PRK10744 103 FPMSIYDNIAFGVRLFEKLSRADMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCS 182 (257)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 77609999877577633588889999999999983253101342157745589889899999877751999888778855
Q ss_pred CHH-----HHHHHHHHHH
Q ss_conf 989-----9999999999
Q gi|254781149|r 240 GIM-----EFVHVANGLR 252 (266)
Q Consensus 240 ti~-----~ira~aR~~k 252 (266)
.++ +|....+.++
T Consensus 183 ~LD~~~~~~i~~ll~~l~ 200 (257)
T PRK10744 183 ALDPISTGRIEELITELK 200 (257)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 369999999999999997
No 230
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.43 E-value=0.23 Score=29.74 Aligned_cols=115 Identities=14% Similarity=-0.016 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-------HCCCCEE------EECCCCCHHHHHHHHHHHHH
Q ss_conf 1377777655301683688706874148899999999963-------0223236------41167534899999999630
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-------MSGHGVA------FFSLEMDREKLGARALSNLL 194 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-------~~g~~Vl------~fSlEMs~~ql~~R~ls~~t 194 (266)
.+..||++.--+++|+.+-|-|+-|.|||++.--++--.. ..|+++. .|--+|+..|-. ++.+.+.
T Consensus 34 ~~~AL~~isf~i~~GeivgilG~NGaGKSTLl~~i~Gl~~p~~G~I~i~G~~~~~~~~~~~~~p~ltv~enl-~~~~~~~ 112 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENI-YLNGRLL 112 (224)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCEECCCCCCHHHHH-HHHHHHC
T ss_conf 969876707898389899999799981999999997587778776999989843015742039988299999-9999982
Q ss_pred CCCCC-------------CCC-HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 22323-------------478-55501788998999999999999972995474799889899
Q gi|254781149|r 195 YPSSS-------------RIP-YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 195 ~~~~s-------------~I~-~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
+++.. .+. ..+-.-+.++-.+.+++.-|..-+.+.++.|-|.|.-.++.
T Consensus 113 g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqRl~iA~al~~~P~illLDEPt~gLD~ 175 (224)
T cd03220 113 GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 965899999999999863675565386654699999999999999669999999188665699
No 231
>PRK10490 sensor protein KdpD; Provisional
Probab=94.39 E-value=0.4 Score=28.05 Aligned_cols=53 Identities=23% Similarity=0.208 Sum_probs=24.9
Q ss_pred CCEEEEECCCCHHHH-----------HHHHHHHHHHHHCCC--CEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 836887068741488-----------999999999630223--23641167534899999999630
Q gi|254781149|r 142 RELILIGARPSMGKT-----------TFALSTALHMAMSGH--GVAFFSLEMDREKLGARALSNLL 194 (266)
Q Consensus 142 g~LiviaaRP~mGKT-----------a~alnia~~~a~~g~--~Vl~fSlEMs~~ql~~R~ls~~t 194 (266)
+.+-|++-+|..++. +|+.++|...-+... ---=--+++..+++-.=++++.+
T Consensus 607 ~~lGVlgi~~~~~~~~~~~~~~~lL~a~a~qiA~ALER~~L~~~~~~a~~~aE~ErLRsalLssVS 672 (895)
T PRK10490 607 KTYGLLAVEPGNLRQLMIPEQQRLLETFTLLVANALERLTLTASEEQARLASEREQLRNALLAALS 672 (895)
T ss_pred CEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 307999970476323478678999999999999999999999999998887777789999998603
No 232
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.39 E-value=0.24 Score=29.55 Aligned_cols=124 Identities=12% Similarity=0.087 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C------CCC------------EEEECCC------CCHH
Q ss_conf 3777776553016836887068741488999999999630-2------232------------3641167------5348
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-S------GHG------------VAFFSLE------MDRE 183 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~------g~~------------Vl~fSlE------Ms~~ 183 (266)
-+.||++---+.+|+.+.|-|.-|.|||++.--++--..- + |++ +.|..-+ |+..
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~NGaGKSTLl~~l~gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~~~~~~tv~ 103 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLASWSSKAFARKVAYLPQQLPPAEGMTVR 103 (265)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCCHH
T ss_conf 99881508898799899999999980999999995688998738999976567589899874466631124546688098
Q ss_pred HHHH-------------------HHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-
Q ss_conf 9999-------------------9999630223234785-550178899899999999999997299547479988989-
Q gi|254781149|r 184 KLGA-------------------RALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM- 242 (266)
Q Consensus 184 ql~~-------------------R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~- 242 (266)
+... |+--.+. .-++.. .+-.-+.|+..+.+++.=|..-+.+-++.|-|.|.-.++
T Consensus 104 e~i~~g~~~~~~~~~~~~~~~~~~v~~~l~---~~gl~~~~~~~~~~LSGGq~QRv~iAraL~~~P~lLlLDEPts~LD~ 180 (265)
T PRK10575 104 ELVAIGRYPWHGALGRFGAADREKVEEAIS---LVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180 (265)
T ss_pred HHHHHCCCHHHHHHCCCCHHHHHHHHHHHH---HCCCCHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 888716530112332477779999999999---85991365168333899999999999987569998998177655899
Q ss_pred ----HHHHHHHHHHHHH
Q ss_conf ----9999999999994
Q gi|254781149|r 243 ----EFVHVANGLRNKH 255 (266)
Q Consensus 243 ----~ira~aR~~k~k~ 255 (266)
+|....+++.+++
T Consensus 181 ~~~~~i~~~l~~l~~~~ 197 (265)
T PRK10575 181 AHQVDVLALVHRLSQER 197 (265)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999998628
No 233
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.39 E-value=0.064 Score=33.59 Aligned_cols=10 Identities=10% Similarity=-0.130 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254781149|r 34 EVINAARRVV 43 (266)
Q Consensus 34 ~~~~ya~~i~ 43 (266)
..+.|-..++
T Consensus 73 ~l~ey~~~v~ 82 (322)
T COG0003 73 ALEEYWDEVK 82 (322)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 234
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=94.38 E-value=0.49 Score=27.44 Aligned_cols=113 Identities=16% Similarity=0.075 Sum_probs=64.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCCC-------------------------CEEEEC------
Q ss_conf 77777655301683688706874148899999999963-0223-------------------------236411------
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSGH-------------------------GVAFFS------ 177 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g~-------------------------~Vl~fS------ 177 (266)
+.+|++.--+++|+.+-|.|.-|.|||+++--++--.- ..|. .+.+..
T Consensus 298 ~al~~vs~~v~~GEi~gi~G~nGsGKsTL~k~l~Gl~~p~~G~V~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 377 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY 377 (520)
T ss_pred EEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCC
T ss_conf 46512068972896899987888878999999948878987479997387444366758667787625514994665457
Q ss_pred CCCCHHHHHHHHHHHHHC-----------CCCCCCCHHH---C--C-CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 675348999999996302-----------2323478555---0--1-788998999999999999972995474799889
Q gi|254781149|r 178 LEMDREKLGARALSNLLY-----------PSSSRIPYLN---L--I-RGEINQEQYRISQGICEKLQDFPLIIDDRPSPG 240 (266)
Q Consensus 178 lEMs~~ql~~R~ls~~t~-----------~~~s~I~~~~---l--~-~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~t 240 (266)
..|+-.+-..+-+..... .....++... + + -..|+-.+..++.-|..-+.+-.+.|.|.|..-
T Consensus 378 p~~tv~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~r~p~~LSGGq~QRvaiAraL~~~P~vlilDEPT~g 457 (520)
T TIGR03269 378 PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGT 457 (520)
T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 67889999999986357668999999999997599766777765479211899999999999999979898999386011
Q ss_pred HH
Q ss_conf 89
Q gi|254781149|r 241 IM 242 (266)
Q Consensus 241 i~ 242 (266)
++
T Consensus 458 lD 459 (520)
T TIGR03269 458 MD 459 (520)
T ss_pred HH
T ss_conf 33
No 235
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=94.38 E-value=0.1 Score=32.25 Aligned_cols=54 Identities=31% Similarity=0.345 Sum_probs=41.9
Q ss_pred CCCCE-EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 16836-8870687414889999999996302232364116753489999999963
Q gi|254781149|r 140 QLREL-ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNL 193 (266)
Q Consensus 140 ~~g~L-iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~ 193 (266)
++|.| |.+|+-||+|||--+|+-|.....+|..|.+--+|--...=...++..+
T Consensus 2 ~rG~LkIylG~apGVGKTy~ML~eA~~l~~~G~DVViG~vEthgR~eT~~l~~gL 56 (211)
T pfam02702 2 RRGKLKIFLGAAPGVGKTYAMLSEAHELLERGVDVVIGYVETHGRAETAALLEGL 56 (211)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCC
T ss_conf 9761689853599877899999999999978995699995379978999997687
No 236
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.35 E-value=0.15 Score=30.99 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH----HCCCCEEEECC----------------------CCCH
Q ss_conf 377777655301683688706874148899999999963----02232364116----------------------7534
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA----MSGHGVAFFSL----------------------EMDR 182 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a----~~g~~Vl~fSl----------------------EMs~ 182 (266)
..-|+++..-+.+|+++.|-|+.|.|||++.--++--.- ..| .|.|..- .|+.
T Consensus 20 ~~vL~~vs~~i~~Ge~~~ilGpnGsGKSTLl~~i~G~~~~~~~~~G-~I~~~g~~~~~~~~~~~igyv~Q~~~l~~~lTv 98 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSG-QILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98 (226)
T ss_pred EEEEECCEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEE-EEEECCEECCHHHHHHCEEEECCCCCCCCCCCH
T ss_conf 8998897789918809999989996099999999678978984145-999999999878975018999166756789889
Q ss_pred HHHHHHHHHHHHC---------------CCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH--
Q ss_conf 8999999996302---------------232347855501---78899899999999999997299547479988989--
Q gi|254781149|r 183 EKLGARALSNLLY---------------PSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-- 242 (266)
Q Consensus 183 ~ql~~R~ls~~t~---------------~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-- 242 (266)
.|... +.+.... .....+....+. -..|+..+.+++.-|..-+.+-++.+-|.|.-.++
T Consensus 99 ~e~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGqrqRv~iA~aL~~~P~illLDEPTsgLD~~ 177 (226)
T cd03234 99 RETLT-YTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSF 177 (226)
T ss_pred HHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 99999-99974676436278999999999998758976746773328999999999999996599989995886568999
Q ss_pred ---HHHHHHHHHHHH
Q ss_conf ---999999999999
Q gi|254781149|r 243 ---EFVHVANGLRNK 254 (266)
Q Consensus 243 ---~ira~aR~~k~k 254 (266)
+|....+.++++
T Consensus 178 ~~~~i~~~l~~l~~~ 192 (226)
T cd03234 178 TALNLVSTLSQLARR 192 (226)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999978
No 237
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=94.33 E-value=0.26 Score=29.31 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CCC------------EEEECC------CCCHH
Q ss_conf 377777655301683688706874148899999999963-02------232------------364116------75348
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GHG------------VAFFSL------EMDRE 183 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~~------------Vl~fSl------EMs~~ 183 (266)
.+.||++.--+.+|+++.|-|+-|.|||++.-.++--.. .+ |++ +.|..- .|+..
T Consensus 15 ~~~L~~isl~i~~Gei~~liGpNGaGKSTLlk~i~Gl~~p~sG~I~i~g~~i~~~~~~~~~~~i~~vpQ~~~~~~~~tv~ 94 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSARQLARRLSLLPQHHLTPEGITVR 94 (255)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCCHH
T ss_conf 99982308899899799999999981999999997598888648999999836299899851189976767578998899
Q ss_pred HHH-------------------HHHHHHHHCCCCCCCCHHHCCC---CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH
Q ss_conf 999-------------------9999963022323478555017---889989999999999999729954747998898
Q gi|254781149|r 184 KLG-------------------ARALSNLLYPSSSRIPYLNLIR---GEINQEQYRISQGICEKLQDFPLIIDDRPSPGI 241 (266)
Q Consensus 184 ql~-------------------~R~ls~~t~~~~s~I~~~~l~~---g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti 241 (266)
++. .|....+ ..+....+.. +.|+..+.+++.=|..-+.+.++.+-|.|.-.+
T Consensus 95 e~v~~g~~~~~~~~~~~~~~~~~~v~~~l-----~~~~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lllLDEPtsgL 169 (255)
T PRK11231 95 ELVSYGRSPWLSLWGRLSAEDNARVNQAM-----NQTRINHLADRRLTELSGGQRQRAFLAMVLAQDTPVVLLDEPTTYL 169 (255)
T ss_pred HHHHCCCCHHHHHCCCCCHHHHHHHHHHH-----HHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99970550123441568688999999999-----8829825647974529999999999999995399979983886448
Q ss_pred H
Q ss_conf 9
Q gi|254781149|r 242 M 242 (266)
Q Consensus 242 ~ 242 (266)
+
T Consensus 170 D 170 (255)
T PRK11231 170 D 170 (255)
T ss_pred C
T ss_conf 9
No 238
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.33 E-value=0.5 Score=27.37 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=66.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C------C----------------CCEEE-EC-----CCCC
Q ss_conf 77776553016836887068741488999999999630-2------2----------------32364-11-----6753
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-S------G----------------HGVAF-FS-----LEMD 181 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~------g----------------~~Vl~-fS-----lEMs 181 (266)
.|+++.--+++|+++.|.|.-|.|||++.--++--..- + | +.+.| |. ..|+
T Consensus 24 ~l~~vs~~i~~GE~v~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 103 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFT 103 (233)
T ss_pred EEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf 98462899889989999999994099999999669999863999999998869988999873797899916752377866
Q ss_pred ---------------HHHHHHHHHHHHHCCCCCCCCHHH-CCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf ---------------489999999963022323478555-017889989999999999999729954747998898999
Q gi|254781149|r 182 ---------------REKLGARALSNLLYPSSSRIPYLN-LIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 182 ---------------~~ql~~R~ls~~t~~~~s~I~~~~-l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
..+...|....+..+ ++.... -+-+.|+..+.+|+.-|..-+.+-++.|-|.|.-.++-.
T Consensus 104 v~eni~~~l~~~~~~~~~~~~~~~~~l~~~---gl~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPTs~LD~~ 179 (233)
T PRK11629 104 ALENVAMPLLIGKKKPAEINSRALEMLKAV---GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDAR 179 (233)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCHHHHHCCCCEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 999998899984999999999899999872---7366774984663899999999999996599999992888879999
No 239
>PRK08903 hypothetical protein; Validated
Probab=94.33 E-value=0.15 Score=30.99 Aligned_cols=54 Identities=7% Similarity=0.132 Sum_probs=41.1
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf 777765530168368870687414889999999996302232364116753489
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREK 184 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~q 184 (266)
.+.+...+..++.++.|-|.+|.|||-+..-++..+...++.+.|++.+-..+.
T Consensus 31 ~l~~~~~~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~ 84 (227)
T PRK08903 31 RLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAAASEGGKNARYLDPASPLLA 84 (227)
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
T ss_conf 999887438878669998999998889999999999806997499651104577
No 240
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=94.32 E-value=0.11 Score=32.02 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 8511137777765530168368870687414889999999996302232364116
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSL 178 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSl 178 (266)
-+.||+..+|-++- +.+|+=..|=|-++.|||+++++...|...++--+.|...
T Consensus 145 pL~TGIkaID~l~P-iGrGQR~lIiGd~gtGKT~iaidtIinqk~~~vicVyvaI 198 (502)
T PRK09281 145 PLQTGIKAIDAMIP-IGRGQRELIIGDRQTGKTAIAIDTIINQKGKDVICIYVAI 198 (502)
T ss_pred CCCCCHHHHHHCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 23311355541256-5687566752478733889999999853258836999985
No 241
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.32 E-value=0.37 Score=28.25 Aligned_cols=123 Identities=12% Similarity=0.063 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEECC-----------------------------
Q ss_conf 3777776553016836887068741488999999999630-2232364116-----------------------------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGHGVAFFSL----------------------------- 178 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~~Vl~fSl----------------------------- 178 (266)
++.|+++.--+.+|+++.|-|..|.|||++. ++...... ..-.|.|+.-
T Consensus 23 ~~vL~~isl~i~~GE~v~ivG~sGsGKSTLl-~~i~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~ 101 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLL-AILAGLDDGSSGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIP 101 (228)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 9998473889999989999999985899999-999669999967999999999979988998763064779814022479
Q ss_pred CCCHH---------------HHHHHHHHHHHCCCCCCCCHH-HCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 75348---------------999999996302232347855-50178899899999999999997299547479988989
Q gi|254781149|r 179 EMDRE---------------KLGARALSNLLYPSSSRIPYL-NLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 179 EMs~~---------------ql~~R~ls~~t~~~~s~I~~~-~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
.|+.. +.-.|....+.. -++... +-.-++|+-.+.+++.-|..-+.+-++.|-|.|.-.++
T Consensus 102 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~---~gl~~~~~~~p~~LSGGq~QRv~iAraL~~~P~llllDEPT~~LD 178 (228)
T PRK10584 102 TLNALENVELPALLRGESSAQSRNGAKALLEQ---LGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178 (228)
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 87021233468988089989999998645542---173445408878899799999999999875999999849976789
Q ss_pred -----HHHHHHHHHHHHH
Q ss_conf -----9999999999994
Q gi|254781149|r 243 -----EFVHVANGLRNKH 255 (266)
Q Consensus 243 -----~ira~aR~~k~k~ 255 (266)
+|....+++.+++
T Consensus 179 ~~~~~~i~~~l~~l~~~~ 196 (228)
T PRK10584 179 RQTGDKIADLLFSLNREH 196 (228)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999972
No 242
>KOG0061 consensus
Probab=94.30 E-value=0.32 Score=28.74 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=79.8
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH----------CCCC---------------------------E
Q ss_conf 77776553016836887068741488999999999630----------2232---------------------------3
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM----------SGHG---------------------------V 173 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~----------~g~~---------------------------V 173 (266)
-|+++.|=++||++.-|-|..|.|||++.--+|-.... +|++ .
T Consensus 45 iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~Et 124 (613)
T KOG0061 45 ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRET 124 (613)
T ss_pred EECCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHCCEEECCCCCCCCCCEEEEE
T ss_conf 32187799867868999768887799999999577887887615999898227645520003478133455665443023
Q ss_pred EEEC----C--CCCHHHHHHHHHHHHHCCCCCCCCHHHCCC---CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH---
Q ss_conf 6411----6--753489999999963022323478555017---889989999999999999729954747998898---
Q gi|254781149|r 174 AFFS----L--EMDREKLGARALSNLLYPSSSRIPYLNLIR---GEINQEQYRISQGICEKLQDFPLIIDDRPSPGI--- 241 (266)
Q Consensus 174 l~fS----l--EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~---g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti--- 241 (266)
+.|+ | +|+.++...|+-..+......++....+-. .-++-.|++|+.-|++-+.+-++-+.|.|.--+
T Consensus 125 L~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~ 204 (613)
T KOG0061 125 LRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSF 204 (613)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 44568995188778899999999999972752431402367776764601255666788884398179970898885557
Q ss_pred --HHHHHHHHHHHHH
Q ss_conf --9999999999999
Q gi|254781149|r 242 --MEFVHVANGLRNK 254 (266)
Q Consensus 242 --~~ira~aR~~k~k 254 (266)
.++-...|++.++
T Consensus 205 sA~~vv~~Lk~lA~~ 219 (613)
T KOG0061 205 SALQVVQLLKRLARS 219 (613)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 689999999999867
No 243
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=94.29 E-value=0.32 Score=28.70 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=54.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHH
Q ss_conf 83688706874148899999999963022323641167534899999999630223234785550178899899999999
Q gi|254781149|r 142 RELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQG 221 (266)
Q Consensus 142 g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~ 221 (266)
|-.+=+-|.||.|||++|-.+....-..|.+|.++.- +++-. .++ ....+.. .++ .+...++..
T Consensus 2 G~viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDG----D~~R~-~l~-------~dlgys~--~~R--~~n~~r~~~ 65 (157)
T pfam01583 2 GCTVWFTGLSGSGKSTIANALERKLFAQGISVYVLDG----DNVRH-GLN-------KDLGFSE--EDR--TENIRRIAE 65 (157)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC----HHHHC-CCC-------CCCCCCH--HHH--HHHHHHHHH
T ss_conf 8899988989999999999999999975997799768----87750-125-------7779898--999--999999999
Q ss_pred HHHHHHHCCCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9999972995474799889899999999999
Q gi|254781149|r 222 ICEKLQDFPLIIDDRPSPGIMEFVHVANGLR 252 (266)
Q Consensus 222 a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k 252 (266)
.+..+.+..+.+--+.----.++|..+|+.-
T Consensus 66 lak~l~~~g~~VIvs~isp~~~~R~~~r~~~ 96 (157)
T pfam01583 66 VAKLFADAGLIVITSFISPYRADRDMARELH 96 (157)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 9999842896588721578999999999864
No 244
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.29 E-value=0.06 Score=33.80 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=31.1
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 88706874148899999999963022323641167
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlE 179 (266)
|.|-|.-|+|||+++.|+|...|..|+.|+.+-+.
T Consensus 3 iaiyGKGGVGKTTts~NLaaaLA~~G~rVl~iD~D 37 (212)
T cd02117 3 IAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCD 37 (212)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99988983568778999999999869969999038
No 245
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.28 E-value=0.33 Score=28.63 Aligned_cols=123 Identities=13% Similarity=0.083 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECC-----------------------------
Q ss_conf 137777765530168368870687414889999999996302232364116-----------------------------
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSL----------------------------- 178 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSl----------------------------- 178 (266)
+.+.||++---+.+|+.+.|-|+-|.|||++.-.++--..-..-.|.|..-
T Consensus 16 ~~~aL~~is~~i~~Ge~~aliG~NGaGKSTLl~~i~Gll~p~~G~I~i~G~~i~~~~~~~~r~~ig~vfQ~p~~~l~~~t 95 (277)
T PRK13652 16 SKEALNNINFIAGRKQRIAVIGPNGAGKSTLFKHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCEEEEECCCHHHCCCH
T ss_conf 98798672879989989999999994799999999669999846999999999989999997132899877622213255
Q ss_pred ------------CCCHHHHHHHHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-
Q ss_conf ------------75348999999996302232347855501---78899899999999999997299547479988989-
Q gi|254781149|r 179 ------------EMDREKLGARALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM- 242 (266)
Q Consensus 179 ------------EMs~~ql~~R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~- 242 (266)
-++.+++..|+-..+- .+....++ -+.|+-.+.+++.-|.--+.+-++.|-|.|.-.++
T Consensus 96 v~~~i~~~~~~~g~~~~~~~~~v~~~l~-----~~gL~~~~~~~~~~LSGGqkqRvaiA~aL~~~P~lLlLDEPtagLDp 170 (277)
T PRK13652 96 VEQDIAFGPINLGLDEETVAHRVDEALH-----MLGLEELRDRVPHHLSGGEKKRVAIAGILAMEPQVLVLDEPTAGLDP 170 (277)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH-----HCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCH
T ss_conf 9999998898869899999999999998-----67997887189544899999999999999829999998397454899
Q ss_pred ----HHHHHHHHHHHHH
Q ss_conf ----9999999999994
Q gi|254781149|r 243 ----EFVHVANGLRNKH 255 (266)
Q Consensus 243 ----~ira~aR~~k~k~ 255 (266)
+|....+++++++
T Consensus 171 ~~~~~i~~~l~~l~~~~ 187 (277)
T PRK13652 171 QGVKELFDFLNALPETY 187 (277)
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999850
No 246
>PRK08727 hypothetical protein; Validated
Probab=94.27 E-value=0.51 Score=27.29 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=59.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHH-HH
Q ss_conf 68368870687414889999999996302232364116753489999999963022323478555017889989999-99
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYR-IS 219 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~-~i 219 (266)
+++.+.|-|.+|.|||-++..++..+...|+.+.|.+++-....... ++..+...+.=-|+.=..-.| +.+|+ .+
T Consensus 40 ~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~~~~~~~~-~l~~le~~~ll~iDDid~i~g---~~~~e~aL 115 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQAAAGRLRD-ALEALEGRSLVALDGVDSIAG---QREDEVAL 115 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHH-HHHHHCCCCEEEEECCHHCCC---CHHHHHHH
T ss_conf 88989998999998899999999999827997288447885320256-775310389789855011269---82799999
Q ss_pred HHHHHHHHHC--CCEEECCC-----CCCHHHHHHHHHH
Q ss_conf 9999999729--95474799-----8898999999999
Q gi|254781149|r 220 QGICEKLQDF--PLIIDDRP-----SPGIMEFVHVANG 250 (266)
Q Consensus 220 ~~a~~~l~~~--pl~IdD~~-----~~ti~~ira~aR~ 250 (266)
-...+.+.+. ++.+--+. ...+.+++|+.+.
T Consensus 116 FhL~N~~~~~~~~ll~ts~~~P~~l~~~l~DL~SRL~~ 153 (233)
T PRK08727 116 FDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLSQ 153 (233)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHHHC
T ss_conf 99999998619838997798956623100219999966
No 247
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=94.26 E-value=0.1 Score=32.17 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf 85111377777655301683688706874148899999999963022323641167534899
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKL 185 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql 185 (266)
-+.||+..+|.++- ..+|+=..|-|-.+.|||++|++...|...++..+.|...-....++
T Consensus 126 PLqTGIkaID~miP-IGRGQRELIiGDrqTGKTaIAldtIiNQk~~~V~cIYVAIGQK~s~V 186 (507)
T PRK07165 126 QLYTGIVAIDLLIP-IGKGQRELIIGDRQTGKTHIALNTIINQKNRNVKCIYVAIGQKRENL 186 (507)
T ss_pred HHHHHHHHHHCCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCHHHH
T ss_conf 13434678761355-56761677735788778899999998454689589999831017799
No 248
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=94.25 E-value=0.045 Score=34.65 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=31.2
Q ss_pred CEEEEE-CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 368870-68741488999999999630223236411675
Q gi|254781149|r 143 ELILIG-ARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180 (266)
Q Consensus 143 ~Livia-aRP~mGKTa~alnia~~~a~~g~~Vl~fSlEM 180 (266)
..|.|+ =.-|+|||+.+.|+|...|.+|+.|+++-|.-
T Consensus 122 kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RVLlIDLDP 160 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 289997888776599999999999997799889996456
No 249
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.17 E-value=0.19 Score=30.38 Aligned_cols=124 Identities=19% Similarity=0.142 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH---H------CCCCE------------EEEC----CC---C
Q ss_conf 377777655301683688706874148899999999963---0------22323------------6411----67---5
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA---M------SGHGV------------AFFS----LE---M 180 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a---~------~g~~V------------l~fS----lE---M 180 (266)
.+.|+++---+.+|+.+.|.|+.|.|||+++--++-.-. . .|+++ .++. .+ +
T Consensus 19 ~~vL~~isl~i~~Gei~aiiG~nGsGKSTL~~~i~G~~~~~~~~G~I~~~G~~i~~~~~~~~~~~gi~~~~Q~~~~~~~~ 98 (252)
T CHL00131 19 TEILKGINLSINAGEIHAIMGPNGSGKSTLSKVIAGHPAYTVLEGDILFKGESILELEPEERAHLGIFLAFQYPIEIPGV 98 (252)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCHHHHHHCCEEEEEECHHHCCCC
T ss_conf 99885617788799899999999999999999972787667664259987727685999999865967854202432575
Q ss_pred CHHHHHHHHHHHHH----C----------------CCCCCCCHHHCCC--C-CCCHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 34899999999630----2----------------2323478555017--8-8998999999999999972995474799
Q gi|254781149|r 181 DREKLGARALSNLL----Y----------------PSSSRIPYLNLIR--G-EINQEQYRISQGICEKLQDFPLIIDDRP 237 (266)
Q Consensus 181 s~~ql~~R~ls~~t----~----------------~~~s~I~~~~l~~--g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~ 237 (266)
+..+.. |+..... + +..-+++...+.+ + .|+..+.+++.-|..-+.+-++.|-|.|
T Consensus 99 ~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~r~~~~~LSGGqkqRv~iaral~~~P~iLiLDEP 177 (252)
T CHL00131 99 SNADFL-RLAYNAKRKFQGLPELDPLEFFEIISEKLKLVGMDPSFLNRNVNEGFSGGEKKRNEILQMALLDSKLAILDET 177 (252)
T ss_pred CHHHHH-HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 599999-9887666554043315889999999999987499857753365545789999999999999639999999798
Q ss_pred CCCHH-----HHHHHHHHHHH
Q ss_conf 88989-----99999999999
Q gi|254781149|r 238 SPGIM-----EFVHVANGLRN 253 (266)
Q Consensus 238 ~~ti~-----~ira~aR~~k~ 253 (266)
.-.++ +|....+++++
T Consensus 178 TsgLD~~~~~~i~~~l~~l~~ 198 (252)
T CHL00131 178 DSGLDIDALKIIAEGINKLAT 198 (252)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 766999999999999999985
No 250
>PRK10037 cell division protein; Provisional
Probab=94.17 E-value=0.076 Score=33.07 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=31.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 68870687414889999999996302232364116
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSL 178 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSl 178 (266)
+.|.+.|-|+|||+++-|+|...++.|++|+.+-+
T Consensus 4 ial~s~kGGVGkTTltAnLA~aL~~~g~~VlaID~ 38 (250)
T PRK10037 4 LGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDA 38 (250)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99960788876899999999999977991899957
No 251
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.14 E-value=0.55 Score=27.10 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------C----------------CCEEEECCC------
Q ss_conf 377777655301683688706874148899999999963-02------2----------------323641167------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------G----------------HGVAFFSLE------ 179 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g----------------~~Vl~fSlE------ 179 (266)
...|+++.--+.+|+.+.|.|..|.|||+|.--++--.- .+ | +.+.|..-+
T Consensus 17 ~~al~~isl~i~~Ge~~~iiG~sGsGKTTll~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~~Ig~v~Q~~~L~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCEEEECCCCCCCCC
T ss_conf 99985628998699899999999986999999996699999649999999988799899999865047898667521556
Q ss_pred CCHHH---------------HHHHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-
Q ss_conf 53489---------------9999999630223234785-550178899899999999999997299547479988989-
Q gi|254781149|r 180 MDREK---------------LGARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM- 242 (266)
Q Consensus 180 Ms~~q---------------l~~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~- 242 (266)
|+..| .-.|+--.+..+ +++. .+-.-++|+..+.+++.-|..-+.+-++.+-|.|.-.++
T Consensus 97 ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~l---~l~~~~~~~~~~LSGG~kQRv~iAraL~~~P~llllDEPTs~LD~ 173 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERV---GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173 (218)
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 43999999999984999899999999876767---937887388763899999999999998559999998188876899
Q ss_pred ----HHHHHHHHHHHH
Q ss_conf ----999999999999
Q gi|254781149|r 243 ----EFVHVANGLRNK 254 (266)
Q Consensus 243 ----~ira~aR~~k~k 254 (266)
+|....++++++
T Consensus 174 ~~~~~i~~~l~~l~~~ 189 (218)
T cd03255 174 ETGKEVMELLRELNKE 189 (218)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999996
No 252
>PTZ00243 ABC transporter; Provisional
Probab=94.13 E-value=0.24 Score=29.66 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=14.7
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 01683688706874148899999999
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTAL 164 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~ 164 (266)
.+||+-|-|-||+|.|||++.+-+-+
T Consensus 1333 I~pGEKVGIVGRTGSGKSSLi~aLfR 1358 (1560)
T PTZ00243 1333 IAPREKVGIVGRTGSGKSTLLLTFMR 1358 (1560)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 88999999987987439999999970
No 253
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.12 E-value=0.069 Score=33.39 Aligned_cols=33 Identities=27% Similarity=0.255 Sum_probs=23.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 68870687414889999999996302232364116
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSL 178 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSl 178 (266)
+|-|+|.+|.|||+||..++...- +..|.++|+
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l~--~~~v~~i~~ 33 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG--NPKVVIISQ 33 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEEC
T ss_conf 989889998859999999999809--998589978
No 254
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.11 E-value=0.19 Score=30.31 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=71.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCCC-------------E-EE-------------
Q ss_conf 77777655301683688706874148899999999963-0------2232-------------3-64-------------
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGHG-------------V-AF------------- 175 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~~-------------V-l~------------- 175 (266)
+.|+...-.+.+|+.+.|.|.+|.|||++...++-=.- . .|.+ | .+
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV 97 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTV 97 (235)
T ss_pred EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHCCEEEEEECHHHCEECCCH
T ss_conf 47625338987898999988999889999999537676889848877813310021887631216999971126104758
Q ss_pred --------ECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf --------1167534899999999630223234785550178899899999999999997299547479988989
Q gi|254781149|r 176 --------FSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 176 --------fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
-.+-++.+++-.|.-..+..+......... -..|+..|.+++.-|.--..+-.+.|-|.|.-.++
T Consensus 98 ~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~--p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD 170 (235)
T COG1122 98 EDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP--PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170 (235)
T ss_pred HHHHHCCHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCC--CCCCCCCCEEEHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 88875357444999899999999999981861112388--11069731665886688871898999749988989
No 255
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.56 Score=27.05 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=66.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-HHCCC--------------------------C----------
Q ss_conf 7777765530168368870687414889999999996-30223--------------------------2----------
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM-AMSGH--------------------------G---------- 172 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~-a~~g~--------------------------~---------- 172 (266)
+.|+++.--+.+|+.+.|-|+.|.|||++.--++--. ..+|. |
T Consensus 17 ~vL~~inl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~N 96 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMEN 96 (229)
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCEECCCCHHHH
T ss_conf 08746299987999999999999809999999966866787389999999541899999632899903898757459998
Q ss_pred EEEECCCCCHHHHHHHHHHHHHCCCC--C----CCCHHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 36411675348999999996302232--3----4785550178-8998999999999999972995474799889899
Q gi|254781149|r 173 VAFFSLEMDREKLGARALSNLLYPSS--S----RIPYLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 173 Vl~fSlEMs~~ql~~R~ls~~t~~~~--s----~I~~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
+.|+. +...++-....+... ++.. . +++..--..| .|+..+..++.=|-.-+.+.|++|-|.|.-.++.
T Consensus 97 i~~~~-~~~~~~~~~~~l~~~-~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qri~lARal~~~~~illlDEpts~LD~ 172 (229)
T cd03254 97 IRLGR-PNATDEEVIEAAKEA-GAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDT 172 (229)
T ss_pred HHCCC-CCCCHHHHHHHHHHH-CCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 40589-999999999999984-00458875846457861578644999999999999999518998999897778998
No 256
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.09 E-value=0.39 Score=28.12 Aligned_cols=124 Identities=18% Similarity=0.124 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCCC----------EEEE----C--CCCCHHH
Q ss_conf 1377777655301683688706874148899999999963-0------2232----------3641----1--6753489
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGHG----------VAFF----S--LEMDREK 184 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~~----------Vl~f----S--lEMs~~q 184 (266)
|...|+++---+++|+.+.|.|.-|.|||++.--++--.. . .|++ +.|. + -.|+..|
T Consensus 12 ~~~al~~vs~~i~~Gei~~iiGpnGaGKSTl~~~i~Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 99998461779889989999999997399999999759998970899999998889977878699906986588981999
Q ss_pred HHH---------------HHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----H
Q ss_conf 999---------------9999630223234785-550178899899999999999997299547479988989-----9
Q gi|254781149|r 185 LGA---------------RALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----E 243 (266)
Q Consensus 185 l~~---------------R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ 243 (266)
-.. |....+.. -++.. .+-.-+.|+-.+.+++.-|..-+.+-++.|-|.|.-.++ +
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~---~~l~~~~~~~~~~LSGG~kQrv~iAraL~~~P~illlDEPt~gLD~~~~~~ 168 (213)
T cd03259 92 NIAFGLKLRGVPKAEIRARVRELLEL---VGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168 (213)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH---CCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH
T ss_conf 99889987599989999999999998---699647637703389899999999876227999999839864379999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254781149|r 244 FVHVANGLRNK 254 (266)
Q Consensus 244 ira~aR~~k~k 254 (266)
|..-.+++.++
T Consensus 169 i~~li~~l~~~ 179 (213)
T cd03259 169 LREELKELQRE 179 (213)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999996
No 257
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.27 Score=29.22 Aligned_cols=125 Identities=15% Similarity=0.091 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CC----------------CCE-EEE--------
Q ss_conf 3777776553016836887068741488999999999630-------22----------------323-641--------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SG----------------HGV-AFF-------- 176 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g----------------~~V-l~f-------- 176 (266)
...||++---+.+|+.+.|-|..|+|||++.-.|+--.-- .| +.+ ++|
T Consensus 37 ~~aL~~vsl~i~~GE~~~ivG~SGsGKSTLLr~i~GL~~p~~G~I~~~G~~i~~~~~~~l~~~r~~~igmVFQ~~aL~P~ 116 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116 (269)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 27977747588899999999899848999999997599999759999999999999899988525646999615754767
Q ss_pred ---------CC---CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH--
Q ss_conf ---------16---7534899999999630223234785550178899899999999999997299547479988989--
Q gi|254781149|r 177 ---------SL---EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-- 242 (266)
Q Consensus 177 ---------Sl---EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-- 242 (266)
.| -|+..+...|....+..+..+.. .+-+-++|+-.+..|+.-|-.-..+-.+.+-|.|.-.++
T Consensus 117 ltV~eNV~~~L~~~~~~~~e~~~rv~e~L~~vgL~~~--~~~~P~qLSGGq~QRVaIARALa~~P~iLLlDEPtsaLD~~ 194 (269)
T cd03294 117 RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGW--EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL 194 (269)
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH--HHCCHHHHCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 8799998688885289978999999999986798677--75696784948888999999986399899975875425999
Q ss_pred ---HHHHHHHHHHHHH
Q ss_conf ---9999999999994
Q gi|254781149|r 243 ---EFVHVANGLRNKH 255 (266)
Q Consensus 243 ---~ira~aR~~k~k~ 255 (266)
+|+...+++.+++
T Consensus 195 ~~~~i~~~l~~l~~~~ 210 (269)
T cd03294 195 IRREMQDELLRLQAEL 210 (269)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999974
No 258
>PRK05642 DNA replication initiation factor; Validated
Probab=94.06 E-value=0.57 Score=27.00 Aligned_cols=38 Identities=16% Similarity=0.383 Sum_probs=31.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 36887068741488999999999630223236411675
Q gi|254781149|r 143 ELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180 (266)
Q Consensus 143 ~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEM 180 (266)
+++.|=|.+|.|||-+..-++..+...++++.|.+++-
T Consensus 46 ~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~ 83 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 83899889999889999999999980799679978999
No 259
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=94.01 E-value=0.077 Score=33.03 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 851113777776553016836887068741488999999999630223236411675
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEM 180 (266)
-+.||+..+|.++- +.+|+=..|=|-++.|||+++++...|...++.-+.|...--
T Consensus 146 pL~TGIkaID~l~P-iGrGQR~lI~Gd~gvGKTtl~~d~Iinqk~~~vicVyvaIGe 201 (501)
T CHL00059 146 PLQTGLIAIDSMIP-IGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIGQ 201 (501)
T ss_pred CCCCCCEEEECCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 23234211100367-667756677557884477999999985246884899998556
No 260
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=94.00 E-value=0.067 Score=33.45 Aligned_cols=77 Identities=22% Similarity=0.197 Sum_probs=45.9
Q ss_pred HHCCCC-EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHH-CCCCCCCHHH
Q ss_conf 301683-68870687414889999999996302232364116753489999999963022323478555-0178899899
Q gi|254781149|r 138 GVQLRE-LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLN-LIRGEINQEQ 215 (266)
Q Consensus 138 G~~~g~-LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~-l~~g~l~~~e 215 (266)
|=.+|- .+.+-|.||+|||++|-.||... |..-.=|||= +--+.+.|..++ -+-|-|.
T Consensus 445 ~~~~GpqIlClvGPPGVGKTSlg~SIA~AL---nRkFvR~SlG--------------G~~DeAEIrGHRRTYvGAMP--- 504 (941)
T TIGR00763 445 GKMKGPQILCLVGPPGVGKTSLGKSIAKAL---NRKFVRFSLG--------------GVRDEAEIRGHRRTYVGAMP--- 504 (941)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHH---CCEEEEEEEC--------------CCEEHHHCCCCCCCCCCCCH---
T ss_conf 788887678720726954222789999996---8804999526--------------72203112786432034672---
Q ss_pred HHHHHHHHHHHH-HCCCEEEC
Q ss_conf 999999999997-29954747
Q gi|254781149|r 216 YRISQGICEKLQ-DFPLIIDD 235 (266)
Q Consensus 216 ~~~i~~a~~~l~-~~pl~IdD 235 (266)
.|+.+++.+.+ .-|++.=|
T Consensus 505 -GriiQ~lk~~~t~NPl~LlD 524 (941)
T TIGR00763 505 -GRIIQGLKKAKTKNPLILLD 524 (941)
T ss_pred -HHHHHHHHHCCCCCCEEEEE
T ss_conf -57899987604158806862
No 261
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.00 E-value=0.48 Score=27.52 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCCC------------E-EEEC-----CCC--
Q ss_conf 1377777655301683688706874148899999999963-0------2232------------3-6411-----675--
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGHG------------V-AFFS-----LEM-- 180 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~~------------V-l~fS-----lEM-- 180 (266)
|...||++.--+.+|+++.|-|..|+|||++.--++-=.- . .|.. + .+|. -.|
T Consensus 13 ~~~al~~vsl~i~~Ge~~~ilGpSG~GKSTllr~i~gl~~p~~G~I~i~g~~i~~~~~~~lrr~ig~vfQ~~~Lfp~ltV 92 (242)
T cd03295 13 GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred CCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCCH
T ss_conf 78898302768869989999999995699999999759999815999999999999978973886799179975888829
Q ss_pred -------------CHHHHHHHHHHHHHCCCCCCCCHHHC---CCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH--
Q ss_conf -------------34899999999630223234785550---178899899999999999997299547479988989--
Q gi|254781149|r 181 -------------DREKLGARALSNLLYPSSSRIPYLNL---IRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-- 242 (266)
Q Consensus 181 -------------s~~ql~~R~ls~~t~~~~s~I~~~~l---~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-- 242 (266)
+..+.-.|....+.- -+++...+ +-++|+..+.+|+.-|-.-+.+-.+.+-|.|.-.++
T Consensus 93 ~eNi~~~~~~~~~~~~~~~~rv~ell~~---v~L~~~~~~~~~p~~LSGGqkQRvaiARAl~~~P~ilLlDEP~saLD~~ 169 (242)
T cd03295 93 EENIALVPKLLKWPKEKIRERADELLAL---VGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPI 169 (242)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 9999999997599999999999999987---4999301100795668999999999999996299999981876546989
Q ss_pred ---HHHHHHHHHHHH
Q ss_conf ---999999999999
Q gi|254781149|r 243 ---EFVHVANGLRNK 254 (266)
Q Consensus 243 ---~ira~aR~~k~k 254 (266)
+|+...++++++
T Consensus 170 ~~~~i~~~l~~l~~~ 184 (242)
T cd03295 170 TRDQLQEEFKRLQQE 184 (242)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999997
No 262
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.99 E-value=0.38 Score=28.23 Aligned_cols=125 Identities=16% Similarity=0.135 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCC----------CEEE---------------
Q ss_conf 1377777655301683688706874148899999999963-0------223----------2364---------------
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGH----------GVAF--------------- 175 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~----------~Vl~--------------- 175 (266)
+.+.||.+---+.+|+++.|-|..|.|||++.--++-=.- . .|+ .+.|
T Consensus 14 ~~~~l~~is~~v~~Ge~~~iiGpSGsGKSTll~~i~Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~Lfp~ltV~e 93 (239)
T cd03296 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFD 93 (239)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHH
T ss_conf 98998663869889989999999997799999999769999863999999999999965677679817821067996999
Q ss_pred ---ECC-------CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH---
Q ss_conf ---116-------7534899999999630223234785550178899899999999999997299547479988989---
Q gi|254781149|r 176 ---FSL-------EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM--- 242 (266)
Q Consensus 176 ---fSl-------EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~--- 242 (266)
|.| .++++++-.|....+--+..+.. .+-+-++|+..+.+++.-|-.-+.+-.+.+-|.|.-.++
T Consensus 94 Ni~~~l~~~~~~~~~~~~e~~~rv~~~l~~v~l~~~--~~~~p~eLSGGq~QRVaiARAl~~~P~vlllDEP~s~LD~~~ 171 (239)
T cd03296 94 NVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL--ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171 (239)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHH--HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHH
T ss_conf 998799733545699899999999999865499767--748966699989899999998764999899738866469999
Q ss_pred --HHHHHHHHHHHH
Q ss_conf --999999999999
Q gi|254781149|r 243 --EFVHVANGLRNK 254 (266)
Q Consensus 243 --~ira~aR~~k~k 254 (266)
+|+...+++.++
T Consensus 172 ~~~i~~~l~~l~~e 185 (239)
T cd03296 172 RKELRRWLRRLHDE 185 (239)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999998
No 263
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.59 Score=26.90 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=57.0
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC--CCCEEEE-CCCCC-HHHHHHHHHHHHHCCCCCCCCHHHCC
Q ss_conf 77765530168368870687414889999999996302--2323641-16753-48999999996302232347855501
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMS--GHGVAFF-SLEMD-REKLGARALSNLLYPSSSRIPYLNLI 207 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~--g~~Vl~f-SlEMs-~~ql~~R~ls~~t~~~~s~I~~~~l~ 207 (266)
|...+.|..|.+ ++|-|+||.|||+.+..++...-.. +..+.|. -.+++ ..++..+++.... ++|..
T Consensus 33 l~~~~~~~~p~n-~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~-----~~p~~--- 103 (366)
T COG1474 33 LAPALRGERPSN-IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG-----KVPLT--- 103 (366)
T ss_pred HHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHC-----CCCCC---
T ss_conf 999855899860-799889998732899999999973315675799951307878799999999826-----89976---
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 7889989999999999999729954747
Q gi|254781149|r 208 RGEINQEQYRISQGICEKLQDFPLIIDD 235 (266)
Q Consensus 208 ~g~l~~~e~~~i~~a~~~l~~~pl~IdD 235 (266)
|.-+.+-.+++.+.........+.|-|
T Consensus 104 -g~~~~~~~~~l~~~~~~~~~~~IvvLD 130 (366)
T COG1474 104 -GDSSLEILKRLYDNLSKKGKTVIVILD 130 (366)
T ss_pred -CCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf -763268999999977741875999976
No 264
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.96 E-value=0.39 Score=28.14 Aligned_cols=121 Identities=12% Similarity=0.020 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH------------HCC----------------------CCEE
Q ss_conf 377777655301683688706874148899999999963------------022----------------------3236
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA------------MSG----------------------HGVA 174 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a------------~~g----------------------~~Vl 174 (266)
...|+++.--+.+|+.+.|-|..|.|||+|.-.++.=.- ..| .|.
T Consensus 13 ~~~L~~isl~i~~Ge~~~iiG~SGsGKSTll~~i~gL~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~R~~ig~VfQ~~~- 91 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN- 91 (227)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCEECCCCCCCHHHHHHCCEEECCCCC-
T ss_conf 9888340678879989999999998199999999744502689981469999999998899587889628268764776-
Q ss_pred EECC--------------CCCHHHHHHHHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 4116--------------75348999999996302232347855501---788998999999999999972995474799
Q gi|254781149|r 175 FFSL--------------EMDREKLGARALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRP 237 (266)
Q Consensus 175 ~fSl--------------EMs~~ql~~R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~ 237 (266)
+|.+ ..+.+++-.|+...+.. -+++..-.+ -..|+-.+.+|+.-|-.-+.+-++-+-|.|
T Consensus 92 lf~~TV~eNi~~~l~~~~~~~~~~~~~~v~~~L~~---vgL~~~~~~~~~p~~LSGGq~QRvaIArAL~~~P~iLllDEP 168 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRK---AALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEP 168 (227)
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH---CCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 67780999999999983899999999999999987---799758844568022899999999999998359999996898
Q ss_pred CCCHH-----HHHHHHHHHHH
Q ss_conf 88989-----99999999999
Q gi|254781149|r 238 SPGIM-----EFVHVANGLRN 253 (266)
Q Consensus 238 ~~ti~-----~ira~aR~~k~ 253 (266)
.-.++ +|..-.+++++
T Consensus 169 Ts~LD~~~~~~i~~li~~l~~ 189 (227)
T cd03260 169 TSALDPISTAKIEELIAELKK 189 (227)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 765798999999999999966
No 265
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=93.92 E-value=0.12 Score=31.81 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=34.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCH
Q ss_conf 683688706874148899999999963022323641167534
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDR 182 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~ 182 (266)
+.+.+=|-|-||.|||+|.-.+..+.-++|+.|.+.-..=|.
T Consensus 37 nA~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~S 78 (333)
T TIGR00750 37 NAHVVGITGVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSS 78 (333)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 907876646888857779999989997659768999887975
No 266
>KOG1806 consensus
Probab=93.89 E-value=0.17 Score=30.65 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC--CCCEEEECCC-CCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 137777765530168368870687414889999999996302--2323641167-5348999999996302232347855
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMS--GHGVAFFSLE-MDREKLGARALSNLLYPSSSRIPYL 204 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~--g~~Vl~fSlE-Ms~~ql~~R~ls~~t~~~~s~I~~~ 204 (266)
-+..+.....|.+|| |+.++|.||.|||..+.++..+..-+ ....++.+-+ ..-.++...+.+. +++..
T Consensus 740 t~~qveai~sg~qpg-ltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~-------d~d~r 811 (1320)
T KOG1806 740 TPTQVEAILSGMQPG-LTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMAL-------DVDER 811 (1320)
T ss_pred CHHHHHHHHHCCCCC-CEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHC-------CCCHH
T ss_conf 889999988347877-5463069999974302445445651698762489985231256787777861-------65326
Q ss_pred HCCCCCCCHHHHHHH
Q ss_conf 501788998999999
Q gi|254781149|r 205 NLIRGEINQEQYRIS 219 (266)
Q Consensus 205 ~l~~g~l~~~e~~~i 219 (266)
.+-+-.--++||++.
T Consensus 812 hLlrlg~ge~eletd 826 (1320)
T KOG1806 812 HLLRLGHGEEELETD 826 (1320)
T ss_pred HHHHHCCCHHHHHCC
T ss_conf 677733437766411
No 267
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.84 E-value=0.086 Score=32.69 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 85111377777655301683688706874148899999999963
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a 167 (266)
-+.||++.+|-++. +.+|+=+-|=|-+|+|||++...++.|+.
T Consensus 141 ~L~TGIraID~l~p-igrGQRigIfagsGvGKs~Ll~~i~r~~~ 183 (441)
T PRK08927 141 PLDLGVRALNTFLT-CCRGQRLGIFAGSGVGKSVLLSMLARNTD 183 (441)
T ss_pred CCCCCHHHHHHHHH-HCCCCEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 31036015653300-20364666316899987899999986416
No 268
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.84 E-value=0.56 Score=27.01 Aligned_cols=91 Identities=18% Similarity=0.182 Sum_probs=50.8
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 88706874148899999999963022323641167534899999999630223234785550178899899999999999
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICE 224 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~ 224 (266)
+=+-|.||.|||++|-.+.......+.++.++. .+++-. .++. ...+.. .++ .+...++...+.
T Consensus 2 iW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lD----GD~iR~-~l~~-------~lgys~--~~R--~~n~~r~~~lak 65 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD----GDNVRH-GLNK-------DLGFSR--EDR--EENIRRIAEVAK 65 (149)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC----CHHHHH-HHCC-------CCCCCH--HHH--HHHHHHHHHHHH
T ss_conf 898799999999999999999998699759977----488997-7365-------559887--889--999999999999
Q ss_pred HHHHCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 997299547479988989999999999
Q gi|254781149|r 225 KLQDFPLIIDDRPSPGIMEFVHVANGL 251 (266)
Q Consensus 225 ~l~~~pl~IdD~~~~ti~~ira~aR~~ 251 (266)
.+.+..+.+--..--.-.++|..+|+.
T Consensus 66 ~l~~qg~~VIvs~isp~~~~R~~~r~~ 92 (149)
T cd02027 66 LLADAGLIVIAAFISPYREDREAARKI 92 (149)
T ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 998379827884167889999999987
No 269
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.63 Score=26.70 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH------------------------HCCCCEEEEC----
Q ss_conf 111377777655301683688706874148899999999963------------------------0223236411----
Q gi|254781149|r 126 KWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA------------------------MSGHGVAFFS---- 177 (266)
Q Consensus 126 ~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a------------------------~~g~~Vl~fS---- 177 (266)
+.|.+.|+++---+.+|+++.|-|..|.|||++.-.++.-.- +++..++|-+
T Consensus 11 ~~g~~~L~~isl~i~~Ge~~~iiGpsGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~~l~~~R~~ig~vfQ~~~l~ 90 (241)
T cd03256 11 PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred CCCCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEECCCCCCC
T ss_conf 97988997838899999899999999833999999997499998559999999989899899999864918980799789
Q ss_pred CCCCHHHHH-----------------------HHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 675348999-----------------------99999630223234785-550178899899999999999997299547
Q gi|254781149|r 178 LEMDREKLG-----------------------ARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLII 233 (266)
Q Consensus 178 lEMs~~ql~-----------------------~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~I 233 (266)
..|+..+.. .|....+..+ ++.. .+-+-.+|+-.|.+|+.-|-.-+.+-++.+
T Consensus 91 ~~ltV~enV~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v---gl~~~~~~~~~~LSGGq~QRVaIARAL~~~P~ill 167 (241)
T cd03256 91 ERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV---GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLIL 167 (241)
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHC---CCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 988999998636541330557761799599999999999976---99778767844148028999999999855999899
Q ss_pred ECCCCCCHH-----HHHHHHHHHHHH
Q ss_conf 479988989-----999999999999
Q gi|254781149|r 234 DDRPSPGIM-----EFVHVANGLRNK 254 (266)
Q Consensus 234 dD~~~~ti~-----~ira~aR~~k~k 254 (266)
-|.|.-.++ +|..-.+++.++
T Consensus 168 ~DEPts~LD~~~~~~i~~ll~~l~~~ 193 (241)
T cd03256 168 ADEPVASLDPASSRQVMDLLKRINRE 193 (241)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 62876658999999999999999985
No 270
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.81 E-value=0.16 Score=30.76 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=28.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHH--CCCCEEEECCC---CCHHHHHHH
Q ss_conf 6887068741488999999999630--22323641167---534899999
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAM--SGHGVAFFSLE---MDREKLGAR 188 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~--~g~~Vl~fSlE---Ms~~ql~~R 188 (266)
+|-|||-||.|||+||-.+...... .+..|.++|+. .+..++..+
T Consensus 1 IIGIaG~sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f~~~~~~l~~~ 50 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIER 50 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHH
T ss_conf 98978899877999999999986002699948999787875785228886
No 271
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=93.78 E-value=0.64 Score=26.65 Aligned_cols=109 Identities=16% Similarity=0.059 Sum_probs=65.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC---------------CEE-EE-----CC--CC
Q ss_conf 77776553016836887068741488999999999630-------223---------------236-41-----16--75
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH---------------GVA-FF-----SL--EM 180 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~---------------~Vl-~f-----Sl--EM 180 (266)
.+|++---+.+|+.+-|.|..|.|||+++-.++--..- .|+ .+. +| || .|
T Consensus 339 av~~vsf~i~~GE~l~lvG~sGsGKSTl~r~l~gl~~~~~G~I~~~G~~i~~~~~~~~~~~r~~i~~VfQdp~~sl~p~~ 418 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQ 418 (623)
T ss_pred EEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHCCEEEEECCCHHHCCCCC
T ss_conf 65234003589958999767876689999998566466786799999997758867777654055689637134248004
Q ss_pred CH----------------HHHHHHHHHHHHCCCCCCCCHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 34----------------8999999996302232347855501--78899899999999999997299547479988989
Q gi|254781149|r 181 DR----------------EKLGARALSNLLYPSSSRIPYLNLI--RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 181 s~----------------~ql~~R~ls~~t~~~~s~I~~~~l~--~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
+- ++...|+...+. .-+++..... -++|+-.+..++.-|..-+.+-.+.|.|.|.-.++
T Consensus 419 ~v~~~i~e~l~~~~~~~~~~~~~rv~~ll~---~vgL~~~~~~r~P~eLSGGqrQRv~IAraL~~~P~lLI~DEPTs~LD 495 (623)
T PRK10261 419 TVGDSIMEPLRVHGLLPGKAAAARVAWLLE---RVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---HCCCCHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 599999999997389988999999999998---73998678368820189999999999999996999999968866679
No 272
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=93.77 E-value=0.062 Score=33.69 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=29.5
Q ss_pred EEEEE---CCCCHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 68870---68741488999999999630223236411
Q gi|254781149|r 144 LILIG---ARPSMGKTTFALSTALHMAMSGHGVAFFS 177 (266)
Q Consensus 144 Livia---aRP~mGKTa~alnia~~~a~~g~~Vl~fS 177 (266)
.+||| =.-|+|||+.++|+|...|.+|+.||+.-
T Consensus 106 ~~VIAVaN~KGGVGKTTTavnLA~~LAl~G~RVL~ID 142 (387)
T PHA02519 106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 5289986168877699999999999997699689995
No 273
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=93.71 E-value=0.22 Score=29.82 Aligned_cols=114 Identities=12% Similarity=0.049 Sum_probs=69.8
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC-----C--CEEEECCC-------CCHH-------------
Q ss_conf 777655301683688706874148899999999963-022-----3--23641167-------5348-------------
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG-----H--GVAFFSLE-------MDRE------------- 183 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g-----~--~Vl~fSlE-------Ms~~------------- 183 (266)
|+++.--+++|+-+-|.|.-|.|||+|+--++-... ..| . .+.||+-+ ++-.
T Consensus 340 l~~vs~~i~~Ge~iaivG~NGsGKSTLlk~l~G~~~p~~G~i~~g~~v~igy~~Q~~~~l~~~~tv~e~v~~~~~~~~~~ 419 (556)
T PRK11819 340 IDDLSFKLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVG 419 (556)
T ss_pred EEEECCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCHHHHHHCHHHHHHHH
T ss_conf 87640235788247898898775889999983865688855998996650322120542697684999874526665421
Q ss_pred --HHHHH-HHHHHHCCCCCCCCHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCEEECCCC--CCHHHHHHHHHHH
Q ss_conf --99999-9996302232347855501--7889989999999999999729954747998--8989999999999
Q gi|254781149|r 184 --KLGAR-ALSNLLYPSSSRIPYLNLI--RGEINQEQYRISQGICEKLQDFPLIIDDRPS--PGIMEFVHVANGL 251 (266)
Q Consensus 184 --ql~~R-~ls~~t~~~~s~I~~~~l~--~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~--~ti~~ira~aR~~ 251 (266)
+...| +++. -.++..... -+.||-.|..|+.=|.--+.+.++.|-|.|. +.+.-+.+-...+
T Consensus 420 ~~e~~~r~~L~~------f~~~~~~~~~~v~~LSGGek~Rv~lA~~l~~~p~lLiLDEPTn~LDi~s~e~Le~aL 488 (556)
T PRK11819 420 NREIPSRAYVGR------FNFKGGDQQKKVGVLSGGERNRLHLAKTLKSGGNVLLLDEPTNDLDVETLRALEDAL 488 (556)
T ss_pred HHHHHHHHHHHH------HCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 677899999987------078724551970318899999999999996298989992977567999999999999
No 274
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=93.70 E-value=0.062 Score=33.72 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 68741488999999999630223236411
Q gi|254781149|r 149 ARPSMGKTTFALSTALHMAMSGHGVAFFS 177 (266)
Q Consensus 149 aRP~mGKTa~alnia~~~a~~g~~Vl~fS 177 (266)
=.-|+|||+.++|+|...|.+|+.|++.-
T Consensus 114 qKGGvGKTTTavnLA~~LAl~G~RVLlID 142 (388)
T PRK13705 114 HKGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 78885599999999999997799089995
No 275
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.69 E-value=0.2 Score=30.16 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=65.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC------CC------------E-------EEECC-----
Q ss_conf 77777655301683688706874148899999999963-022------32------------3-------64116-----
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG------HG------------V-------AFFSL----- 178 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g------~~------------V-------l~fSl----- 178 (266)
+.|+++.--+.||+.+.|-|+.|.|||+++--+..-.. .+| .+ + .+|+-
T Consensus 28 ~vL~~is~~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eN 107 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDN 107 (226)
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHCEEEEECCCEECCCCHHHH
T ss_conf 43745389982999999999999849999999964546788789999999344899999732699924795767735666
Q ss_pred -----C-CCHHHHHHHHHHHHHCCC--CC----CCCHHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf -----7-534899999999630223--23----4785550178-89989999999999999729954747998898999
Q gi|254781149|r 179 -----E-MDREKLGARALSNLLYPS--SS----RIPYLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 179 -----E-Ms~~ql~~R~ls~~t~~~--~s----~I~~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
+ -+.+++..-+ ...++. .. +.+..--..| .|+..++.++.=|-.-+.+.|+.|-|.|.-.++..
T Consensus 108 i~~g~~~~~~~~i~~~~--~~~~~~~~i~~l~~gl~t~i~~~g~~LSgGqkQRialARal~~~p~ililDEptSaLD~~ 184 (226)
T cd03248 108 IAYGLQSCSFECVKEAA--QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184 (226)
T ss_pred HHCCCCCCCHHHHHHHH--HHHCHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 63278999999999999--996614677626366640616848876999999999999997599999997976688999
No 276
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.68 E-value=0.66 Score=26.54 Aligned_cols=123 Identities=14% Similarity=0.185 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH----------HCCC-----------------CEEE-EC--
Q ss_conf 1377777655301683688706874148899999999963----------0223-----------------2364-11--
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA----------MSGH-----------------GVAF-FS-- 177 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a----------~~g~-----------------~Vl~-fS-- 177 (266)
+.+.|+++---+.+|+++-|-|.-|.|||++.-.++--.. ..|+ .+.| |.
T Consensus 16 ~~~aL~~isl~i~~GE~~~iiGpNGaGKSTLlk~i~Gll~~d~~~~g~i~~~g~~i~~~~~~~~~~~~~r~~ig~v~Q~~ 95 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCEEEECCCC
T ss_conf 98677452789879989999989996099999999756777989841799889986657633557898645769974787
Q ss_pred ---CCCCHHHHH-----------------------HHHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHH
Q ss_conf ---675348999-----------------------999996302232347855501---788998999999999999972
Q gi|254781149|r 178 ---LEMDREKLG-----------------------ARALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQD 228 (266)
Q Consensus 178 ---lEMs~~ql~-----------------------~R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~ 228 (266)
-.|+..|-. .|....+ ..+....+. -+.|+-.+..++.-|..-+.+
T Consensus 96 ~l~~~~tV~env~~g~l~~~~~~~~~~~~~~~~~~~~~~~~L-----~~vgl~~~~~~~~~~LSGGqkQRv~IArAL~~~ 170 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL-----TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQ 170 (262)
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHH-----HHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCC
T ss_conf 679988799998546512673033330437599999999999-----877996565098534899999999999999719
Q ss_pred CCCEEECCCCCCHH-----HHHHHHHHHHHHH
Q ss_conf 99547479988989-----9999999999994
Q gi|254781149|r 229 FPLIIDDRPSPGIM-----EFVHVANGLRNKH 255 (266)
Q Consensus 229 ~pl~IdD~~~~ti~-----~ira~aR~~k~k~ 255 (266)
-++.+-|.|.-.++ +|....|.+.+++
T Consensus 171 P~iLllDEPta~LDp~~~~~i~~~l~~l~~~~ 202 (262)
T PRK09984 171 AKVILADEPIASLDPESARIVMDTLRDINQND 202 (262)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999838867799999999999999999854
No 277
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.66 E-value=0.66 Score=26.53 Aligned_cols=113 Identities=14% Similarity=0.064 Sum_probs=67.7
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CCC--------EEE------ECCCCCHHHHHHH
Q ss_conf 77777655301683688706874148899999999963-02------232--------364------1167534899999
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GHG--------VAF------FSLEMDREKLGAR 188 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~~--------Vl~------fSlEMs~~ql~~R 188 (266)
+-|+++.--+.+|+++.|-|.-|.|||++.--++--.. .+ |.+ +.| +...|+-.+...-
T Consensus 16 ~il~~vsf~i~~Gei~~l~G~NGaGKTTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~ 95 (206)
T PRK13539 16 VVFSGLSFTLAAGEALVLTGPNGSGKTTLLRLLAGLLPPAAGTIKLDGGIQDSPVAEACHYLGHRNAMKPALTVAENLEF 95 (206)
T ss_pred EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCEECCCCCCCCCCCCHHHHHHH
T ss_conf 99815078986994999989999989999999958878885189999977666638770451641336778799999999
Q ss_pred HHHHHHCCCC-------CCCCHH---HCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 9996302232-------347855---501788998999999999999972995474799889899
Q gi|254781149|r 189 ALSNLLYPSS-------SRIPYL---NLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 189 ~ls~~t~~~~-------s~I~~~---~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
. +...+... ..+... +-+-+.||..+.+++.=|.--+.+.+++|=|.|.-.++.
T Consensus 96 ~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~la~al~~~p~vllLDEPtsgLD~ 159 (206)
T PRK13539 96 W-AAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWLLDEPTAALDS 159 (206)
T ss_pred H-HHHCCCCHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 9-987599789999999984994464788124999999999999999869898999799777899
No 278
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.65 E-value=0.12 Score=31.64 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCH
Q ss_conf 785111377777655301683688706874148899999999963022323641167534
Q gi|254781149|r 123 PDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDR 182 (266)
Q Consensus 123 ~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~ 182 (266)
.-+.||+..+|.++- ..+|+=..|-|-++.|||+++++...|..-.+--+.|...=-..
T Consensus 144 epL~TGIkaID~liP-IGrGQRelIigdrgtGKTtla~dtIinqk~~~vicVyvaIGqr~ 202 (497)
T TIGR03324 144 VPLQTGLKVIDALIP-IGRGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRA 202 (497)
T ss_pred CCCCCCHHHHHCCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEH
T ss_conf 710024145542465-56774677645888880088999997045667189999732507
No 279
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.60 E-value=0.68 Score=26.44 Aligned_cols=108 Identities=12% Similarity=0.111 Sum_probs=58.5
Q ss_pred CHHHH-HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH------CCC---CEEEEC-------------CCC--C
Q ss_conf 11377-7776553016836887068741488999999999630------223---236411-------------675--3
Q gi|254781149|r 127 WGLQS-VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM------SGH---GVAFFS-------------LEM--D 181 (266)
Q Consensus 127 TG~~~-LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~------~g~---~Vl~fS-------------lEM--s 181 (266)
-||.. +|+++--|.+| ++.|-|+.|.|||++.--++.-... .|. .+.|.+ +-. .
T Consensus 7 ~~~k~~~d~vsl~ip~G-itaIvGpsGsGKSTLl~~i~~~lg~~~~~~l~g~~~~d~if~~~~~~~~~~~~~v~~~~~~~ 85 (197)
T cd03278 7 KGFKSFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNS 85 (197)
T ss_pred ECCCCCCCCEEEECCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCEEEECCCCCCCCCCEEEEEEECCCC
T ss_conf 28700168769973898-28999999998899999999874777612532662212770462014445636799871685
Q ss_pred HHH---H----HHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHH--HH--HHHCCCEEECCCCCCHHH
Q ss_conf 489---9----99999963022323478555017889989999999999--99--972995474799889899
Q gi|254781149|r 182 REK---L----GARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGIC--EK--LQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 182 ~~q---l----~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~--~~--l~~~pl~IdD~~~~ti~~ 243 (266)
..+ + ..+++.. .+-...+ -+.|+-.|+.++.-|. .. ++..||+|-|.|.-.++.
T Consensus 86 ~~~~~~~~~~~i~~il~~------~g~~~~~--~~~LSGGqkQRvAiAr~~A~~~~~p~~iliLDEPTs~LD~ 150 (197)
T cd03278 86 DGRYSIISQGDVSEIIEA------PGKKVQR--LSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDD 150 (197)
T ss_pred CCHHHHHHHHHHHHHHHC------CCCCCCC--CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCH
T ss_conf 134677753569999862------6844464--4438878999999999999983499978997178553898
No 280
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.59 E-value=0.68 Score=26.44 Aligned_cols=123 Identities=14% Similarity=0.172 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC----------------------CCE-EEEC-------
Q ss_conf 377777655301683688706874148899999999963-022----------------------323-6411-------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG----------------------HGV-AFFS------- 177 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g----------------------~~V-l~fS------- 177 (266)
.+.|+++---+.+|+++.|-|..|.|||+++..++--.- .+| +.| .+|-
T Consensus 20 ~~aL~~vsl~I~~Ge~~aiiG~nGsGKSTLl~~l~GLl~p~~G~I~~~g~~i~~~~~~~~~~~~r~~ig~VfQ~P~~ql~ 99 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred CCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHHHCEEEEEECCHHHHH
T ss_conf 50662417798699899999999981999999997078888875999989875557467899987408999988402220
Q ss_pred --------------CCCCHHHHHHHHHHHHHCCCCCCCCHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH
Q ss_conf --------------675348999999996302232347855501--7889989999999999999729954747998898
Q gi|254781149|r 178 --------------LEMDREKLGARALSNLLYPSSSRIPYLNLI--RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI 241 (266)
Q Consensus 178 --------------lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~--~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti 241 (266)
+-++.+++..|....+-.+ +++...+. -..|+-.+.+++.-|..-..+-.+.|-|.|.-.+
T Consensus 100 ~~tV~~~i~fg~~~~g~~~~e~~~r~~~~l~~~---gl~~~~~~~~p~~LSGGqkqRVaiA~aLa~~P~iLilDEPTagL 176 (286)
T PRK13646 100 EDTVEREMIFGPKNFKMNLDEAKNYAHRLLMDL---GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVVDEPTAGL 176 (286)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 778999998679777999999999999999984---99475775694329999999999999985198999983874438
Q ss_pred H-----HHHHHHHHHHHH
Q ss_conf 9-----999999999999
Q gi|254781149|r 242 M-----EFVHVANGLRNK 254 (266)
Q Consensus 242 ~-----~ira~aR~~k~k 254 (266)
+ +|....++++++
T Consensus 177 Dp~~~~~i~~ll~~l~~~ 194 (286)
T PRK13646 177 DPQSKRQVMRLLKSLQTD 194 (286)
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 989999999999999995
No 281
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.59 E-value=0.68 Score=26.44 Aligned_cols=123 Identities=17% Similarity=0.087 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEC----------------------------CCC
Q ss_conf 3777776553016836887068741488999999999630223236411----------------------------675
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFS----------------------------LEM 180 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fS----------------------------lEM 180 (266)
...|+++.--+.+|+++.|-|.-|.|||++.--++--..-..-.|.|.- -.|
T Consensus 21 ~~vL~~is~~i~~Gei~~iiGpnGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~l~~~l 100 (269)
T PRK11831 21 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 100 (269)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHHCEEEECCCCCCCCCC
T ss_conf 89994716688799899999399975999999996798889866999998887658878998761468985376326788
Q ss_pred CHHHHH----------------HHHHHHHHCCCCCCCC-HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-
Q ss_conf 348999----------------9999963022323478-5550178899899999999999997299547479988989-
Q gi|254781149|r 181 DREKLG----------------ARALSNLLYPSSSRIP-YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM- 242 (266)
Q Consensus 181 s~~ql~----------------~R~ls~~t~~~~s~I~-~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~- 242 (266)
+..+-. .+....+..+ ++. ..+.+-.+|+-.+.+++.-|..-+.+-.+.|-|.|.-.++
T Consensus 101 tv~eni~~~l~~~~~~~~~~~~~~v~~~Le~~---gL~~~~~~~~~~LSGGq~QRv~iAraL~~~P~iLlLDEPtsgLD~ 177 (269)
T PRK11831 101 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAV---GLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDP 177 (269)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 59999989999955899999999999999861---765456388231899999999999999759999998287567999
Q ss_pred ----HHHHHHHHHHHH
Q ss_conf ----999999999999
Q gi|254781149|r 243 ----EFVHVANGLRNK 254 (266)
Q Consensus 243 ----~ira~aR~~k~k 254 (266)
+|....++++++
T Consensus 178 ~~~~~i~~li~~l~~~ 193 (269)
T PRK11831 178 ITMGVLVKLISELNSA 193 (269)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999985
No 282
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=93.59 E-value=0.68 Score=26.43 Aligned_cols=34 Identities=9% Similarity=0.063 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 8899899999999999997299547479988989
Q gi|254781149|r 209 GEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 209 g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
.+|+-.+..++.-|..-..+-.+.|-|.|.-.++
T Consensus 167 ~~LSgGqkQrv~IA~aL~~~P~lLilDEPTa~LD 200 (520)
T TIGR03269 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLD 200 (520)
T ss_pred HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 5599999788999999845998999707633579
No 283
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.58 E-value=0.48 Score=27.50 Aligned_cols=122 Identities=17% Similarity=0.105 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEC---CCCCHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 3777776553016836887068741488999999999630223236411---6753489999999963022323478555
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFS---LEMDREKLGARALSNLLYPSSSRIPYLN 205 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fS---lEMs~~ql~~R~ls~~t~~~~s~I~~~~ 205 (266)
...+|++---+.+|+..-+.|-.|.|||+++--++.=.--..-.|.|-- ..|+.++...|+.-.+..+. .+...
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vg---l~~~~ 102 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVG---LPEEF 102 (268)
T ss_pred EEEECCEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHHHHHHHHHC---CCHHH
T ss_conf 487511568975898789993688877879999972838887269986853111366679999999999809---88778
Q ss_pred CCC--CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH-HHHHHHHHHH
Q ss_conf 017--88998999999999999972995474799889899-9999999999
Q gi|254781149|r 206 LIR--GEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME-FVHVANGLRN 253 (266)
Q Consensus 206 l~~--g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~-ira~aR~~k~ 253 (266)
+.+ ++++..+.+++.-|-.-.-+-.+.|.|.|--.+.- ++++...+=.
T Consensus 103 ~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~ 153 (268)
T COG4608 103 LYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLK 153 (268)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCHHHCCHHHHHHHHHHHH
T ss_conf 633883037313356999999850986797437211012467999999999
No 284
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.56 E-value=0.3 Score=28.88 Aligned_cols=113 Identities=15% Similarity=0.175 Sum_probs=68.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-------HCCCCEEEEC-----------------CCCCHHHH
Q ss_conf 77777655301683688706874148899999999963-------0223236411-----------------67534899
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-------MSGHGVAFFS-----------------LEMDREKL 185 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-------~~g~~Vl~fS-----------------lEMs~~ql 185 (266)
+.|+++.--+.||+.+.|-|+.|.|||++.--++-..- ..| .+.|.+ .+++.+.
T Consensus 19 ~vL~~isl~i~~Ge~~~IvG~sGsGKSTLl~~i~G~~~~~~G~I~~~g-~i~~v~Q~~~l~~~Tv~eNi~~~~~~~~~~- 96 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-SIAYVSQEPWIQNGTIRENILFGKPFDEER- 96 (204)
T ss_pred CEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCC-CEEEEECCCCCCCCCHHHHHHCCCCCCHHH-
T ss_conf 625214899769989999999998589999998189525689522589-889995877567750999974468668899-
Q ss_pred HHHHHHHHHCC-CCCCCCHH---HC-CCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf 99999963022-32347855---50-178-89989999999999999729954747998898999
Q gi|254781149|r 186 GARALSNLLYP-SSSRIPYL---NL-IRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 186 ~~R~ls~~t~~-~~s~I~~~---~l-~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
..+.+-...-. .....+.. .+ .+| .|+..++.++.=|-.-+.+.+++|-|.|.-.++.-
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~LSgGQkQRvalARal~~~~~illlDEPts~LD~~ 161 (204)
T cd03250 97 YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH 161 (204)
T ss_pred HHHHHHHHCCHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 99999997619889851353524523788757999999999999995399999996987666999
No 285
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.55 E-value=0.066 Score=33.49 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 851113777776553016836887068741488999999999630
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM 168 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~ 168 (266)
-+.||++.+|-++- +.+|+=+-|=|-+|+|||+++..++.|+..
T Consensus 52 ~l~TGIkaID~l~p-ig~GQR~gIfgg~GvGKs~L~~~i~~~~~~ 95 (276)
T cd01135 52 MIQTGISAIDGMNT-LVRGQKIPIFSGSGLPHNELAAQIARQAGV 95 (276)
T ss_pred CCCCCCEEEECCCC-CCCCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 32258535405467-236766332057886367899999998775
No 286
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.54 E-value=0.55 Score=27.11 Aligned_cols=112 Identities=10% Similarity=-0.045 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCCC-------CEEEE----CCCCCHHH-----------
Q ss_conf 1377777655301683688706874148899999999963-0223-------23641----16753489-----------
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSGH-------GVAFF----SLEMDREK----------- 184 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g~-------~Vl~f----SlEMs~~q----------- 184 (266)
-|.+||++.--+.+|+.+-|-|+.|.|||++.--++--.- .+|. +++.. .-.|+..+
T Consensus 36 ~f~AL~dVsf~i~~GEivgllG~NGaGKSTLlk~I~Gl~~P~~G~I~~~G~i~~~~~~~~l~~~lt~~eni~~~~~~~g~ 115 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGF 115 (264)
T ss_pred EEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEEECCCCCCCCEEEHHHHHHHHHCCC
T ss_conf 89995270788859989999989986199999999679888874799998874885035657443000158889987242
Q ss_pred ----HHHHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf ----9999999630223234785-550178899899999999999997299547479988989
Q gi|254781149|r 185 ----LGARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 185 ----l~~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
+-.++-..+ ....+.. .+-.-++++..+..++.-|..-+.+-++.|-|.|.-.++
T Consensus 116 ~~~~~~~~~~~~l---e~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~P~iLiLDEPts~LD 175 (264)
T PRK13546 116 KRKEIKAMTPKII---EFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD 175 (264)
T ss_pred CHHHHHHHHHHHH---HHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 4999999999999---85120556517553479999999999999956999999959875489
No 287
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=93.54 E-value=0.7 Score=26.37 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=30.9
Q ss_pred CEEEEE-CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 368870-68741488999999999630223236411675
Q gi|254781149|r 143 ELILIG-ARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180 (266)
Q Consensus 143 ~Livia-aRP~mGKTa~alnia~~~a~~g~~Vl~fSlEM 180 (266)
..|.|+ =.-|+|||+.+.|+|...|.+|+.|++.-|.-
T Consensus 105 ~VIav~N~KGGVGKTTtav~LA~~LA~~G~RVLvIDLDP 143 (387)
T TIGR03453 105 QVIAVTNFKGGSGKTTTSAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 089997888765699999999999997799889995370
No 288
>PRK13768 GTPase; Provisional
Probab=93.53 E-value=0.11 Score=31.93 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 11137777765530168368870687414889999999996
Q gi|254781149|r 126 KWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM 166 (266)
Q Consensus 126 ~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~ 166 (266)
++|-.=++.+..+++.--++++=+.-..--+.|..++....
T Consensus 115 ~~~~~i~~~L~~~~~~~~v~l~D~~~~~~~~~fiS~~L~a~ 155 (253)
T PRK13768 115 ESGRYLVEKLSSGSKSLSVYLIDAVLAKDPSDFVSLLLLAL 155 (253)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECHHHHCCHHHHHHHHHHHH
T ss_conf 07999999986368628999845056378879999999999
No 289
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.50 E-value=0.71 Score=26.33 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-------HCCCCE--------------------------EE
Q ss_conf 377777655301683688706874148899999999963-------022323--------------------------64
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-------MSGHGV--------------------------AF 175 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-------~~g~~V--------------------------l~ 175 (266)
...||.+.--+.+|+.+-|.|..|.|||++.-.++.-.. ..|.++ .+
T Consensus 18 ~~vl~~isl~i~~Gei~~iiG~sGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~r~~i~~v 97 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV 97 (257)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCCCCCCCHHHHHHHHCCEEEE
T ss_conf 88873606688799799999899981999999996599999818999999943445654201226788999975776899
Q ss_pred EC-----CCCC----------------HHHHHHHHHHHHHCCCCCCCCHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCE
Q ss_conf 11-----6753----------------48999999996302232347855501--7889989999999999999729954
Q gi|254781149|r 176 FS-----LEMD----------------REKLGARALSNLLYPSSSRIPYLNLI--RGEINQEQYRISQGICEKLQDFPLI 232 (266)
Q Consensus 176 fS-----lEMs----------------~~ql~~R~ls~~t~~~~s~I~~~~l~--~g~l~~~e~~~i~~a~~~l~~~pl~ 232 (266)
|. ..|+ ..+...|....+.. -++...... -.+|+-.+.+++.-|..-+.+-.+.
T Consensus 98 ~Q~~~l~~~~tv~~nv~~~~~~~~~~~~~~~~~~~~~~l~~---~gl~~~~~~~~p~~LSGGq~QRv~IAraL~~~P~lL 174 (257)
T PRK10619 98 FQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAK---VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVL 174 (257)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 34774478863999999999998399878899999999998---499478862587558999999999999986399899
Q ss_pred EECCCCCCHH-----HHHHHHHHHHHH
Q ss_conf 7479988989-----999999999999
Q gi|254781149|r 233 IDDRPSPGIM-----EFVHVANGLRNK 254 (266)
Q Consensus 233 IdD~~~~ti~-----~ira~aR~~k~k 254 (266)
|-|.|.-.++ +|....++++++
T Consensus 175 llDEPts~LD~~~~~~i~~ll~~l~~~ 201 (257)
T PRK10619 175 LFDEPTSALDPELVGEVLRIMQQLAEE 201 (257)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 976886658989999999999999975
No 290
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=93.50 E-value=0.063 Score=33.66 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 85111377777655301683688706874148899999999963022
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSG 170 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g 170 (266)
-+.||++.+|-++- +.+|+=+.|=|-+|.|||+++++...|...++
T Consensus 145 pL~TGIkaID~l~p-igrGQR~gIfg~~GvGKT~L~~~~I~nq~~~~ 190 (502)
T PRK13343 145 PLQTGLKVIDALIP-IGRGQRELIIGDRQTGKTAIAIDAIINQKDKD 190 (502)
T ss_pred CCCCCEEEEECCCC-CCCCCEEECCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 43126067405566-46785775136788880489999999725788
No 291
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=93.48 E-value=0.63 Score=26.68 Aligned_cols=124 Identities=17% Similarity=0.189 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH----C----------------------CCCEE-EEC----
Q ss_conf 3777776553016836887068741488999999999630----2----------------------23236-411----
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM----S----------------------GHGVA-FFS---- 177 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~----~----------------------g~~Vl-~fS---- 177 (266)
...+|++---+++|+.+-|.|..|.|||+++..+.--... + ++.+. +|-
T Consensus 29 v~av~~Vsf~i~~GEilgivGeSGsGKSTl~~~i~gll~~~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~I~~vfQdp~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCHHHHHHHHCCCEEEEEECCCH
T ss_conf 89866747688899899998689877999999997688888833589999999866589999998630667999607501
Q ss_pred -C------------------CCCHHHHHHHHHHHHHCCCCCCCCH--HHCC--CCCCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf -6------------------7534899999999630223234785--5501--788998999999999999972995474
Q gi|254781149|r 178 -L------------------EMDREKLGARALSNLLYPSSSRIPY--LNLI--RGEINQEQYRISQGICEKLQDFPLIID 234 (266)
Q Consensus 178 -l------------------EMs~~ql~~R~ls~~t~~~~s~I~~--~~l~--~g~l~~~e~~~i~~a~~~l~~~pl~Id 234 (266)
| -++..+...+.+..+.. -+++. ..+. -++|+..+.+|+.-|..-+.+-.+-|-
T Consensus 109 sLnP~~~i~~~l~e~l~~~~~~~~~~~~~~~~~lL~~---v~l~~~~~~l~~yP~eLSGGq~QRV~IArAL~~~P~lLI~ 185 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDA---VKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 185 (330)
T ss_pred HCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---HHCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 1384104566555789885389989999999988887---6072178887348153398899999999999709999997
Q ss_pred CCCCCCHH-----HHHHHHHHHHHHH
Q ss_conf 79988989-----9999999999994
Q gi|254781149|r 235 DRPSPGIM-----EFVHVANGLRNKH 255 (266)
Q Consensus 235 D~~~~ti~-----~ira~aR~~k~k~ 255 (266)
|.|.-.++ +|-.-.+.+++++
T Consensus 186 DEPTsaLDv~~q~~Il~ll~~l~~e~ 211 (330)
T PRK09473 186 DEPTTALDVTVQAQIMTLLNELKREF 211 (330)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 38755479999999999999999974
No 292
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.44 E-value=0.51 Score=27.33 Aligned_cols=113 Identities=18% Similarity=0.148 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CCC--------------EE-EEC--------
Q ss_conf 1377777655301683688706874148899999999963-02------232--------------36-411--------
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GHG--------------VA-FFS-------- 177 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~~--------------Vl-~fS-------- 177 (266)
|...||++---+++|+.+.|.|.-|.|||+++..++--.- .+ |++ |. +|.
T Consensus 14 ~~~al~~vsl~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~P~~G~I~v~G~~i~~~~~~~~~~r~~vg~vfQ~p~~ql~~ 93 (275)
T PRK13639 14 GTVALKGINFKAEEGEMIAILGPNGAGKSTLFLHFNGILKPSSGSVLIKGEPIKYDKKSLLNVRKTVGIVFQNPDDQLFA 93 (275)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCEEEECCCHHHHCC
T ss_conf 98999864889989989999999996499999999739899963999999999888065999987415993383576562
Q ss_pred -------------CCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf -------------67534899999999630223234785550178899899999999999997299547479988989
Q gi|254781149|r 178 -------------LEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 178 -------------lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
+-++.+++..|.-..+-.+..... .+-.-..|+-.+.+++.-|..-+.+-++.|-|.|.-.++
T Consensus 94 ~tV~e~i~fg~~~~g~~~~e~~~rv~~~l~~~gL~~~--~~~~p~~LSGGqkqRVaiA~aLa~~P~iliLDEPTagLD 169 (275)
T PRK13639 94 PTVEEDVAFGPMNLGLSKEEVEKRVKDALKAVGMEGF--ERKPPHHLSGGQKKRVAIAGILAMNPEIMVLDEPTSGLD 169 (275)
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH--HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 7199999999998599999999999999987799456--657944499999999999888736998999779755489
No 293
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.44 E-value=0.72 Score=26.27 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC-------------CCEEEEC--------CCCCHHHHH
Q ss_conf 377777655301683688706874148899999999963-022-------------3236411--------675348999
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG-------------HGVAFFS--------LEMDREKLG 186 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g-------------~~Vl~fS--------lEMs~~ql~ 186 (266)
...|+++.--+.+|+++.|-|+-|.|||++.--++--.- .+| +.+.|.+ +.++..+..
T Consensus 12 ~~~L~~is~~i~~Ge~~~liGpNGaGKSTllk~i~Gl~~p~~G~i~i~g~~~~~~~~~igyv~Q~~~~~~~~~ltv~e~v 91 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVV 91 (213)
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 99885027898599899999999986999999997687889758999999850421828997356333555897399999
Q ss_pred H-------------------HHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH---
Q ss_conf 9-------------------99996302232347855501---7889989999999999999729954747998898---
Q gi|254781149|r 187 A-------------------RALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI--- 241 (266)
Q Consensus 187 ~-------------------R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti--- 241 (266)
. |+-..+ ..+....+. -+.|+..+.+++.=|..-+.+-++.|-|.|.-.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~~~l-----~~~~l~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPtsgLD~~ 166 (213)
T cd03235 92 LMGLYGHKGLFRRLSKADKAKVDEAL-----ERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166 (213)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHH-----HHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 85776543222688299999999999-----9879999981984657989999999999996699999981886678999
Q ss_pred --HHHHHHHHHHHH
Q ss_conf --999999999999
Q gi|254781149|r 242 --MEFVHVANGLRN 253 (266)
Q Consensus 242 --~~ira~aR~~k~ 253 (266)
.++....+++++
T Consensus 167 ~~~~~~~~i~~l~~ 180 (213)
T cd03235 167 TQEDIYELLRELRR 180 (213)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999996
No 294
>PRK11670 putative ATPase; Provisional
Probab=93.42 E-value=0.12 Score=31.63 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=33.4
Q ss_pred CEE-EEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 368-870687414889999999996302232364116753
Q gi|254781149|r 143 ELI-LIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMD 181 (266)
Q Consensus 143 ~Li-viaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs 181 (266)
+.| |-.|.-|+|||+.+.|+|...|..|+.|+++.....
T Consensus 108 ~vIAVaSGKGGVGKSTvavNLA~ALA~~G~kVgllDADi~ 147 (369)
T PRK11670 108 NIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIY 147 (369)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 8999985899888999999999999966993789824788
No 295
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.42 E-value=0.12 Score=31.76 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=29.9
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 301683688706874148899999999963022323641167
Q gi|254781149|r 138 GVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179 (266)
Q Consensus 138 G~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlE 179 (266)
+=.+|-.+.+.|.||+|||+++-.||... |.+..-+||=
T Consensus 345 ~~~kg~IlclvGpPGvGKTSl~~sIA~al---~r~f~rislG 383 (784)
T PRK10787 345 NKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYVRMALG 383 (784)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECC
T ss_conf 46778779964699877246999999985---8986998068
No 296
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=93.41 E-value=0.7 Score=26.35 Aligned_cols=125 Identities=14% Similarity=0.048 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CCC-------------EEEECC---------C
Q ss_conf 377777655301683688706874148899999999963-02------232-------------364116---------7
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GHG-------------VAFFSL---------E 179 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~~-------------Vl~fSl---------E 179 (266)
+..+|++---+++|+.+-|.|..|.|||+|+--++--.. .+ |++ +.|.+- .
T Consensus 276 ~~~l~~vsf~v~~GEi~gl~G~nGsGKsTL~~~l~Gl~~~~~G~I~~~G~~i~~~~~~~~~~~gi~~v~~~r~~~~l~~~ 355 (510)
T PRK09700 276 RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred CCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCCEEEEEEHHHCCCCCC
T ss_conf 88654335787488189997688862889999981988888618999999999899899997086775310332474889
Q ss_pred CCHH-HHH-HHHHHHH-----HC--------------CCCCCCCHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf 5348-999-9999963-----02--------------232347855501--78899899999999999997299547479
Q gi|254781149|r 180 MDRE-KLG-ARALSNL-----LY--------------PSSSRIPYLNLI--RGEINQEQYRISQGICEKLQDFPLIIDDR 236 (266)
Q Consensus 180 Ms~~-ql~-~R~ls~~-----t~--------------~~~s~I~~~~l~--~g~l~~~e~~~i~~a~~~l~~~pl~IdD~ 236 (266)
++-. .+. .+-+... .+ ...-.+....+. -+.|+..+.+++.-|..-+.+.++.|-|.
T Consensus 356 ~sv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~LSGGq~Qrv~iAraL~~~p~lLilDE 435 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435 (510)
T ss_pred CCHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 96899998998764210000101367789999999999871886554228814599999999999999985998899979
Q ss_pred CCC-----CHHHHHHHHHHHHH
Q ss_conf 988-----98999999999999
Q gi|254781149|r 237 PSP-----GIMEFVHVANGLRN 253 (266)
Q Consensus 237 ~~~-----ti~~ira~aR~~k~ 253 (266)
|.- +..+|....|.+++
T Consensus 436 PT~GlD~~~~~~i~~li~~l~~ 457 (510)
T PRK09700 436 PTRGIDVGAKAEIYKVMRQLAD 457 (510)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7558999999999999999996
No 297
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=93.40 E-value=0.076 Score=33.07 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=30.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEE--CCCCCHHHHH
Q ss_conf 688706874148899999999963022323641--1675348999
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFF--SLEMDREKLG 186 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~f--SlEMs~~ql~ 186 (266)
=+=+-|..|.|||++|+++|.. .+.||++. .=|....+|.
T Consensus 23 PvHl~GPaG~GKT~LA~hvA~~---r~RPV~l~~Gd~eL~~~DLv 64 (265)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK---RDRPVVLINGDAELTTSDLV 64 (265)
T ss_pred CEEEECCCCCCHHHHHHHHHHH---CCCCEEEEECCCCCCCCCCC
T ss_conf 6674478885568999999973---68968998658232654423
No 298
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.39 E-value=0.27 Score=29.22 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-------CC-------------CEEEEC------CCCCH
Q ss_conf 37777765530168368870687414889999999996302-------23-------------236411------67534
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMS-------GH-------------GVAFFS------LEMDR 182 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~-------g~-------------~Vl~fS------lEMs~ 182 (266)
.+.||++.--+++|+.+.|.|.-|.|||++.-.++--.-.. |+ .+.|.. -.|+.
T Consensus 13 ~~~L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~gi~~v~Q~~~l~~~ltv 92 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV 92 (222)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCEEEECCCCCCCCCCCH
T ss_conf 99981408998899899999999985999999997798899609999999999999999997593896356656889909
Q ss_pred HHHHH----------------HHHHHHHCCCCCCCC-HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH----
Q ss_conf 89999----------------999963022323478-555017889989999999999999729954747998898----
Q gi|254781149|r 183 EKLGA----------------RALSNLLYPSSSRIP-YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI---- 241 (266)
Q Consensus 183 ~ql~~----------------R~ls~~t~~~~s~I~-~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti---- 241 (266)
.|... +++.... .+. ..+-+-+.|+-.+.+++.-|..-+.+-++.|-|.|.-.+
T Consensus 93 ~enl~~~~~~~~~~~~~~~~~~~l~~~~-----~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~lllLDEPt~gLD~~~ 167 (222)
T cd03224 93 EENLLLGAYARRRAKRKARLERVYELFP-----RLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI 167 (222)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-----HHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 9999998763581359999999998866-----37998748454489999999999999964999999938654799999
Q ss_pred -HHHHHHHHHHH
Q ss_conf -99999999999
Q gi|254781149|r 242 -MEFVHVANGLR 252 (266)
Q Consensus 242 -~~ira~aR~~k 252 (266)
.+|....|+++
T Consensus 168 ~~~i~~~l~~l~ 179 (222)
T cd03224 168 VEEIFEAIRELR 179 (222)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 299
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.38 E-value=0.74 Score=26.20 Aligned_cols=110 Identities=18% Similarity=0.151 Sum_probs=64.1
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCCCCEEEECCC---C---------------------C-HHH
Q ss_conf 7777655301683688706874148899999999963-022323641167---5---------------------3-489
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSGHGVAFFSLE---M---------------------D-REK 184 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g~~Vl~fSlE---M---------------------s-~~q 184 (266)
-|+++---+++|+++.|-|..|.|||++.--++--.. .+| .|.|-.-+ + + .+.
T Consensus 22 iL~~is~~i~~Ge~~~i~G~sGsGKSTLlk~i~gl~~p~~G-~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 100 (225)
T PRK10247 22 ILNNINFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSG-TLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDN 100 (225)
T ss_pred EEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHHCCEEECCCCCCHHHHHHH
T ss_conf 99451799859969999999999999999999646688876-59999999774999999852745704554341539999
Q ss_pred HH------------HHHHHHHHCCCCCCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf 99------------9999963022323478555017--889989999999999999729954747998898999
Q gi|254781149|r 185 LG------------ARALSNLLYPSSSRIPYLNLIR--GEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 185 l~------------~R~ls~~t~~~~s~I~~~~l~~--g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
+. .++...+ ..-.++..-+.+ +.|+..|..++.=|-.-+.+.++.|-|.|.-.++.-
T Consensus 101 i~~~~~~~~~~~~~~~~~~~l---~~~~l~~~~~~~~~~~LSGGqkQRv~iARaL~~~p~iLllDEPts~LD~~ 171 (225)
T PRK10247 101 LIFPWQIRNQQPDPAIFLDDL---ERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES 171 (225)
T ss_pred HHHHHHHCCCCHHHHHHHHHH---HHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 985787667667899999999---87599566761881118999999999999986099999995976668999
No 300
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.31 E-value=0.14 Score=31.29 Aligned_cols=124 Identities=13% Similarity=0.139 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEECCCCCHHH--H--HHHHHHHHHCCCCCCCCH
Q ss_conf 3777776553016836887068741488999999999630-2232364116753489--9--999999630223234785
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGHGVAFFSLEMDREK--L--GARALSNLLYPSSSRIPY 203 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~~Vl~fSlEMs~~q--l--~~R~ls~~t~~~~s~I~~ 203 (266)
...||++---+.+|+.+.|-|..|.|||++.--++ ..-. ..-.|.|..-+.+... + ..|-++..-. +.+-+|.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~ivGpSG~GKSTllr~i~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~rr~ig~vFQ-~~~L~p~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA-GLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQ-DFALFPH 90 (178)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCCHHHHHCCCEEEEEC-CCCCCCC
T ss_conf 99983707698899899999999983999999998-599999639999999998886102454177599926-9988998
Q ss_pred ----HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHHHHHH
Q ss_conf ----550178899899999999999997299547479988989-----9999999999994
Q gi|254781149|r 204 ----LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGLRNKH 255 (266)
Q Consensus 204 ----~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~k~k~ 255 (266)
.++..+ |+-.+.+|+.-|-.-+.+-++.+.|.|.-.++ +|+...+++.+++
T Consensus 91 ~tv~eNv~~~-LSGGq~QRvaIARAL~~~P~ill~DEPts~LD~~~~~~i~~~l~~l~~~~ 150 (178)
T cd03229 91 LTVLENIALG-LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQL 150 (178)
T ss_pred CCHHHHHCEE-CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9289960081-77268899999999852999999708976479999999999999999964
No 301
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.23 E-value=0.26 Score=29.36 Aligned_cols=114 Identities=16% Similarity=0.102 Sum_probs=64.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECC---CCCHHHHHHHHHHHHHCC----------
Q ss_conf 7777765530168368870687414889999999996302232364116---753489999999963022----------
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSL---EMDREKLGARALSNLLYP---------- 196 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSl---EMs~~ql~~R~ls~~t~~---------- 196 (266)
+.|+++.--+.||+.+.|-|+.|.|||+++--++.-.--..-.|.+-.. +++.+++..+ ++....-
T Consensus 22 ~iL~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p~~G~I~idg~di~~~~~~~~r~~-i~~v~Q~~~lf~~ti~~ 100 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS-LTIIPQDPTLFSGTIRS 100 (207)
T ss_pred CCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEECCCCCHHHHHHH-CEEEECCCEECCCCHHH
T ss_conf 72402588986999999999999879999999998728888789999999540799999951-53770356332754998
Q ss_pred --C-CCCCCHH------HCC-CC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf --3-2347855------501-78-89989999999999999729954747998898999
Q gi|254781149|r 197 --S-SSRIPYL------NLI-RG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 197 --~-~s~I~~~------~l~-~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
. ....... ++. .| .|+..++.++.-|-.-+.+.+++|-|.|.-.++.-
T Consensus 101 Nl~~~~~~~~~~i~~~l~~~~~g~~LSgGqkQrl~iARal~~~p~ililDEpts~LD~~ 159 (207)
T cd03369 101 NLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159 (207)
T ss_pred HCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 73803335899999998604788886989999999999997089999981634448989
No 302
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.23 E-value=0.28 Score=29.08 Aligned_cols=119 Identities=18% Similarity=0.155 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C------CC-------------CEEEEC------CCCCH
Q ss_conf 3777776553016836887068741488999999999630-2------23-------------236411------67534
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-S------GH-------------GVAFFS------LEMDR 182 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~------g~-------------~Vl~fS------lEMs~ 182 (266)
...|+++.--+++|+.+.|.|.-|.|||++.-.++-...- + |+ .+.|+. -+|+.
T Consensus 18 ~~~L~~isl~i~~Gei~~liG~NGaGKSTLl~~i~G~~~~~~G~I~~~G~~i~~~~~~~~~r~~i~~vpq~~~~~~~ltv 97 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTV 97 (237)
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCCH
T ss_conf 88881127898699799998799975999999996799889628999999888799899987064783556645777889
Q ss_pred HHHH----------------HHHHHHHHCCCCCCCCHH-HCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH----
Q ss_conf 8999----------------999996302232347855-5017889989999999999999729954747998898----
Q gi|254781149|r 183 EKLG----------------ARALSNLLYPSSSRIPYL-NLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI---- 241 (266)
Q Consensus 183 ~ql~----------------~R~ls~~t~~~~s~I~~~-~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti---- 241 (266)
.+-. .|+.... .++... .-+-+.|+-.+.+++.=|..-+.+-++.|-|.|.-.+
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~lLlLDEPt~gLD~~~ 172 (237)
T PRK11614 98 EENLAMGGFFAERDQFQERIKWVYELF-----PRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172 (237)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHH-----HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 999875101378678999999999865-----555676544223489988599999999856999999959755799999
Q ss_pred -HHHHHHHHHHH
Q ss_conf -99999999999
Q gi|254781149|r 242 -MEFVHVANGLR 252 (266)
Q Consensus 242 -~~ira~aR~~k 252 (266)
.+|....++++
T Consensus 173 ~~~i~~~l~~l~ 184 (237)
T PRK11614 173 IQQIFDTIEQLR 184 (237)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 303
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.16 E-value=0.79 Score=25.98 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=55.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-HHCC------C----------------CEE-EEC--------
Q ss_conf 7777765530168368870687414889999999996-3022------3----------------236-411--------
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM-AMSG------H----------------GVA-FFS-------- 177 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~-a~~g------~----------------~Vl-~fS-------- 177 (266)
+.|+++---+.+|+++.|-|+-|.|||+++.-++--. ..+| . .+. +|.
T Consensus 21 ~aL~~Vsl~i~~Ge~~aiiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~iG~vfQ~p~~ql~~ 100 (280)
T PRK13649 21 RALFDVNLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDDTDITSHSKNKEIKSIRKKVGLVFQFPESQLFE 100 (280)
T ss_pred CEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCHHHHHHHHHHEEEEEECCCCCCCC
T ss_conf 75410268987998999995999869999999966999886089999999877782013999987646997465212360
Q ss_pred -------------CCCCHHHHHHHHHHHHHCCCCCCCCHH--HCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf -------------675348999999996302232347855--50178899899999999999997299547479988989
Q gi|254781149|r 178 -------------LEMDREKLGARALSNLLYPSSSRIPYL--NLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 178 -------------lEMs~~ql~~R~ls~~t~~~~s~I~~~--~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
+-|+.++.-.|....+.. -+++.. +-.-..|+-.+.+++.-|..-+.+-.+.|-|.|...++
T Consensus 101 ~tV~eev~fg~~~~g~~~~e~~~~v~~~l~~---~gL~e~~~~r~p~~LSGGqkqRvaiA~aL~~~P~iLllDEPTsgLD 177 (280)
T PRK13649 101 ETVLKDVAFGPQNFGVSPEEAEALAREKLAL---VGISENLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177 (280)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 3099999868988699999999999999987---6997466542900099999999999999974999999848755489
No 304
>PRK13542 consensus
Probab=93.15 E-value=0.78 Score=26.01 Aligned_cols=113 Identities=14% Similarity=0.067 Sum_probs=71.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCCC-----------EEEE------CCCCCHHHH
Q ss_conf 777776553016836887068741488999999999630-------2232-----------3641------167534899
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGHG-----------VAFF------SLEMDREKL 185 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~~-----------Vl~f------SlEMs~~ql 185 (266)
+-|+.+--.+.||+.+.|-|.-|.|||++.-.++--..- .|++ +.|+ ..+|+..+-
T Consensus 32 ~il~~isl~i~~Gei~~liGpNGaGKTTLlk~l~Gll~p~~G~I~~~G~~i~~~~~~~~~~~~~v~~~~~l~~~ltv~en 111 (224)
T PRK13542 32 AVFRGIDISLAPGDLLQVMGPNGSGKTSLLRVLSGLMPPAEGDLYWRGRAVRAGDPDYLQQLAYVGHANGIDPDLSAFEN 111 (224)
T ss_pred EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHEEEECCCCCCCCCCCHHHH
T ss_conf 98846167875997999999999999999999957978885289999999987998888444786663335878729999
Q ss_pred HHHHHHHHHCCC-----------CCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 999999630223-----------234785-5501788998999999999999972995474799889899
Q gi|254781149|r 186 GARALSNLLYPS-----------SSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 186 ~~R~ls~~t~~~-----------~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
. ++.+...+.. .-++.. .+.+-+.|+..+.+|+.=|.--+.+.+++|-|.|.-.++.
T Consensus 112 l-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~illLDEPtagLD~ 180 (224)
T PRK13542 112 L-RFAARLAGQQATADAVHHALARFGLDRVMHAPARTLSQGQRRRVALARLALTPRALWLLDEPLTSLDD 180 (224)
T ss_pred H-HHHHHHCCCCCHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 9-99998738874699999999984990254688124999999999999998079988997385354899
No 305
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.12 E-value=0.8 Score=25.94 Aligned_cols=126 Identities=10% Similarity=0.122 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC-----------------CEEE--------
Q ss_conf 13777776553016836887068741488999999999630-------223-----------------2364--------
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH-----------------GVAF-------- 175 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~-----------------~Vl~-------- 175 (266)
.+..||++.--+.+|+.+-|-|..|.|||+++-.+..-..- .|+ ...|
T Consensus 17 ~v~AL~~Vsl~I~~Gei~giIG~SGaGKSTLlr~i~gL~~ptsG~I~~~G~dl~~l~~~~l~~~Rr~Ig~ifQ~~~l~~~ 96 (343)
T PRK11153 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSESELTKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred EEEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCEEEEECCCCCCCC
T ss_conf 89999661889989989999999998699999999659999963999999999879988999986386999506633788
Q ss_pred --------EC---CCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH---
Q ss_conf --------11---6753489999999963022323478555017889989999999999999729954747998898---
Q gi|254781149|r 176 --------FS---LEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI--- 241 (266)
Q Consensus 176 --------fS---lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti--- 241 (266)
|. ..+++.++-.|....+..+..+.. .+-.-.+|+..+..|+.-|..-+.+-.+.|.|.|.-.+
T Consensus 97 ~tV~env~~~l~~~~~~k~~~~~rv~elL~~vgL~~~--~~~~p~~LSGGqkQRV~IArALa~~P~iLl~DEPTsaLDp~ 174 (343)
T PRK11153 97 RTVFGNVALPLELDNTPKDEIKRRVTELLDLVGLGDK--HDSYPANLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174 (343)
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH--HCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 7289999999997699999999999999987799447--61975118999999999999986699999992887658999
Q ss_pred --HHHHHHHHHHHHHH
Q ss_conf --99999999999994
Q gi|254781149|r 242 --MEFVHVANGLRNKH 255 (266)
Q Consensus 242 --~~ira~aR~~k~k~ 255 (266)
.+|..-.+++.+++
T Consensus 175 t~~~Il~lL~~l~~e~ 190 (343)
T PRK11153 175 TTRSILELLKDINRRL 190 (343)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999961
No 306
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.12 E-value=0.16 Score=30.89 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=11.8
Q ss_pred CCCEEEEECCCCHHHHHH
Q ss_conf 683688706874148899
Q gi|254781149|r 141 LRELILIGARPSMGKTTF 158 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~ 158 (266)
.=|+++|=..|+.|.-+.
T Consensus 119 ~yD~iiID~pp~l~~l~~ 136 (259)
T COG1192 119 DYDYIIIDTPPSLGVLTL 136 (259)
T ss_pred CCCEEEECCCCCHHHHHH
T ss_conf 999899899986167779
No 307
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.12 E-value=0.2 Score=30.20 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCC------CEEEEC----------CCCCHHH
Q ss_conf 1377777655301683688706874148899999999963-0------223------236411----------6753489
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGH------GVAFFS----------LEMDREK 184 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~------~Vl~fS----------lEMs~~q 184 (266)
|=|-|+++.--+.||+.+.|-|+.|.|||+++.-++.-.- . .|+ ...+|+ ...+..+
T Consensus 49 ~~pVLk~Isf~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~~p~~G~I~~~g~i~~v~Q~~~lf~~TireNI~~g~~~~~~~ 128 (282)
T cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYR 128 (282)
T ss_pred CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHH
T ss_conf 89614164899849999999999998199999999578727865899999999865744226710999975168868899
Q ss_pred HHHHHHHHHHCC--CCCCCCHHH---C-CCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHH
Q ss_conf 999999963022--323478555---0-178-899899999999999997299547479988989999
Q gi|254781149|r 185 LGARALSNLLYP--SSSRIPYLN---L-IRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFV 245 (266)
Q Consensus 185 l~~R~ls~~t~~--~~s~I~~~~---l-~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ir 245 (266)
....+... ++ ...+.|... + ..| .|+..++.++.-|-.-+.+.+|+|-|.|.-.++-.-
T Consensus 129 -~~~~~~~~-~l~~~i~~lp~g~~t~vge~G~~LSGGQkQRlaiARALl~~p~IliLDEpTS~LD~~t 194 (282)
T cd03291 129 -YKSVVKAC-QLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194 (282)
T ss_pred -HHHHHHHH-CCHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf -99999985-1499998463425523003677589999999999999842899899868776689878
No 308
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.5 Score=27.38 Aligned_cols=104 Identities=18% Similarity=0.124 Sum_probs=63.9
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCCCE-----------EE------ECCCCCHHHHHHHHHHHH
Q ss_conf 3016836887068741488999999999630-------22323-----------64------116753489999999963
Q gi|254781149|r 138 GVQLRELILIGARPSMGKTTFALSTALHMAM-------SGHGV-----------AF------FSLEMDREKLGARALSNL 193 (266)
Q Consensus 138 G~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~~V-----------l~------fSlEMs~~ql~~R~ls~~ 193 (266)
-|.+|+.++|-|+-|.|||++.--+|-=+-- ++.+. .| .-.||+..|-. |+....
T Consensus 24 ~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL-~F~~~~ 102 (209)
T COG4133 24 TLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENL-HFWQRF 102 (209)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH-HHHHHH
T ss_conf 8748877999899987588999999712687777578547887320356888878860653443220298888-999997
Q ss_pred HCC-CCCC-------CC---HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 022-3234-------78---5550178899899999999999997299547479988989
Q gi|254781149|r 194 LYP-SSSR-------IP---YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 194 t~~-~~s~-------I~---~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
.+- +... +. ..++-.+.|+..+.+++.-|-=.++..||||-|.|--.|+
T Consensus 103 ~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLD 162 (209)
T COG4133 103 HGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162 (209)
T ss_pred HCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCC
T ss_conf 388752049999997386653446022236468999999999727887166448532249
No 309
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=93.06 E-value=0.15 Score=31.04 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHCCCEEECCCCCCHHHHHH
Q ss_conf 999999999972995474799889899999
Q gi|254781149|r 217 RISQGICEKLQDFPLIIDDRPSPGIMEFVH 246 (266)
Q Consensus 217 ~~i~~a~~~l~~~pl~IdD~~~~ti~~ira 246 (266)
..+.+.++++.+-+-..--+| ++-.++..
T Consensus 235 ~aY~~LA~~I~~~~~~~~P~p-l~~~el~~ 263 (273)
T PRK13232 235 KEYLTLAHNVQNNDKLVVPTP-LPMEELEA 263 (273)
T ss_pred HHHHHHHHHHHHCCCCCCCCC-CCHHHHHH
T ss_conf 999999999985899877887-99899999
No 310
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=93.00 E-value=0.84 Score=25.82 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC-------------CEEEEC------CCCC
Q ss_conf 13777776553016836887068741488999999999630-------223-------------236411------6753
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH-------------GVAFFS------LEMD 181 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~-------------~Vl~fS------lEMs 181 (266)
|.+.|+++.--+.+|+.+.|.|+-|.|||++.--++--... .|+ .+.|.. ..|+
T Consensus 15 ~~~~l~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~Gl~~~~~G~I~i~g~~i~~~~~~~~~~~~ig~v~Q~~~l~~~lt 94 (241)
T PRK10895 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLS 94 (241)
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEEECCCCCCCCCCC
T ss_conf 99999520789839979999889998699999999678888876277634523448988998577699624354577888
Q ss_pred ----------------HHHHHHHHHHHHHCCCCCCCCHHHCCC---CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf ----------------489999999963022323478555017---8899899999999999997299547479988989
Q gi|254781149|r 182 ----------------REKLGARALSNLLYPSSSRIPYLNLIR---GEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 182 ----------------~~ql~~R~ls~~t~~~~s~I~~~~l~~---g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
.++...|....+. .+....++. +.|+..+.+++.=|..-+.+-++.|-|.|.-.++
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~~~LSgG~kqrv~iAraL~~~P~illLDEPt~gLD 169 (241)
T PRK10895 95 VYDNLMAVLQIRDDLSAEQREDRANELME-----EFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169 (241)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHH-----HCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 99999999998448998999999999999-----7799146411066689888999999999966998899958754799
No 311
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.97 E-value=0.21 Score=29.97 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=65.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC--------------------------CCEEEE-----C-
Q ss_conf 7777655301683688706874148899999999963-022--------------------------323641-----1-
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG--------------------------HGVAFF-----S- 177 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g--------------------------~~Vl~f-----S- 177 (266)
.|+++---+.||+.+.|-|+.|.|||+++.-++.-.- .+| .|.+|- .
T Consensus 36 vL~~inl~I~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~idg~di~~~~~~~lr~~i~~v~Q~~~lf~~Ti~~Ni 115 (257)
T cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL 115 (257)
T ss_pred CEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEHHHCCHHHHHHHEEEEECCCCCCCCHHHHCC
T ss_conf 31053899879999999999998199999999605667888899998996879999997505799456734361355413
Q ss_pred ---CCCCHHHHHHHHHHH--HHCCC---CCCCCHHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf ---675348999999996--30223---234785550178-89989999999999999729954747998898999
Q gi|254781149|r 178 ---LEMDREKLGARALSN--LLYPS---SSRIPYLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 178 ---lEMs~~ql~~R~ls~--~t~~~---~s~I~~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
...+.+++.. .+.. +..+- ..+++..--..| .|+..|+.++.=|-.-+.+.+++|-|.|.-.++..
T Consensus 116 ~~~~~~~~~~i~~-al~~~~l~~~i~~lp~gl~t~l~~~g~~LSgGQrQri~lARAll~~~~iliLDEpts~LD~~ 190 (257)
T cd03288 116 DPECKCTDDRLWE-ALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMA 190 (257)
T ss_pred CCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 7566768999999-99996237999737589851746876836999999999999995599999995876678999
No 312
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.97 E-value=0.84 Score=25.79 Aligned_cols=108 Identities=13% Similarity=0.061 Sum_probs=66.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C------C-----------CCEEEEC------CCCCHHHH
Q ss_conf 777776553016836887068741488999999999630-2------2-----------3236411------67534899
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-S------G-----------HGVAFFS------LEMDREKL 185 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~------g-----------~~Vl~fS------lEMs~~ql 185 (266)
+-|+++.--+.+|+++.|-|.-|.|||++.--++--..- + | +.+.|+. ..|+-.+.
T Consensus 15 ~vl~~is~~i~~G~i~~l~G~NGaGKSTLlkli~Gl~~p~~G~I~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~ltv~e~ 94 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLREN 94 (200)
T ss_pred EEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEEEECCCCCCCCCCCHHHH
T ss_conf 98812278987997999988999879999999977858898569999986463447776337874443467867769999
Q ss_pred H-------------HHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 9-------------99999630223234785-5501788998999999999999972995474799889899
Q gi|254781149|r 186 G-------------ARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 186 ~-------------~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
. .+++.. . ++.. .+-+-+.|+..+.+++.=|..-+.+.+++|-|.|.-.++.
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~-~-----~l~~~~~~~~~~LSgGqkqrv~lar~l~~~p~illLDEPt~gLD~ 160 (200)
T PRK13540 95 CLYDIHFSPGAVGITELCRL-F-----SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE 160 (200)
T ss_pred HHHHHHCCCHHHHHHHHHHH-C-----CCHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 87554338316679999997-2-----975564497124999999999999999839998999177643899
No 313
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.95 E-value=0.54 Score=27.16 Aligned_cols=128 Identities=13% Similarity=0.060 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC------C-----------CEEEE------CCCCCHH
Q ss_conf 1377777655301683688706874148899999999963-022------3-----------23641------1675348
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG------H-----------GVAFF------SLEMDRE 183 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g------~-----------~Vl~f------SlEMs~~ 183 (266)
+...||++.--..+|+.+-+-|.-|.|||++.-.++--.- .+| . .+.|+ --.|+..
T Consensus 12 ~~~al~~is~~v~~Gei~gllGpNGAGKSTll~~i~Gl~~p~~G~i~i~G~~~~~~~~~~r~~ig~~pq~~~l~~~lTv~ 91 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW 91 (220)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHCCEEEECCCCCCCCCCHH
T ss_conf 99998582679889839999999987199999999769788962899999998839899982838990787679889999
Q ss_pred HHHHHHHHHHHCCCCC-----------CCC---HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH-----HHH
Q ss_conf 9999999963022323-----------478---555017889989999999999999729954747998898-----999
Q gi|254781149|r 184 KLGARALSNLLYPSSS-----------RIP---YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI-----MEF 244 (266)
Q Consensus 184 ql~~R~ls~~t~~~~s-----------~I~---~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti-----~~i 244 (266)
|.. ++.+.+-+++.. .+. ..+-+-+.++..+.+++.-|..-+.+-++.|-|.|...+ .+|
T Consensus 92 e~l-~~~~~l~g~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~ia~Al~~~P~lliLDEPt~gLDp~~~~~i 170 (220)
T cd03265 92 ENL-YIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170 (220)
T ss_pred HHH-HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 999-9999981999999999999999977996797370434799999999999998569998998088668899999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999947
Q gi|254781149|r 245 VHVANGLRNKHT 256 (266)
Q Consensus 245 ra~aR~~k~k~~ 256 (266)
+...+.++++++
T Consensus 171 ~~~i~~l~~~~g 182 (220)
T cd03265 171 WEYIEKLKEEFG 182 (220)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998389
No 314
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=92.92 E-value=0.34 Score=28.52 Aligned_cols=112 Identities=15% Similarity=0.028 Sum_probs=68.3
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC-------CCCEEEECCCC----C-HHHHHH-----------
Q ss_conf 777655301683688706874148899999999963-02-------23236411675----3-489999-----------
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS-------GHGVAFFSLEM----D-REKLGA----------- 187 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~-------g~~Vl~fSlEM----s-~~ql~~----------- 187 (266)
|+.+.--+.+|+-+.|.|+-|.|||+|.--|+-... .+ +..+.||+-+- . .+.+..
T Consensus 328 l~~vsl~i~~GeriaIvG~NGsGKSTLlk~L~G~l~p~~G~i~~~~~v~igy~~Q~~~~~l~~~~t~l~~~~~~~~~~~~ 407 (638)
T PRK10636 328 LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELE 407 (638)
T ss_pred CCCCCCEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCHHHHH
T ss_conf 13775056378479997478713889999972887888856998444433411076776506112499999885725469
Q ss_pred -HHHHHHHCCCCCCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCEEECCCC--CCHHHHHH
Q ss_conf -999963022323478555017--889989999999999999729954747998--89899999
Q gi|254781149|r 188 -RALSNLLYPSSSRIPYLNLIR--GEINQEQYRISQGICEKLQDFPLIIDDRPS--PGIMEFVH 246 (266)
Q Consensus 188 -R~ls~~t~~~~s~I~~~~l~~--g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~--~ti~~ira 246 (266)
++-..+. .-.++...+.+ +.||..|..|+.=|.--+.+.++-|-|.|. +.|.-+.+
T Consensus 408 ~~~r~~L~---~f~f~~~~~~~~v~~LSGGEk~Rl~LA~~l~~~pnlLiLDEPTNhLDi~s~e~ 468 (638)
T PRK10636 408 QKLRDYLG---GFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQA 468 (638)
T ss_pred HHHHHHHH---HCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf 99999998---66889778639113399999999999999825998899858876688899999
No 315
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.91 E-value=0.86 Score=25.73 Aligned_cols=121 Identities=12% Similarity=0.157 Sum_probs=74.4
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCC----------CE--------EE----------E
Q ss_conf 777655301683688706874148899999999963-0------223----------23--------64----------1
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGH----------GV--------AF----------F 176 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~----------~V--------l~----------f 176 (266)
||++---+.+|+++.|-|..|.|||++.--|+--.- . .|+ .+ +| |
T Consensus 15 L~~vs~~v~~Ge~~~iiGpSGsGKSTLlr~i~Gl~~p~~G~I~~~G~di~~~~~~~r~ig~vfQ~~~Lfp~~tV~eNi~~ 94 (235)
T cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAY 94 (235)
T ss_pred ECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHHHHHH
T ss_conf 90148798899899999999635999999997499999659999999999999767897894579866899909999999
Q ss_pred ---CCCCCHHHHHHHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHH
Q ss_conf ---167534899999999630223234785-550178899899999999999997299547479988989-----99999
Q gi|254781149|r 177 ---SLEMDREKLGARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHV 247 (266)
Q Consensus 177 ---SlEMs~~ql~~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~ 247 (266)
...+++.++..|..-.+.-+ ++.. .+-+-++|+..+..|+.-|-.-+.+-.+.+-|.|.-.++ +|+..
T Consensus 95 ~l~~~~~~~~e~~~rv~e~l~~~---gl~~~~~~~p~~LSGGq~QRVaiARAl~~~P~llllDEP~s~LD~~~~~~i~~~ 171 (235)
T cd03299 95 GLKKRKVDKKEIERKVLEIAEML---GIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE 171 (235)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHC---CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 99876999999999999999877---997787489445899999999999999738998999288764699999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999994
Q gi|254781149|r 248 ANGLRNKH 255 (266)
Q Consensus 248 aR~~k~k~ 255 (266)
.+++++++
T Consensus 172 l~~l~~~~ 179 (235)
T cd03299 172 LKKIRKEF 179 (235)
T ss_pred HHHHHHHH
T ss_conf 99999982
No 316
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=92.90 E-value=0.86 Score=25.73 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=62.8
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH--------HH------C-------CCCEEEECCCCC--------H
Q ss_conf 77765530168368870687414889999999996--------30------2-------232364116753--------4
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHM--------AM------S-------GHGVAFFSLEMD--------R 182 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~--------a~------~-------g~~Vl~fSlEMs--------~ 182 (266)
|+++.--+++|+.+-|.|.-|.|||+|+--++-.. .. . ...+.|++-++. .
T Consensus 276 l~~vs~~v~~GE~~~i~G~nGsGKSTLl~~l~G~~p~~~~g~i~l~g~~~~~g~~~~~~~~~ig~v~~~~~~~~~~~~~~ 355 (490)
T PRK10938 276 LNNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTTV 355 (490)
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECEECCCCCCHHHHHCCEEEECCCCCCCCCCCCCH
T ss_conf 85357898389889998678887999999980889767676189825124776637888605078624223355412309
Q ss_pred HH----------------------HHHHHHHHHHCCCCCCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 89----------------------999999963022323478555017--889989999999999999729954747998
Q gi|254781149|r 183 EK----------------------LGARALSNLLYPSSSRIPYLNLIR--GEINQEQYRISQGICEKLQDFPLIIDDRPS 238 (266)
Q Consensus 183 ~q----------------------l~~R~ls~~t~~~~s~I~~~~l~~--g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~ 238 (266)
.+ .+.+++.. -+++.....+ +.|+-.+..++.=|.--+.+-++.|-|.|.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~l~~~~~~~p~~~LSGGqqqrv~lAr~L~~~P~vLiLDEPT 429 (490)
T PRK10938 356 RNVILSGYFDSIGIYQAVSDRQQKLAQQWLDI------LGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPL 429 (490)
T ss_pred HHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHH------CCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 99997543321001103868999999999997------699835705952319999999999999997199989996875
Q ss_pred CCHH
Q ss_conf 8989
Q gi|254781149|r 239 PGIM 242 (266)
Q Consensus 239 ~ti~ 242 (266)
--++
T Consensus 430 ~gLD 433 (490)
T PRK10938 430 QGLD 433 (490)
T ss_pred CCCC
T ss_conf 4769
No 317
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.90 E-value=0.23 Score=29.72 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=60.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCC
Q ss_conf 77776553016836887068741488999999999630223236411675348999999996302232347855501788
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGE 210 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~ 210 (266)
-|+.+.--+.+|+.+.+-|+.|.|||+|.--++-... .......+.-. .++.+ -.+
T Consensus 15 vl~~is~~i~~ge~~~l~G~NGsGKTTl~~~l~G~~~-~~~G~i~~~~~-------------------~~i~y----~~Q 70 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGST-------------------VKIGY----FEQ 70 (144)
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCEEEEECCC-------------------CEEEE----EHH
T ss_conf 9963489987999999998999849999999848988-98509999996-------------------08998----700
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 998999999999999972995474799889899
Q gi|254781149|r 211 INQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 211 l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
|+..+..++.-|..-+.+.++.|-|.|.-.++.
T Consensus 71 LSgGqkqr~~la~al~~~p~iliLDEPt~~LD~ 103 (144)
T cd03221 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 799999999999997259989999577555899
No 318
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=92.89 E-value=0.28 Score=29.13 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 8368870687414889999999996302232364116753
Q gi|254781149|r 142 RELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMD 181 (266)
Q Consensus 142 g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs 181 (266)
...|=|-|.||.|||+|.-.++.....+|+.|.+....=|
T Consensus 29 a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPS 68 (267)
T pfam03308 29 AHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPS 68 (267)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 5599876899887999999999999968986899997899
No 319
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=92.88 E-value=0.45 Score=27.72 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC---------------CEEEECC--------
Q ss_conf 3777776553016836887068741488999999999630-------223---------------2364116--------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH---------------GVAFFSL-------- 178 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~---------------~Vl~fSl-------- 178 (266)
++.|+++.--+.+|+++.|-|+.|.|||+++--++--.-- .|+ .+.|..-
T Consensus 18 ~~~L~dIsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~Q~~~~~l~p 97 (228)
T cd03257 18 VKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCCCEEEEECCCHHHCCC
T ss_conf 89985607898699899999999986999999997289878866998996467799999997246379993281341286
Q ss_pred CCCHHHHHH-HHHHHHHCCC-----------CCCCCH-HHC---CCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH-
Q ss_conf 753489999-9999630223-----------234785-550---17889989999999999999729954747998898-
Q gi|254781149|r 179 EMDREKLGA-RALSNLLYPS-----------SSRIPY-LNL---IRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI- 241 (266)
Q Consensus 179 EMs~~ql~~-R~ls~~t~~~-----------~s~I~~-~~l---~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti- 241 (266)
-|+-.+... -+........ ...+.. ..+ +-++|+..|.+|+.-|..-+.+-++-|-|.|.-.+
T Consensus 98 ~~tv~e~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~p~~LSGGq~QRv~iAraL~~~P~iLllDEPTs~LD 177 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 (228)
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 47499999999998278752899999999997138985998744863279889999998211047999999948876479
Q ss_pred ----HHHHHHHHHHHHHH
Q ss_conf ----99999999999994
Q gi|254781149|r 242 ----MEFVHVANGLRNKH 255 (266)
Q Consensus 242 ----~~ira~aR~~k~k~ 255 (266)
.+|....+++++++
T Consensus 178 ~~~~~~i~~~l~~l~~~~ 195 (228)
T cd03257 178 VSVQAQILDLLKKLQEEL 195 (228)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999850
No 320
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=92.88 E-value=0.65 Score=26.59 Aligned_cols=121 Identities=16% Similarity=0.112 Sum_probs=71.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CC----------CEE-EE-C----CCCCHHH--
Q ss_conf 77777655301683688706874148899999999963-02------23----------236-41-1----6753489--
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GH----------GVA-FF-S----LEMDREK-- 184 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~----------~Vl-~f-S----lEMs~~q-- 184 (266)
..||++---+.+|+++.|-|..|.|||++.--|+--.. .+ |+ .+. +| + --|+..+
T Consensus 16 ~al~~vsl~i~~GE~~~llGpSGsGKSTLlr~iaGL~~p~sG~I~~~G~dv~~~~~~~r~Ig~vfQ~~~L~p~ltV~eNi 95 (352)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNI 95 (352)
T ss_pred EEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCCCCCEEEEECCCHHCCCCCHHHHH
T ss_conf 99906376999998999999998469999999976999995699999999998993008489994071214588099999
Q ss_pred -----------------HHHHHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH--
Q ss_conf -----------------99999996302232347855501---78899899999999999997299547479988989--
Q gi|254781149|r 185 -----------------LGARALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-- 242 (266)
Q Consensus 185 -----------------l~~R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-- 242 (266)
+-.|....+. .+....+. -++|+..+.+++.-|-.-+.+-.+.+-|.|.-.++
T Consensus 96 ~~gl~~~~~~~~~~~~~~~~rv~~~l~-----~vgL~~~~~r~p~~LSGGqrQRVaiARAL~~~P~vLLLDEPts~LD~~ 170 (352)
T PRK10851 96 AFGLTVLPRRERPNAAAIKAKVTQLLE-----MVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170 (352)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHH-----HCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 877754221137689999999999998-----759944760993149999999999999986599999990887668989
Q ss_pred ---HHHHHHHHHHHHH
Q ss_conf ---9999999999994
Q gi|254781149|r 243 ---EFVHVANGLRNKH 255 (266)
Q Consensus 243 ---~ira~aR~~k~k~ 255 (266)
+++...+++++++
T Consensus 171 ~r~~i~~~l~~L~~e~ 186 (352)
T PRK10851 171 VRKELRRWLRQLHEEL 186 (352)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999973
No 321
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=92.85 E-value=0.87 Score=25.68 Aligned_cols=110 Identities=14% Similarity=0.044 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHC
Q ss_conf 11377777655301683688706874148899999999963022323641167534899999999630223234785550
Q gi|254781149|r 127 WGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNL 206 (266)
Q Consensus 127 TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l 206 (266)
+....=++...=-|+|-++.+-|.||.|||++|-.+.......|+++.+.. .+.+-.-+-..++ ....+
T Consensus 428 ~~V~~~~R~~~~g~~~~~iw~tGlsgsGKstiA~~le~~L~~~g~~~~~LD----Gd~lR~gl~~dlg------f~~~d- 496 (613)
T PRK05506 428 LDVTREARAARKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYVLD----GDNVRHGLNRDLG------FTDAD- 496 (613)
T ss_pred CCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC----CHHHHHHHCCCCC------CCHHH-
T ss_conf 337999999974899769999778989747999999999997799879988----0898741045779------79899-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 1788998999999999999972995474799889899999999999
Q gi|254781149|r 207 IRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFVHVANGLR 252 (266)
Q Consensus 207 ~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k 252 (266)
-.|..+++...+.-|.+..+.+--..=--..+.|..+|.+-
T Consensus 497 -----R~enirR~~eva~l~~~aG~i~i~a~iSp~~~~R~~~r~~~ 537 (613)
T PRK05506 497 -----RVENIRRVAEVARLMADAGLIVLVSFISPFREERELARALI 537 (613)
T ss_pred -----HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf -----99999999999999986898899975889989999999757
No 322
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=92.84 E-value=0.88 Score=25.67 Aligned_cols=112 Identities=16% Similarity=0.111 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCC----------CEE-EE-C------------
Q ss_conf 377777655301683688706874148899999999963-0------223----------236-41-1------------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGH----------GVA-FF-S------------ 177 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~----------~Vl-~f-S------------ 177 (266)
...||++---+.+|+++.+-|..|+|||++.--+|--.. . .|+ .+. +| +
T Consensus 19 ~~al~~vsl~i~~Ge~~~llGpSG~GKTTlLr~iaGl~~p~~G~I~~~g~~v~~~~~~~R~i~~VfQ~~aLfPh~tV~eN 98 (351)
T PRK11432 19 NTVIDNLDLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTSGQIFIDGEDVTKRSIQQRDICMVFQSYALFPHMSLGEN 98 (351)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHH
T ss_conf 48984457498899899999999649999999997699988369999999999999545886999448876766809999
Q ss_pred ----C---CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf ----6---7534899999999630223234785550178899899999999999997299547479988989
Q gi|254781149|r 178 ----L---EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 178 ----l---EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
| -+++.++-.|+-..+.-+....+ .+-+-++|+..+..|+.-|-.-+.+-.+.+-|.|--.++
T Consensus 99 i~~~l~~~~~~~~e~~~rv~e~l~~v~L~~~--~~r~P~~LSGGq~QRValARAL~~~P~vlLlDEP~s~LD 168 (351)
T PRK11432 99 VGYGLKMLGVPKEERKQRVKEALELVDLAGF--EDRYVDQISGGQQQRVALARALVLKPKVLLFDEPLSNLD 168 (351)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCH--HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 9779987599999999999999976499661--458955789989999999999844998999868754369
No 323
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.82 E-value=0.37 Score=28.29 Aligned_cols=115 Identities=13% Similarity=0.164 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC-------------------------CEEEEC------
Q ss_conf 3777776553016836887068741488999999999630223-------------------------236411------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGH-------------------------GVAFFS------ 177 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~-------------------------~Vl~fS------ 177 (266)
-+.|+++.--+.+|+.+.|-|+.|.|||++.--++.-.-.+|. .+.+|+
T Consensus 17 ~~vL~~isf~I~~Ge~vaIvG~sGsGKSTLl~lL~gl~~~~G~I~idg~~i~~~~~~~~r~~i~~vpQ~~~lf~~Ti~eN 96 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred CCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHH
T ss_conf 66242507998799999999999997999999996035789539999880673689999763899665563267419997
Q ss_pred C----CCCHHHHHHHHHHHHHCCC------CCCCCHHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHH
Q ss_conf 6----7534899999999630223------234785550178-899899999999999997299547479988989999
Q gi|254781149|r 178 L----EMDREKLGARALSNLLYPS------SSRIPYLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFV 245 (266)
Q Consensus 178 l----EMs~~ql~~R~ls~~t~~~------~s~I~~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ir 245 (266)
+ +.+.+++. +.+... ++. ..+++..--..| .|+..++.++.=|-.-+.+.+++|-|.|.-.++-.-
T Consensus 97 l~~~~~~~~~~i~-~~~~~~-~l~~~i~~lp~~ld~~~~~~g~~LSgGqkQrl~lARaLl~~p~IllLDEpTs~LD~~t 173 (275)
T cd03289 97 LDPYGKWSDEEIW-KVAEEV-GLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT 173 (275)
T ss_pred CCCCCCCCHHHHH-HHHHHH-CHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 0321222889999-999997-6699998573667403268887239999999999999951999899979766899999
No 324
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=92.81 E-value=0.88 Score=25.65 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=17.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf 368870687414889999999996302232364116753489
Q gi|254781149|r 143 ELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREK 184 (266)
Q Consensus 143 ~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~q 184 (266)
|++++-.-||.+..++.. .+....-|++.+-|.+.-+
T Consensus 114 D~iliD~~aGl~~~~~~~-----~~~sd~~viVt~pe~~si~ 150 (262)
T COG0455 114 DYILIDTGAGLSRDTLSF-----ILSSDELVIVTTPEPTSIT 150 (262)
T ss_pred CEEEEECCCCCCHHHHHH-----HHHCCCEEEEECCCCCHHH
T ss_conf 999996899966888999-----8736817999279852089
No 325
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=92.79 E-value=0.89 Score=25.63 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=67.8
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-HH------CCCC-------------EEEEC---------CCCC
Q ss_conf 777765530168368870687414889999999996-30------2232-------------36411---------6753
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM-AM------SGHG-------------VAFFS---------LEMD 181 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~-a~------~g~~-------------Vl~fS---------lEMs 181 (266)
.++++---+++|+.+-|.|..|.|||+++-.++--. .. .|++ +.|++ ..|+
T Consensus 267 ~l~~vs~~v~~GEi~gi~G~nGsGKsTL~~~l~Gl~~~~~G~v~~~G~~i~~~~~~~~~~~~i~~v~~dr~~~~l~~~~s 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCCEECHHHHHCCCCCCCC
T ss_conf 65634447668818996678887688999998187677777699999988877989998617844512333147667880
Q ss_pred HHHHH-HHH---HHHHH--------------CCCCCCCCHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH
Q ss_conf 48999-999---99630--------------2232347855501--7889989999999999999729954747998898
Q gi|254781149|r 182 REKLG-ARA---LSNLL--------------YPSSSRIPYLNLI--RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI 241 (266)
Q Consensus 182 ~~ql~-~R~---ls~~t--------------~~~~s~I~~~~l~--~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti 241 (266)
-.+-. ... ++... .+..-.+...... -+.|+-.+..++.-|..-+.+-++.|-|.|.--+
T Consensus 347 v~en~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSGGq~Qrv~iAraL~~~p~lLilDEPT~GL 426 (501)
T PRK10762 347 VKENMSLTALDYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99988788788653301325789999999999975288630011770209999999999999997299889997986689
Q ss_pred H-----HHHHHHHHHH
Q ss_conf 9-----9999999999
Q gi|254781149|r 242 M-----EFVHVANGLR 252 (266)
Q Consensus 242 ~-----~ira~aR~~k 252 (266)
+ +|..-.|+++
T Consensus 427 D~~~~~~i~~ll~~l~ 442 (501)
T PRK10762 427 DVGAKKEIYQLINQFK 442 (501)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 326
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein; InterPro: IPR013505 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=92.79 E-value=0.11 Score=32.09 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=74.4
Q ss_pred CCCCHHH-HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC--C------CC----------------------
Q ss_conf 8511137-777765530168368870687414889999999996302--2------32----------------------
Q gi|254781149|r 124 DIKWGLQ-SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMS--G------HG---------------------- 172 (266)
Q Consensus 124 Gi~TG~~-~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~--g------~~---------------------- 172 (266)
-.+.|.. +||+++=-+.+|||+.+.|-.|.|||+| +++.+.+.+- | ++
T Consensus 10 ~Y~g~~~~AL~~~~~~~~kGem~fL~GHSGaGKST~-lkLi~~~~~P~~G~i~~~G~d~~~L~~r~~P~LRr~iG~VFQD 88 (216)
T TIGR00960 10 AYPGGAQPALDNVTFHIDKGEMVFLVGHSGAGKSTL-LKLILGIEKPTRGKIRFSGQDLTRLRGREVPFLRRHIGMVFQD 88 (216)
T ss_pred CCCCCCCHHHCCCEEEECCCCEEEEECCCCCCHHHH-HHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEECCEEECC
T ss_conf 254324410038647853850799856888607899-9999852289986078715421001577467300010426701
Q ss_pred --------E---EEECCC---CCHHHHHHHHHHHHHCCCCCCCCHHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf --------3---641167---534899999999630223234785550178-8998999999999999972995474799
Q gi|254781149|r 173 --------V---AFFSLE---MDREKLGARALSNLLYPSSSRIPYLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRP 237 (266)
Q Consensus 173 --------V---l~fSlE---Ms~~ql~~R~ls~~t~~~~s~I~~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~ 237 (266)
| ..|.|+ |+.+++-.|.-+.+--| ++....-+.- +||-.|..|+.-|=.-..+-++-+=|.|
T Consensus 89 ~~LL~drtv~dNVa~pL~iiG~~~~~~~~rv~~aL~~V---GL~~K~~~lP~~LSGGEQQRv~IARA~V~~P~lLLADEP 165 (216)
T TIGR00960 89 HRLLSDRTVYDNVALPLRIIGVPGRDINERVSAALEKV---GLKGKAHALPVQLSGGEQQRVAIARAVVNKPALLLADEP 165 (216)
T ss_pred HHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC---CCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECC
T ss_conf 15531165545524335522899742678999998730---611212407620048503455664443067970131088
Q ss_pred CCCHHHHHH
Q ss_conf 889899999
Q gi|254781149|r 238 SPGIMEFVH 246 (266)
Q Consensus 238 ~~ti~~ira 246 (266)
+=|++.=-|
T Consensus 166 TGNLD~~~S 174 (216)
T TIGR00960 166 TGNLDPELS 174 (216)
T ss_pred CCCCCHHHH
T ss_conf 988788889
No 327
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=92.77 E-value=0.9 Score=25.60 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCC---------------CE-EEE-----CC--
Q ss_conf 377777655301683688706874148899999999963-0------223---------------23-641-----16--
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGH---------------GV-AFF-----SL-- 178 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~---------------~V-l~f-----Sl-- 178 (266)
...||++---+++|+.+.|.|..|.|||+++..++--.. . .|+ .| .+| ||
T Consensus 25 ~~~l~~vs~~i~~GE~l~ivGeSGsGKSTL~r~i~gl~~p~sG~I~~~g~~l~~~~~~~~~~~rr~i~~VfQ~~~~slnP 104 (266)
T PRK10419 25 QAVLNNVSLTLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNISWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP 104 (266)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEEEECCHHHCCH
T ss_conf 68885817588899899999999977999999996699999629988999567589999999754738997391363681
Q ss_pred ----------------CCCHHHHHHHHHHHHHCCCCCCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf ----------------753489999999963022323478555017--88998999999999999972995474799889
Q gi|254781149|r 179 ----------------EMDREKLGARALSNLLYPSSSRIPYLNLIR--GEINQEQYRISQGICEKLQDFPLIIDDRPSPG 240 (266)
Q Consensus 179 ----------------EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~--g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~t 240 (266)
.++..+...|+...+.. -+++...+.+ .+|+..+..|+.-|..-+.+-.+.|.|.|.-.
T Consensus 105 ~~tv~~~i~epl~~~~~~~~~~~~~~~~~~L~~---vgL~~~~~~~yP~eLSGGq~QRVaIArAL~~~P~lLi~DEPtsa 181 (266)
T PRK10419 105 RKTVREILREPLRHLLSLDKAERLARASEMLKA---VDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSN 181 (266)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCHHHHHCCHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 648999999999981499999999999999987---49988987178433792787778986664069878999688653
Q ss_pred HH-----HHHHHHHHHHHHH
Q ss_conf 89-----9999999999994
Q gi|254781149|r 241 IM-----EFVHVANGLRNKH 255 (266)
Q Consensus 241 i~-----~ira~aR~~k~k~ 255 (266)
++ +|..-.+++++++
T Consensus 182 LD~~~q~~il~ll~~l~~~~ 201 (266)
T PRK10419 182 LDLVLQAGVIRLLKKLQQQF 201 (266)
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 69999999999999999975
No 328
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=92.76 E-value=0.9 Score=25.60 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=73.3
Q ss_pred CCCHHHH-HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH--CCCC-EEEE-CCCCCHHHHHHHHHHHHHCC---
Q ss_conf 5111377-7776553016836887068741488999999999630--2232-3641-16753489999999963022---
Q gi|254781149|r 125 IKWGLQS-VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM--SGHG-VAFF-SLEMDREKLGARALSNLLYP--- 196 (266)
Q Consensus 125 i~TG~~~-LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~--~g~~-Vl~f-SlEMs~~ql~~R~ls~~t~~--- 196 (266)
.+.+-.. |.+..|=++||||+=|=|-.|-|||++.--+|..... ++.| |... -.-+.+++ +.++.|-.-..
T Consensus 40 ~~~p~K~lL~~vSG~a~~GeLlA~mGsSGAGKTTLmn~La~R~~~g~~~~g~~v~lNG~~~~~~~-~~~~saYvqQ~Dlf 118 (671)
T TIGR00955 40 ISVPRKHLLKNVSGVAKPGELLAIMGSSGAGKTTLMNALAFRSPKGLKVSGSVVLLNGRPIDAKE-MRAISAYVQQDDLF 118 (671)
T ss_pred CCCCCHHHHHCCCEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEECCCEEEECCEECCHHH-HHHHHCHHEEHHHC
T ss_conf 65652011103520210670689847876626899999853374786146836787583758689-98540122011004
Q ss_pred -------------------------------------CCCCCCHHHCCCC------CCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf -------------------------------------3234785550178------899899999999999997299547
Q gi|254781149|r 197 -------------------------------------SSSRIPYLNLIRG------EINQEQYRISQGICEKLQDFPLII 233 (266)
Q Consensus 197 -------------------------------------~~s~I~~~~l~~g------~l~~~e~~~i~~a~~~l~~~pl~I 233 (266)
..+=.++.+.+-| -|+-.|.+|+.=|.+-|.+-+|-+
T Consensus 119 ~~~LTv~E~L~f~A~lRm~~~~~~~~~k~~rV~~vl~~l~L~~ca~T~IG~pg~~KGlSGGErKRLafA~E~ltdP~~LF 198 (671)
T TIGR00955 119 IPTLTVREHLMFQAHLRMKRRVTKKHEKRERVDEVLQALGLRKCADTRIGIPGRVKGLSGGERKRLAFASELLTDPIILF 198 (671)
T ss_pred CCCCCHHEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEE
T ss_conf 88510300001012233476676057999999999986042112113437999645520113678998878871894265
Q ss_pred ECCCCCCHHHHHH
Q ss_conf 4799889899999
Q gi|254781149|r 234 DDRPSPGIMEFVH 246 (266)
Q Consensus 234 dD~~~~ti~~ira 246 (266)
+|.|.--++-.-|
T Consensus 199 cDEPTSGLDSfmA 211 (671)
T TIGR00955 199 CDEPTSGLDSFMA 211 (671)
T ss_pred ECCCCCHHHHHHH
T ss_conf 0388953459999
No 329
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=92.75 E-value=0.9 Score=25.59 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH---------CCC----------CE-EEE------------
Q ss_conf 3777776553016836887068741488999999999630---------223----------23-641------------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM---------SGH----------GV-AFF------------ 176 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~---------~g~----------~V-l~f------------ 176 (266)
...||++.--+.+|+++.|-|..|+|||++.--||--.-- .|+ ++ .+|
T Consensus 18 ~~al~dvsl~i~~GE~~~llGpSG~GKTTlLr~iaGL~~p~~~~G~I~~~g~~v~~~~~~~R~ig~VFQ~~aLfPhltV~ 97 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVE 97 (362)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCHH
T ss_conf 88993767199999899999999745999999997776777881799999999998998889948971798536898099
Q ss_pred -----C---CCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH-HHHH
Q ss_conf -----1---675348999999996302232347855501788998999999999999972995474799889899-9999
Q gi|254781149|r 177 -----S---LEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME-FVHV 247 (266)
Q Consensus 177 -----S---lEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~-ira~ 247 (266)
. ..|++.++..|+...+--+..+.. .+-+-.+|+..+.+|+.-|-.-..+-.+.+-|.|--.++. +|..
T Consensus 98 eNia~~L~~~~~~~~e~~~rv~e~l~~vgL~~~--~~r~P~~LSGGq~QRVAlARAL~~~P~ilLlDEP~saLD~~~r~~ 175 (362)
T TIGR03258 98 DNVAFGLRAQKMPKADIAERVADALKLVGLGDA--AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRAN 175 (362)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH--HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH
T ss_conf 999899986599999999999999877899678--626966789989999999999755999899818876559999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254781149|r 248 ANG 250 (266)
Q Consensus 248 aR~ 250 (266)
.|.
T Consensus 176 l~~ 178 (362)
T TIGR03258 176 MRE 178 (362)
T ss_pred HHH
T ss_conf 999
No 330
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.75 E-value=0.62 Score=26.73 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=48.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCC-EEEECCCCC-HHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHH--HHHHH
Q ss_conf 8870687414889999999996302232-364116753-4899999999630223234785550178899899--99999
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHG-VAFFSLEMD-REKLGARALSNLLYPSSSRIPYLNLIRGEINQEQ--YRISQ 220 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~-Vl~fSlEMs-~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e--~~~i~ 220 (266)
++|-|-||.|||++|-.++...-.-+.. ..+|--++. ..++..++-. -+..|++-+++ +..+.
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~-------------~i~~g~lv~d~i~~~~v~ 69 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKK-------------YIDKGELVPDEIVNGLVK 69 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHCCCCHHHHHHHH-------------HHHCCCCCCHHHHHHHHH
T ss_conf 9998999998899999999976997855220111100323689999999-------------987589504176997999
Q ss_pred HHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999999729954747998898999999999999
Q gi|254781149|r 221 GICEKLQDFPLIIDDRPSPGIMEFVHVANGLRN 253 (266)
Q Consensus 221 ~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k~ 253 (266)
....+......+|-|.---|+.+.++--|.++.
T Consensus 70 ~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~ 102 (178)
T COG0563 70 ERLDEADCKAGFILDGFPRTLCQARALKRLLKE 102 (178)
T ss_pred HHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 999750657729998998369999999999986
No 331
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.74 E-value=0.35 Score=28.44 Aligned_cols=115 Identities=12% Similarity=0.027 Sum_probs=68.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC------CC------------------------------CE
Q ss_conf 7777765530168368870687414889999999996302------23------------------------------23
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMS------GH------------------------------GV 173 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~------g~------------------------------~V 173 (266)
+-|+++---+.||+.+-|-|+.|.|||+++.-+....-.+ |. ++
T Consensus 364 ~vL~~is~~i~~Ge~vaIVG~SGsGKSTl~~LL~g~~p~~G~I~i~g~di~~i~~~~lr~~i~~V~Q~~~LF~~TI~eNI 443 (588)
T PRK11174 364 TLAGPLNFTLPAGQRVALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLFHGTLRDNV 443 (588)
T ss_pred EECCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHH
T ss_conf 51036469974997899989998649999999987289883899999860308999999660351666777766299865
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCC----CCHHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf 641167534899999999630223234----785550178-89989999999999999729954747998898999
Q gi|254781149|r 174 AFFSLEMDREKLGARALSNLLYPSSSR----IPYLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 174 l~fSlEMs~~ql~~R~ls~~t~~~~s~----I~~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
.+..-+.+.+++..=+-...-.--... .+..-=.+| .|+..|..++.=|-.-+++.|+.|-|.|.-+++..
T Consensus 444 ~~g~~~atdeei~~A~~~a~~~~~I~~Lp~GldT~vge~G~~LSGGQrQRiaiARAll~~~~ILILDEaTSaLD~~ 519 (588)
T PRK11174 444 LLANPDASDEQLQQALENAWVSEFVPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519 (588)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 3358543345799999986247899845132236322888877999999999999983798989998987798999
No 332
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=92.68 E-value=0.19 Score=30.29 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=30.8
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 870687414889999999996302232364116753
Q gi|254781149|r 146 LIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMD 181 (266)
Q Consensus 146 viaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs 181 (266)
+..-.-|+|||+.+.|+|...+..|++|++..+...
T Consensus 4 ~~n~KGGvGKtt~~~~la~~~a~~g~~vl~iD~DpQ 39 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 973899876899999999999977992999977988
No 333
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=92.65 E-value=0.93 Score=25.50 Aligned_cols=111 Identities=20% Similarity=0.190 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-----------C----------------CCCE-EEEC---
Q ss_conf 3777776553016836887068741488999999999630-----------2----------------2323-6411---
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-----------S----------------GHGV-AFFS--- 177 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-----------~----------------g~~V-l~fS--- 177 (266)
+..+|++---+.+|+.+-|.|..|.|||+++..+.--.-. . |+.+ ++|-
T Consensus 20 v~Av~~Vsf~i~~GEilgivGeSGsGKSTl~~~ilgll~~~~~~~~g~i~~~g~dl~~~~~~~~~~~~g~~i~~vfQdp~ 99 (327)
T PRK11022 20 FKAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (327)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCEECCCCCHHHHHHHHCCCEEEEECCCH
T ss_conf 99984418798899999999999878999999997488989976542799999997749999999863776699960851
Q ss_pred --C------------------CCCHHHHHHHHHHHHHCCCCCCCCH--HHCC--CCCCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf --6------------------7534899999999630223234785--5501--78899899999999999997299547
Q gi|254781149|r 178 --L------------------EMDREKLGARALSNLLYPSSSRIPY--LNLI--RGEINQEQYRISQGICEKLQDFPLII 233 (266)
Q Consensus 178 --l------------------EMs~~ql~~R~ls~~t~~~~s~I~~--~~l~--~g~l~~~e~~~i~~a~~~l~~~pl~I 233 (266)
| -++..+...|.+..+.. -+++. ..+. -++|+-.+.+|+.-|..-+.+-.|.|
T Consensus 100 ~sLnP~~tv~~~i~e~l~~~~~~~~~~~~~r~~elL~~---vgl~~~~~~l~~yP~eLSGGq~QRV~IArAL~~~P~lLI 176 (327)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQ---VGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLI 176 (327)
T ss_pred HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---HCCCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 32074555557677788875278889999999999987---158568889742855469999999999999970999999
Q ss_pred ECCCCCCHH
Q ss_conf 479988989
Q gi|254781149|r 234 DDRPSPGIM 242 (266)
Q Consensus 234 dD~~~~ti~ 242 (266)
-|.|.-.++
T Consensus 177 aDEPTsaLD 185 (327)
T PRK11022 177 ADEPTTALD 185 (327)
T ss_pred ECCCCCCCC
T ss_conf 838876579
No 334
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.64 E-value=0.76 Score=26.09 Aligned_cols=123 Identities=20% Similarity=0.147 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C------CC--------CEEEE------CCCCCHHHHHH
Q ss_conf 3777776553016836887068741488999999999630-2------23--------23641------16753489999
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-S------GH--------GVAFF------SLEMDREKLGA 187 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~------g~--------~Vl~f------SlEMs~~ql~~ 187 (266)
...||++.--+.+|+.+-+-|+-|.|||++.--++--..- + |+ .+.|+ -..|+..|..
T Consensus 13 ~~al~~vs~~v~~Gei~gllG~NGaGKTTll~~i~Gl~~p~~G~i~i~G~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l- 91 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQL- 91 (210)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHCCEEEECCCCCCCCCCCHHHHH-
T ss_conf 9997542678879959999989998499999999600266899899999868844360199964766679999999999-
Q ss_pred HHHHHHHCCCCC-----------CCCHH---HCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHH
Q ss_conf 999963022323-----------47855---50178899899999999999997299547479988989-----999999
Q gi|254781149|r 188 RALSNLLYPSSS-----------RIPYL---NLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVA 248 (266)
Q Consensus 188 R~ls~~t~~~~s-----------~I~~~---~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~a 248 (266)
++++.+.+++.. .+... +-+-+.|+-.+.+++.=|..-+.+.++.|-|.|.-.++ +++...
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrv~la~al~~~p~lllLDEPt~gLDp~~~~~i~~~i 171 (210)
T cd03269 92 VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVI 171 (210)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99999749999999999999999869970548805778998999999999995799899992886679999999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781149|r 249 NGLR 252 (266)
Q Consensus 249 R~~k 252 (266)
+.++
T Consensus 172 ~~~~ 175 (210)
T cd03269 172 RELA 175 (210)
T ss_pred HHHH
T ss_conf 9999
No 335
>PRK06761 hypothetical protein; Provisional
Probab=92.62 E-value=0.17 Score=30.64 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=9.2
Q ss_pred HHHHCCC--EEECCCCCCHHHHHH
Q ss_conf 9972995--474799889899999
Q gi|254781149|r 225 KLQDFPL--IIDDRPSPGIMEFVH 246 (266)
Q Consensus 225 ~l~~~pl--~IdD~~~~ti~~ira 246 (266)
-+..+|+ ++-|.+.-.....++
T Consensus 246 il~~L~i~k~~I~ns~~~~~~~~~ 269 (281)
T PRK06761 246 ILDMLKVKKEKINITKEEIDSYRS 269 (281)
T ss_pred HHHHCCCCEEECCCCCCCHHHHHH
T ss_conf 997088650565775237799999
No 336
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=92.59 E-value=0.12 Score=31.71 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=31.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEE--EECCCCCHHHHHHHH
Q ss_conf 887068741488999999999630223236--411675348999999
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVA--FFSLEMDREKLGARA 189 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl--~fSlEMs~~ql~~R~ 189 (266)
+++-|.||.|||+++..+|.... +.++. -++-.|+..++....
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~--~~~~~~i~~~~~~~~~dl~G~~ 46 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALS--NRPVFYVQLTRDTTEEDLKGRR 46 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCC--CCCCHHHCCCCCCCHHHCCCCE
T ss_conf 89998997569999999999807--9831112146556522205734
No 337
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.56 E-value=0.95 Score=25.42 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=73.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCC----------CEE-EE---------------
Q ss_conf 77777655301683688706874148899999999963-0------223----------236-41---------------
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGH----------GVA-FF--------------- 176 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~----------~Vl-~f--------------- 176 (266)
..||++---+.+|+.+.|-|..|+|||++.--++--.- . .|+ .|. +|
T Consensus 14 ~~l~~isl~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~~p~~G~I~~~g~~i~~~~~~~R~ig~VfQ~~~LfP~ltV~eNI 93 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI 93 (213)
T ss_pred EEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHH
T ss_conf 99876177986998999999998809999999976999986399999999999997678878994587646547099999
Q ss_pred --CC---CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHH
Q ss_conf --16---7534899999999630223234785550178899899999999999997299547479988989-----9999
Q gi|254781149|r 177 --SL---EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVH 246 (266)
Q Consensus 177 --Sl---EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira 246 (266)
.+ -++++++-.|....+-.+..+.. .+-+-++|+..+..|+.-|-.-+.+-++.+-|.|--.++ +|+.
T Consensus 94 ~~~l~~~~~~~~e~~~~v~~~l~~~gl~~~--~~~~P~~LSGGqkQRVaiARAl~~~P~lLLlDEP~saLD~~~r~~i~~ 171 (213)
T cd03301 94 AFGLKLRKVPKDEIDERVREVAELLQIEHL--LDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171 (213)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCHHH--HCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 989998599989999999999987599246--509955699999999999999875999899838876429899999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254781149|r 247 VANGLRNK 254 (266)
Q Consensus 247 ~aR~~k~k 254 (266)
..+++.++
T Consensus 172 ~l~~~~~~ 179 (213)
T cd03301 172 ELKRLQQR 179 (213)
T ss_pred HHHHHHHH
T ss_conf 99999997
No 338
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.53 E-value=0.96 Score=25.39 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=62.6
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CC-CCEEEECCCCC---H-HHHHHHHHHHHHCCCCCCCCHHHCCCCCCC
Q ss_conf 016836887068741488999999999630-22-32364116753---4-899999999630223234785550178899
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMAM-SG-HGVAFFSLEMD---R-EKLGARALSNLLYPSSSRIPYLNLIRGEIN 212 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g-~~Vl~fSlEMs---~-~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~ 212 (266)
+..|-.+-+-|.+|+|||+..--+|-+.+. .| +.|.+++..== . +|| |..+.+- +|+..-..
T Consensus 345 ~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL--~~y~~il-----gvpv~~~~----- 412 (557)
T PRK12727 345 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQL--HSYGRQL-----GIAVHEAD----- 412 (557)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH--HHHHHHH-----CCEEEEEC-----
T ss_conf 54076478743777673117999999999973998189997266408799999--9999983-----97579828-----
Q ss_pred HHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf 89999999999999729954747998898999
Q gi|254781149|r 213 QEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 213 ~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
+-..+..++.++.+..|.+-||++++-.+.
T Consensus 413 --~~~~l~~~l~~l~~~~lvliDTaG~~~rd~ 442 (557)
T PRK12727 413 --SAESLLDLLERLRDYKLVLIDTAGMGQRDR 442 (557)
T ss_pred --CHHHHHHHHHHHCCCCEEEEECCCCCCCCH
T ss_conf --999999999983699989994999884699
No 339
>pfam00931 NB-ARC NB-ARC domain.
Probab=92.52 E-value=0.63 Score=26.66 Aligned_cols=41 Identities=5% Similarity=-0.110 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHH
Q ss_conf 48999999996302232347855501788998999999999
Q gi|254781149|r 182 REKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGI 222 (266)
Q Consensus 182 ~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a 222 (266)
-++++..++....|.+.+=.-...+-+++-+..+|+.+.+.
T Consensus 180 l~~~~~~Iv~~C~GlPLai~~lg~~L~~k~~~~~W~~~l~~ 220 (285)
T pfam00931 180 LEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQ 220 (285)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999999998589949999999997179989999999997
No 340
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=92.50 E-value=0.25 Score=29.46 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-HHC------CCC----------------------------
Q ss_conf 137777765530168368870687414889999999996-302------232----------------------------
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM-AMS------GHG---------------------------- 172 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~-a~~------g~~---------------------------- 172 (266)
+-+.|+++.--+.+|+.+.|-|++|.|||+|+--+..-. ..+ |.+
T Consensus 14 ~~~~L~~is~~i~~G~~vaivG~sGsGKSTll~ll~gl~~p~~G~I~i~g~di~~~~~~~~r~~i~~v~Q~~~lf~~Ti~ 93 (237)
T cd03252 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCHH
T ss_conf 95725150899879999999999998599999999677657987899999995518999998601899587715578289
Q ss_pred --EEEECCCCCHHHHHHHHHHHHHCCCC--CCCCHH--H-CC-CC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf --36411675348999999996302232--347855--5-01-78-8998999999999999972995474799889899
Q gi|254781149|r 173 --VAFFSLEMDREKLGARALSNLLYPSS--SRIPYL--N-LI-RG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 173 --Vl~fSlEMs~~ql~~R~ls~~t~~~~--s~I~~~--~-l~-~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
+.|..-+.+.+++..- +. ..++.. ...|.. . +- .| .|+..++.++.-|-.-+.+.|++|-|.|.-.++.
T Consensus 94 eNi~~g~~~~~~~~i~~a-~~-~~~l~~~i~~l~~g~~t~i~~~g~~LSgGqkQRlalARall~~~~illlDEpts~LD~ 171 (237)
T cd03252 94 DNIALADPGMSMERVIEA-AK-LAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDY 171 (237)
T ss_pred HHHHCCCCCCCHHHHHHH-HH-HHCCHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 887238999999999999-99-9685444663666662055797884899999999999999669999999486456898
Q ss_pred H
Q ss_conf 9
Q gi|254781149|r 244 F 244 (266)
Q Consensus 244 i 244 (266)
.
T Consensus 172 ~ 172 (237)
T cd03252 172 E 172 (237)
T ss_pred H
T ss_conf 9
No 341
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.50 E-value=0.4 Score=28.06 Aligned_cols=121 Identities=14% Similarity=0.103 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC-------------CEEEEC------CCCC
Q ss_conf 13777776553016836887068741488999999999630-------223-------------236411------6753
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH-------------GVAFFS------LEMD 181 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~-------------~Vl~fS------lEMs 181 (266)
+.+.||++.--+.+|+.+.+-|+-|.|||++.--|+--..- .|+ .+.|.. -.||
T Consensus 12 ~~~~l~~vs~~v~~Gei~~llGpNGAGKSTll~~i~Gl~~p~~G~I~~~g~di~~~~~~~r~r~gig~~pQ~~~l~~~lt 91 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCCC
T ss_conf 99988260679899959999999996199999999779999862999999999999999999719798777776788888
Q ss_pred HHH---------------HHHHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH---
Q ss_conf 489---------------9999999630223234785-550178899899999999999997299547479988989---
Q gi|254781149|r 182 REK---------------LGARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM--- 242 (266)
Q Consensus 182 ~~q---------------l~~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~--- 242 (266)
..| ...|+-..+.. -++.. .+-.-+.|+-.+.+++.-|..-+.+-++.+-|.|...++
T Consensus 92 V~enl~~~~~~~~~~~~~~~~~~~~~l~~---~~L~~~~~~~~~~LSgG~~qrv~iAraL~~~P~illlDEPt~GLDp~~ 168 (232)
T cd03218 92 VEENILAVLEIRGLSKKEREEKLEELLEE---FHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA 168 (232)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHH
T ss_conf 99999999997299999999999999987---698246539425599999999999999966999999889856889999
Q ss_pred --HHHHHHHHH
Q ss_conf --999999999
Q gi|254781149|r 243 --EFVHVANGL 251 (266)
Q Consensus 243 --~ira~aR~~ 251 (266)
+|+...+.+
T Consensus 169 ~~~i~~~i~~l 179 (232)
T cd03218 169 VQDIQKIIKIL 179 (232)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 342
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.49 E-value=0.97 Score=25.36 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=16.1
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 77776553016836887068741488999999
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALST 162 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alni 162 (266)
.||++.--+.+|+++.|-|.-|.|||++...+
T Consensus 22 aL~~vsl~I~~Ge~~~iiG~nGsGKSTLl~~l 53 (286)
T PRK13641 22 GLDNISFELEDGSFVALIGHTGSGKSTLMQHF 53 (286)
T ss_pred EEEEEEEEECCCCEEEEECCCCCHHHHHHHHH
T ss_conf 24310679869999999999983999999999
No 343
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=92.49 E-value=0.68 Score=26.45 Aligned_cols=124 Identities=14% Similarity=0.084 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEC-------------------------CCCCHH
Q ss_conf 3777776553016836887068741488999999999630223236411-------------------------675348
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFS-------------------------LEMDRE 183 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fS-------------------------lEMs~~ 183 (266)
...||++.--+++|+++.|-|.-|.|||++.-.++--.--..-.|.++- ..|+..
T Consensus 15 ~~~L~~Vsl~I~~GEi~gLIGPNGAGKSTLLk~I~Gll~P~~G~V~l~G~~i~~~~~~elar~ia~vpQ~~~l~~~~tv~ 94 (409)
T PRK09536 15 TTILDGVDLSVREGHLVGVVGPNGAGKTTLLRAMNGLITPTAGTVLVAGDDVHALSAAAASRQVATVPQDTSLSFEFDVR 94 (409)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHEEECCCCCCCCCCCHH
T ss_conf 99892508898899899999998727999999996688889639999999988799899962334843334667787799
Q ss_pred HHHHH--H--HHHHH---CC-------CCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH----
Q ss_conf 99999--9--99630---22-------32347855501---78899899999999999997299547479988989----
Q gi|254781149|r 184 KLGAR--A--LSNLL---YP-------SSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM---- 242 (266)
Q Consensus 184 ql~~R--~--ls~~t---~~-------~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~---- 242 (266)
++..- . .+... .. ....+....+. -+.|+..|.+++.=|..-+++.++.|-|.|.-.++
T Consensus 95 e~V~~Gr~p~~~~~~~~~~~d~~~v~~aLe~~~l~~l~dr~~~~LSGGqrQRV~IARALaq~P~ILLLDEPTs~LDi~~q 174 (409)
T PRK09536 95 QVVEMGRTPHRSRFGTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQ 174 (409)
T ss_pred HHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 99982502333203675789999999999874997685588002899999999999999679998999587667999999
Q ss_pred -HHHHHHHHHH
Q ss_conf -9999999999
Q gi|254781149|r 243 -EFVHVANGLR 252 (266)
Q Consensus 243 -~ira~aR~~k 252 (266)
++....|+++
T Consensus 175 ~ell~lLr~L~ 185 (409)
T PRK09536 175 IRTLELVRDLA 185 (409)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 344
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.48 E-value=0.14 Score=31.18 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 85111377777655301683688706874148899999999963
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a 167 (266)
-+.||++.+|-++- +.+|+=+-|=|-+|+|||++...++.++.
T Consensus 123 ~l~TGIraID~l~p-ig~GQRigIfgg~GvGKt~Ll~~i~~~~~ 165 (418)
T TIGR03498 123 PLDTGVRVIDTFLP-LCRGQRLGIFAGSGVGKSTLLSMLARNTD 165 (418)
T ss_pred CCCCCCCHHHHCCC-CCCCCEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 43157602120155-02576641137899988899999987507
No 345
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.46 E-value=0.75 Score=26.15 Aligned_cols=110 Identities=16% Similarity=0.123 Sum_probs=63.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH--CCCCEEEEC-------------------------------
Q ss_conf 77776553016836887068741488999999999630--223236411-------------------------------
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM--SGHGVAFFS------------------------------- 177 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~--~g~~Vl~fS------------------------------- 177 (266)
.||++---+.+|+++.|-|+.|.|||+|. ++....-. +| .|.++.
T Consensus 13 vL~~vsl~i~~Ge~~~i~GpSGsGKSTLL-~~i~gl~~p~sG-~i~~~g~~~~~~~~~~~~~~rr~~iG~VfQ~~~L~~~ 90 (206)
T TIGR03608 13 ILDDLNLTIEKGKMVAIVGESGSGKSTLL-NIIGLLEKPDSG-QVYLNGQETPPINSKKASKFRREKLGYLFQNFALIEN 90 (206)
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCE-EEEECCEECCCCCHHHHHHHHHCCEEEECCCCCCCCC
T ss_conf 97580779869989999879997099999-999759998975-9999999999899889999986588998579876798
Q ss_pred ----------C---CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf ----------6---753489999999963022323478555017889989999999999999729954747998898999
Q gi|254781149|r 178 ----------L---EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 178 ----------l---EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
+ .++..+...|....+..+..+.. .+-+-.+|+-.|..|+.-|-.-+.+-.+.+-|.|.-+++.-
T Consensus 91 ltV~eNi~l~l~~~~~~~~~~~~~~~~~L~~vgl~~~--~~~~p~~LSGGe~QRVAIARAL~~~P~illaDEPT~~LD~~ 168 (206)
T TIGR03608 91 ETVEENLDLALKYSKLSKKEKREKKKEALEKVGLNLK--LKQKIYELSGGEQQRVALARAILKPSELILADEPTGSLDPK 168 (206)
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH--HHCCCHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 9199999999986599999999999999998699056--52992444869999999999982499999963998778999
No 346
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=92.43 E-value=0.42 Score=27.89 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=10.4
Q ss_pred HCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 299547479988989999999999
Q gi|254781149|r 228 DFPLIIDDRPSPGIMEFVHVANGL 251 (266)
Q Consensus 228 ~~pl~IdD~~~~ti~~ira~aR~~ 251 (266)
+.+|+|-|. +.+++..++..
T Consensus 188 ~yd~~if~~----~~~l~~~i~~k 207 (348)
T pfam09848 188 DYDFKVFDD----PEEMRAAIKEK 207 (348)
T ss_pred CCCEEEECC----HHHHHHHHHHH
T ss_conf 986899899----99999999996
No 347
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.41 E-value=0.44 Score=27.77 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=73.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC-CEEEECCCC----CHHHHHHHHHHHHHCCC
Q ss_conf 777776553016836887068741488999999999630-------223-236411675----34899999999630223
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH-GVAFFSLEM----DREKLGARALSNLLYPS 197 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~-~Vl~fSlEM----s~~ql~~R~ls~~t~~~ 197 (266)
..||++.--+++|+.+.|.|.-|.|||++.--++--..- .++ .+.|..-++ +-.....+++....+..
T Consensus 18 ~vL~~vs~~i~~Gei~~LiGpNGaGKSTLlk~I~Gl~~p~~G~I~~~~~~~igyvpq~~~~~~~~~~~~~~~~~~~~~~~ 97 (251)
T PRK09544 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTK 97 (251)
T ss_pred EEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEECCCHHHHCCCCCHHHHHHHHHCCCCCC
T ss_conf 99963078987997999998999889999999966888986089999940262043776218762189999863276653
Q ss_pred C-------CCCCHHHC---CCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHHHHHH
Q ss_conf 2-------34785550---178899899999999999997299547479988989-----9999999999994
Q gi|254781149|r 198 S-------SRIPYLNL---IRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGLRNKH 255 (266)
Q Consensus 198 ~-------s~I~~~~l---~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~k~k~ 255 (266)
. .++....+ .-+.|+..+..++.=|..-+.+-++.|-|.|.-.++ ++....+++++++
T Consensus 98 ~~~i~~~l~~~~~~~~~~~~~~~LSGGq~QRv~iAraL~~~P~lLiLDEPTsgLD~~~~~~i~~li~~L~~e~ 170 (251)
T PRK09544 98 KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRREL 170 (251)
T ss_pred HHHHHHHHHHHCCCHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 8999999987385224326544589999999999999974999899809864689999999999999999832
No 348
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=92.40 E-value=0.069 Score=33.38 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=78.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH--C------C-----------------CCEEE---
Q ss_conf 851113777776553016836887068741488999999999630--2------2-----------------32364---
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM--S------G-----------------HGVAF--- 175 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~--~------g-----------------~~Vl~--- 175 (266)
-.++|...|+++.=-+.||||+.+-|+.|-|||+| |.+.+.+.. + | .+|.|
T Consensus 10 ~Y~~~~~aL~~v~l~i~kG~F~FLtG~SGAGKttL-LKLl~~~~~P~~G~v~~~G~~~~~l~~~~~P~LRR~iGvvFQDf 88 (215)
T TIGR02673 10 SYPGGVEALHDVSLHIRKGEFLFLTGPSGAGKTTL-LKLLYGALTPSRGQVRVAGEDVSRLRGRQLPLLRRRIGVVFQDF 88 (215)
T ss_pred ECCCCCHHHCCCCEEECCCCEEEEECCCCCCHHHH-HHHHHHHCCCCCCEEEECCEECCCCCCCCCHHHHCCCCEEEECC
T ss_conf 07898511327644752774078872778617899-99998526987580888874046677564312213154378422
Q ss_pred -------------ECCCCC---HHHHHHHHHHHHHCCCCCCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf -------------116753---489999999963022323478555017--88998999999999999972995474799
Q gi|254781149|r 176 -------------FSLEMD---REKLGARALSNLLYPSSSRIPYLNLIR--GEINQEQYRISQGICEKLQDFPLIIDDRP 237 (266)
Q Consensus 176 -------------fSlEMs---~~ql~~R~ls~~t~~~~s~I~~~~l~~--g~l~~~e~~~i~~a~~~l~~~pl~IdD~~ 237 (266)
|+||-. +.++-.|.-..+-.+..+ +++.. ..||-.|..|+.-|=.-+.+-++-+=|.|
T Consensus 89 ~LL~~rTv~eNVAl~L~V~G~~~~~I~~rV~~~L~~vGL~----~K~~~~P~~LSGGEQQRvaIARAiv~~P~lLLADEP 164 (215)
T TIGR02673 89 RLLPDRTVYENVALPLEVRGKKKREIQRRVEAALRLVGLE----HKADAFPEQLSGGEQQRVAIARAIVNSPELLLADEP 164 (215)
T ss_pred CCCCCCCHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCH----HHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 1101166134112101113888033678999999852863----254257210047257888887653048967987788
Q ss_pred CCCHHHH
Q ss_conf 8898999
Q gi|254781149|r 238 SPGIMEF 244 (266)
Q Consensus 238 ~~ti~~i 244 (266)
.=|++.=
T Consensus 165 TGNLD~~ 171 (215)
T TIGR02673 165 TGNLDPA 171 (215)
T ss_pred CCCCCHH
T ss_conf 9996876
No 349
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=92.38 E-value=1 Score=25.27 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=14.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 77776553016836887068741488999999
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALST 162 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alni 162 (266)
.||++.--+.+|+.+.|.|.-|.|||+++--+
T Consensus 19 aL~~vsl~i~~Gei~~liG~nGaGKSTL~~~l 50 (501)
T PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTLMKVL 50 (501)
T ss_pred EECCEEEEECCCCEEEEECCCCCHHHHHHHHH
T ss_conf 88554789989969999899998299999999
No 350
>KOG0054 consensus
Probab=92.33 E-value=0.8 Score=25.95 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=11.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 16836887068741488999999
Q gi|254781149|r 140 QLRELILIGARPSMGKTTFALST 162 (266)
Q Consensus 140 ~~g~LiviaaRP~mGKTa~alni 162 (266)
+||+=|=|-||+|.|||++++-+
T Consensus 1164 ~p~eKVGIVGRTGaGKSSL~~aL 1186 (1381)
T KOG0054 1164 KPGEKVGIVGRTGAGKSSLILAL 1186 (1381)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 49976888689899889999999
No 351
>KOG2825 consensus
Probab=92.32 E-value=0.1 Score=32.18 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=10.5
Q ss_pred EECC-CCCHHHHHHHHHHHH
Q ss_conf 4116-753489999999963
Q gi|254781149|r 175 FFSL-EMDREKLGARALSNL 193 (266)
Q Consensus 175 ~fSl-EMs~~ql~~R~ls~~ 193 (266)
+|-+ |+..+++..++-...
T Consensus 190 m~g~~~~~~~~l~~kle~~~ 209 (323)
T KOG2825 190 MFGMEDAGADDLAGKLEELL 209 (323)
T ss_pred HHCCCCCCHHHHHHHHHHHH
T ss_conf 52545577778999999999
No 352
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.32 E-value=1 Score=25.22 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=65.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH--HHHHHHHCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 68368870687414889999999996302232364116753489999--9999630223234785550178899899999
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGA--RALSNLLYPSSSRIPYLNLIRGEINQEQYRI 218 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~--R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~ 218 (266)
|-..|.++|=-|.|||+.+--+|....++|+.|++.+..-=+-.-.+ |.++.- -+||....- ..-+. .+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q-----~~v~~f~~~-~~~~P--v~I 170 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ-----VGVPFFGSG-TEKDP--VEI 170 (451)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH-----CCCCEECCC-CCCCH--HHH
T ss_conf 9858999815679748689999999997499458985056786899999999986-----098531677-88997--999
Q ss_pred HHHHHHHHHHC--CCEEECCCCC-CHH-HHHHHHHHHH
Q ss_conf 99999999729--9547479988-989-9999999999
Q gi|254781149|r 219 SQGICEKLQDF--PLIIDDRPSP-GIM-EFVHVANGLR 252 (266)
Q Consensus 219 i~~a~~~l~~~--pl~IdD~~~~-ti~-~ira~aR~~k 252 (266)
...++...... .+.|-||++- .++ ++-...+.+|
T Consensus 171 ak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik 208 (451)
T COG0541 171 AKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIK 208 (451)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99999999974998899968873303099999999998
No 353
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=92.30 E-value=1 Score=25.20 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=69.5
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCCC---------------CEEE-----ECCCCCHHH----
Q ss_conf 77777655301683688706874148899999999963-0223---------------2364-----116753489----
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSGH---------------GVAF-----FSLEMDREK---- 184 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g~---------------~Vl~-----fSlEMs~~q---- 184 (266)
..||++.--+.+|+++.|-|+-|.|||++.--++--.- .+|. ..+| |. -|+-.+
T Consensus 26 ~~L~dIs~~I~~GEiv~LiG~nGaGKSTLlr~i~Gl~~p~~G~I~~~~~~i~~~~~~i~~vfQ~~~l~~-~~tV~eni~~ 104 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPTAGDLLAGTAPLAEAQEDTRLMFQDARLLP-WKKVIDNVGL 104 (257)
T ss_pred EEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHHHCEEEEECCCCCCC-CCCHHHHHHH
T ss_conf 898240758879989999989988899999999658988887089898755443110079932564476-7789999863
Q ss_pred -----HHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHHHHH
Q ss_conf -----9999999630223234785550178899899999999999997299547479988989-----999999999999
Q gi|254781149|r 185 -----LGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGLRNK 254 (266)
Q Consensus 185 -----l~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~k~k 254 (266)
.-.|....+-.+..... .+-.-+.|+..+.+++.-|..-+.+-++.|-|.|.-.++ ++..-.+++.++
T Consensus 105 gl~~~~~~~~~e~l~~vgL~~~--~~~~p~~LSGGqkQRvaiAraL~~~P~lLlLDEPtsgLD~~~~~~i~~ll~~L~~e 182 (257)
T PRK11247 105 GLKGQWRDAALQALAAVGLADR--ANEWPAALSGGQKQRVALARALIHRPRLLLLDEPLGALDALTRIEMQDLIESLWQQ 182 (257)
T ss_pred HCCCCHHHHHHHHHHHCCCCHH--HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 2141069999999998599135--53694448999999999999984599999980987657999999999999999996
Q ss_pred H
Q ss_conf 4
Q gi|254781149|r 255 H 255 (266)
Q Consensus 255 ~ 255 (266)
+
T Consensus 183 ~ 183 (257)
T PRK11247 183 H 183 (257)
T ss_pred H
T ss_conf 0
No 354
>KOG0733 consensus
Probab=92.24 E-value=0.46 Score=27.65 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=23.0
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 30168368870687414889999999996
Q gi|254781149|r 138 GVQLRELILIGARPSMGKTTFALSTALHM 166 (266)
Q Consensus 138 G~~~g~LiviaaRP~mGKTa~alnia~~~ 166 (266)
|++|--=+++-|.||+|||.||-.+|...
T Consensus 219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733 219 GVRPPRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 87799751644899864789999975212
No 355
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=92.21 E-value=0.25 Score=29.47 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=21.8
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 8706874148899999999963022323641167
Q gi|254781149|r 146 LIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179 (266)
Q Consensus 146 viaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlE 179 (266)
+....-|.|||+.++++|...+.+|++|+++...
T Consensus 6 ~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~D 39 (231)
T PRK13849 6 FCSFKGGAGKTTALMGLCAALASDGKRVALFEAD 39 (231)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9618998769999999999999789959999689
No 356
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=92.19 E-value=1 Score=25.24 Aligned_cols=127 Identities=11% Similarity=0.103 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCC-----------CEE-EEC------CCCCH
Q ss_conf 1377777655301683688706874148899999999963-0------223-----------236-411------67534
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGH-----------GVA-FFS------LEMDR 182 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~-----------~Vl-~fS------lEMs~ 182 (266)
+...||++.--..+|+.+-+-|.-|.|||++.--++--.- . .|+ .+. +|. .+|+.
T Consensus 33 ~~~al~~vsf~i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~~G~I~v~G~~~~~~~~~~~~~ig~v~~q~~~l~~~ltv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHHHHEEEEECCCCCCCCCCCH
T ss_conf 98986680578848959999999983099999999649488715999999985104098884379995775424679939
Q ss_pred HHHHHHHHHHHHCCCCC-----------CCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----H
Q ss_conf 89999999963022323-----------47855501---78899899999999999997299547479988989-----9
Q gi|254781149|r 183 EKLGARALSNLLYPSSS-----------RIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----E 243 (266)
Q Consensus 183 ~ql~~R~ls~~t~~~~s-----------~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ 243 (266)
.+.. ++.+.+.++... .+...++. -++|+..+.+++.=|..-+.+-++.|-|.|.-.++ +
T Consensus 113 ~e~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~rqrv~ia~aL~~~P~lllLDEPt~gLD~~~~~~ 191 (236)
T cd03267 113 IDSF-YLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191 (236)
T ss_pred HHHH-HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf 9999-999998573899999999999997486877549345699999999999999967999999979876889999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999994
Q gi|254781149|r 244 FVHVANGLRNKH 255 (266)
Q Consensus 244 ira~aR~~k~k~ 255 (266)
|+...+.+.+++
T Consensus 192 i~~~l~~l~~~~ 203 (236)
T cd03267 192 IRNFLKEYNRER 203 (236)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999738
No 357
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=92.16 E-value=0.12 Score=31.73 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=42.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHC----CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCC-CCHHHHHH
Q ss_conf 68870687414889999999996302----23236411675348999999996302232347855501788-99899999
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMS----GHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGE-INQEQYRI 218 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~----g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~-l~~~e~~~ 218 (266)
=+.+-|.||.|||++|.=||.-+-.+ .-|++ |=|.+ +.+.+|++ ..|+ |=-+|-++
T Consensus 32 H~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L----~kPgD-----laaiLt~L----------~~gDVLFIDEIHR 92 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL----EKPGD-----LAAILTNL----------EEGDVLFIDEIHR 92 (305)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCC----CCHHH-----HHHHHHHC----------CCCCEEECCHHHH
T ss_conf 16631756874678999999983893267406755----47578-----99999705----------6896310125650
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254781149|r 219 SQGICEKL 226 (266)
Q Consensus 219 i~~a~~~l 226 (266)
+..++.++
T Consensus 93 L~p~~EE~ 100 (305)
T TIGR00635 93 LSPAIEEL 100 (305)
T ss_pred CCHHHHHH
T ss_conf 48334531
No 358
>KOG0057 consensus
Probab=92.15 E-value=0.63 Score=26.66 Aligned_cols=106 Identities=17% Similarity=0.118 Sum_probs=68.4
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC------------------------------------CCEEEECCCCCH
Q ss_conf 01683688706874148899999999963022------------------------------------323641167534
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMAMSG------------------------------------HGVAFFSLEMDR 182 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a~~g------------------------------------~~Vl~fSlEMs~ 182 (266)
..+|+=+-|.|+||.|||++.--+-.-.--+| +++.|=++-++.
T Consensus 375 I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~ 454 (591)
T KOG0057 375 IPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASD 454 (591)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCEEHHHHCHHHHHHHEEEECCCCCCCCHHHHHHHHCCCCCCCH
T ss_conf 64897898978999878899999999744688599987337650757765221676776643006599886328987688
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHC----CCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf 899999999630223234785550----178-89989999999999999729954747998898999
Q gi|254781149|r 183 EKLGARALSNLLYPSSSRIPYLNL----IRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 183 ~ql~~R~ls~~t~~~~s~I~~~~l----~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
+++..+.=-.-.....++.|-... .+| .|+-.|.+++.-+-.-+++.||++.|.|.-.++-.
T Consensus 455 eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~ 521 (591)
T KOG0057 455 EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSE 521 (591)
T ss_pred HHHHHHHHHCCCHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 9999999972837888736663032675344425640678999999984589868863765323656
No 359
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.15 E-value=0.11 Score=31.87 Aligned_cols=43 Identities=23% Similarity=0.201 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 85111377777655301683688706874148899999999963
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a 167 (266)
-+.||++.+|-++- +.+|+=+.|=|-+|.|||++...++.+..
T Consensus 52 ~l~TGI~~ID~l~p-igrGQR~~Ifg~~g~GKt~Ll~~i~~~~~ 94 (326)
T cd01136 52 VLPTGVRAIDGLLT-VGKGQRLGIFAGSGVGKSTLLGMIARGTT 94 (326)
T ss_pred CCCCCCCHHCCCCC-CCCCCEEEEECCCCCCCCHHHHHHHHCCC
T ss_conf 51157704200266-24798787436999984667876864146
No 360
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=92.15 E-value=0.47 Score=27.55 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=8.2
Q ss_pred EEEECCCCCHHHHHHHHHHHH
Q ss_conf 364116753489999999963
Q gi|254781149|r 173 VAFFSLEMDREKLGARALSNL 193 (266)
Q Consensus 173 Vl~fSlEMs~~ql~~R~ls~~ 193 (266)
+.+.-..=+-..-..|+++.+
T Consensus 292 ~gl~G~nGsGKsTL~~~l~Gl 312 (510)
T PRK09700 292 LGFAGLVGSGRTELMNCLFGV 312 (510)
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999768886288999998198
No 361
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=92.14 E-value=0.84 Score=25.80 Aligned_cols=122 Identities=13% Similarity=0.154 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CC------C------------CEEEECC------CCCH
Q ss_conf 13777776553016836887068741488999999999630-22------3------------2364116------7534
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SG------H------------GVAFFSL------EMDR 182 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g------~------------~Vl~fSl------EMs~ 182 (266)
+.+.||++---+.+|+++.|-|.-|.|||++.-.++--..- +| + .+.|..- .|+.
T Consensus 19 ~~~~l~~isl~I~~Ge~~~iiGpNGaGKSTLlk~i~Gll~p~~G~I~l~g~~i~~~~~~~~~~~ig~v~Q~~~~~~~~tv 98 (265)
T PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITV 98 (265)
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHEEEEECCCCCCCCCCH
T ss_conf 99998402889859979999999883999999999749888852999999995748978987655576013568877678
Q ss_pred HHHHHH-------------------HHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 899999-------------------9996302232347855501---788998999999999999972995474799889
Q gi|254781149|r 183 EKLGAR-------------------ALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPG 240 (266)
Q Consensus 183 ~ql~~R-------------------~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~t 240 (266)
.++... +...+ ..+...++. -+.|+..|..++.=|..-+.+-++.+-|.|.-.
T Consensus 99 ~e~v~~g~~~~~~~~~~~~~~~~~~v~~~l-----~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~P~illLDEPts~ 173 (265)
T PRK10253 99 QELVARGRYPHQPLFTRWRKEDEEAVTKAM-----QATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTW 173 (265)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHH-----HHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 998862234035300135388999999999-----883998786488101998899999999998569998998188766
Q ss_pred HH-----HHHHHHHHHHHH
Q ss_conf 89-----999999999999
Q gi|254781149|r 241 IM-----EFVHVANGLRNK 254 (266)
Q Consensus 241 i~-----~ira~aR~~k~k 254 (266)
++ ++....+++.++
T Consensus 174 LD~~~~~~i~~~i~~l~~~ 192 (265)
T PRK10253 174 LDISHQIDLLELLSELNRE 192 (265)
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999985
No 362
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=92.12 E-value=0.34 Score=28.59 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=23.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 68870687414889999999996302232364116753
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMD 181 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs 181 (266)
.|-|-|.||.|||+|.-.++.....+|+.|.+....=|
T Consensus 51 ~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPs 88 (325)
T PRK09435 51 RIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 88 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 99742799986889999999999967985899997899
No 363
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=92.11 E-value=0.24 Score=29.64 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=6.6
Q ss_pred HCCCCEEEEECCCCH
Q ss_conf 016836887068741
Q gi|254781149|r 139 VQLRELILIGARPSM 153 (266)
Q Consensus 139 ~~~g~LiviaaRP~m 153 (266)
+.-.||++|--+||-
T Consensus 103 I~~ADlVLIP~qpSp 117 (231)
T pfam07015 103 IASSDLLLIPTMLTP 117 (231)
T ss_pred HHHCCEEEECCCCCH
T ss_conf 997898997789982
No 364
>KOG1942 consensus
Probab=92.08 E-value=0.16 Score=30.86 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=33.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC------EEEECCCCCHHHHHHHHHH
Q ss_conf 68368870687414889999999996302232------3641167534899999999
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMSGHG------VAFFSLEMDREKLGARALS 191 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~g~~------Vl~fSlEMs~~ql~~R~ls 191 (266)
.|.-+.+||.||.||||+|+.|+....- +.| .-+||-|.-+.++.++-+-
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~-kvPFcpmvgSEvyS~EvKKTEvLmenfR 118 (456)
T KOG1942 63 AGRAVLLAGPPGTGKTALALAISQELGP-KVPFCPMVGSEVYSNEVKKTEVLMENFR 118 (456)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 6727997369987656899999997479-9985666410555434557899999999
No 365
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.04 E-value=0.24 Score=29.60 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=23.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf 68870687414889999999996302232364116753489
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREK 184 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~q 184 (266)
||+|+|.+|.|||++.-.+....... .+.-++++|-|-|-
T Consensus 3 liLitG~TGSGKTTtl~all~~i~~~-~~~~IiTiEDPiE~ 42 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN-KTHHILTIEDPIEF 42 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-CCCEEEEECCCHHH
T ss_conf 89998999997999999999853637-88369996473775
No 366
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=92.03 E-value=0.16 Score=30.88 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=23.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 68870687414889999999996302232
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHG 172 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~ 172 (266)
+|-|+|-+|.|||+||-.++......|.+
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~ 29 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGREGVP 29 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 98998998571999999999996605877
No 367
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.99 E-value=0.9 Score=25.58 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=72.8
Q ss_pred CCCCHHH----HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C------CC---------------------
Q ss_conf 8511137----77776553016836887068741488999999999630-2------23---------------------
Q gi|254781149|r 124 DIKWGLQ----SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-S------GH--------------------- 171 (266)
Q Consensus 124 Gi~TG~~----~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~------g~--------------------- 171 (266)
.+..+|+ .|+++.-.+.||+.+-|.|++|.|||+++.-+..-.-. + |.
T Consensus 333 ~v~f~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~i~~V~Qd~ 412 (567)
T COG1132 333 NVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP 412 (567)
T ss_pred EEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCC
T ss_conf 87897599876110522775489878885588885789999998615888836989999777538567887823546642
Q ss_pred ---------CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCH-HHC---CCC-CCCHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf ---------23641167534899999999630223234785-550---178-8998999999999999972995474799
Q gi|254781149|r 172 ---------GVAFFSLEMDREKLGARALSNLLYPSSSRIPY-LNL---IRG-EINQEQYRISQGICEKLQDFPLIIDDRP 237 (266)
Q Consensus 172 ---------~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~-~~l---~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~ 237 (266)
++.+.--+.+.+++..-+-.....--..+.|. .+- .+| .|+..|+.++.=|-.-+.+.|+.|-|.|
T Consensus 413 ~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQriaiARall~~~~iLILDEa 492 (567)
T COG1132 413 LLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEA 492 (567)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCH
T ss_conf 77776699997457889999999999999486378984766678360578871889999999999997036986887231
Q ss_pred CCCHHH
Q ss_conf 889899
Q gi|254781149|r 238 SPGIME 243 (266)
Q Consensus 238 ~~ti~~ 243 (266)
.-+++-
T Consensus 493 TS~lD~ 498 (567)
T COG1132 493 TSALDT 498 (567)
T ss_pred HHCCCH
T ss_conf 102677
No 368
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.98 E-value=0.2 Score=30.16 Aligned_cols=100 Identities=21% Similarity=0.194 Sum_probs=56.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH-----HHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 8870687414889999999996302232364116753489-----99999996302232347855501788998999999
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREK-----LGARALSNLLYPSSSRIPYLNLIRGEINQEQYRIS 219 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~q-----l~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i 219 (266)
+=|.|.||.|||+|.-.++.+...+|+.|.+....=+... +.+|+--.... ...++-...+-++.....--...
T Consensus 2 iGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~-~~~~vfiRs~atrg~~ggla~~~ 80 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHA-SDPGVFIRSLATRGFLGGLSRAT 80 (148)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHC-CCCCEEEEECCCCCCCCCHHHHH
T ss_conf 76258997878999999999999789837999968887866862032354534415-79983686346666542046889
Q ss_pred HHHHHHHH--HCCCEEECCCCCCHHHHH
Q ss_conf 99999997--299547479988989999
Q gi|254781149|r 220 QGICEKLQ--DFPLIIDDRPSPGIMEFV 245 (266)
Q Consensus 220 ~~a~~~l~--~~pl~IdD~~~~ti~~ir 245 (266)
.+++.-+. .+.+-|-.|.+....+..
T Consensus 81 ~~~i~~l~~~g~D~IiIETvGvGQse~~ 108 (148)
T cd03114 81 PEVIRVLDAAGFDVIIVETVGVGQSEVD 108 (148)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 9999999975999899974877756026
No 369
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=91.95 E-value=0.22 Score=29.81 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEE--CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 8511137777765530168368870--6874148899999999963022323641167534899999999630
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIG--ARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLL 194 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~Livia--aRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t 194 (266)
|+.+.+.-|+++ +-+..-|++++= |-.-+|--+..++ - ...-.++-|-||+.-.-++|++..+.
T Consensus 99 gi~~~~~lL~~l-~~~~~~D~Vl~DvlgdVvcgGFa~pi~----~--Ad~~~iVTs~e~~sl~aAn~I~~~i~ 164 (267)
T cd02032 99 VVGETVKLLKEL-NLFEEYDVILFDVLGDVVCGGFAAPLN----Y--ADYALIVTDNDFDSIFAANRIAAAVR 164 (267)
T ss_pred CHHHHHHHHHHC-CCCCCCCEEEEECCCCCCCCCCCCCCC----C--CCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 048999999871-664347789995366544566567610----0--68899995671878999999999999
No 370
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=91.95 E-value=0.18 Score=30.54 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=46.3
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC------CEEEECCCCCHHHHHHHHH
Q ss_conf 3036667851113777776553016836887068741488999999999630223------2364116753489999999
Q gi|254781149|r 117 KKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGH------GVAFFSLEMDREKLGARAL 190 (266)
Q Consensus 117 ~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~------~Vl~fSlEMs~~ql~~R~l 190 (266)
+...++.|=.-|+..|=..++|-.|.++| |=|.||+||||-|- +++.-|++.. .-.|.=+.=|.--==+|-+
T Consensus 62 ~SF~EIiGQe~GI~ALKAALCGPNPQHVI-iYGPPGVGKTAAAR-LVLeeAKk~~~SPFke~A~FVEiDATT~RFDERGI 139 (532)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVI-IYGPPGVGKTAAAR-LVLEEAKKNPASPFKEEAAFVEIDATTARFDERGI 139 (532)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEE-EECCCCCCHHHHHH-HHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 76332567355689999860686896389-87886961789999-99998650875378988668985051036021466
No 371
>PRK07594 type III secretion system ATPase; Validated
Probab=91.94 E-value=0.17 Score=30.67 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8511137777765530168368870687414889999999996
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM 166 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~ 166 (266)
-+.||++.+|-++- +.+|+=+-|=|-+|+|||++...|+.+.
T Consensus 138 pl~TGIkaID~l~p-igrGQR~gIfgg~GvGKTtLl~~i~~~~ 179 (433)
T PRK07594 138 PLMTGIRAIDSVAT-CGEGQRVGIFSAPGVGKSTLLAMLCNAP 179 (433)
T ss_pred CCCCCCEEHHCCCC-CCCCCEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 14367400013577-1247874204789998558999998424
No 372
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=91.92 E-value=1.1 Score=24.90 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=61.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEEC---------------------------CCCC
Q ss_conf 777776553016836887068741488999999999630-223236411---------------------------6753
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGHGVAFFS---------------------------LEMD 181 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~~Vl~fS---------------------------lEMs 181 (266)
+.|+++---+.+|+.+.|.|+-|.|||++.-.++--.-. +| .|.|.. ..|+
T Consensus 15 ~~L~dvs~~i~~Ge~~~liG~nGsGKSTll~~i~Gl~~~~~G-~i~~~G~~i~~~~~~~~~~r~~ig~v~Q~~~l~~~lt 93 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG-DLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT 93 (240)
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHHHHCEEECCCCCCCCCCC
T ss_conf 888130789879989999999998099999999638999997-4878999878876658998752428801122478877
Q ss_pred H-HHHH---------------HHHHHHHHCCCCCCCCHH-HCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 4-8999---------------999996302232347855-50178899899999999999997299547479988989
Q gi|254781149|r 182 R-EKLG---------------ARALSNLLYPSSSRIPYL-NLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 182 ~-~ql~---------------~R~ls~~t~~~~s~I~~~-~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
. +.+. .|....+.. -++... +-+-..|+..+..++.-|..-+.+-.+.|-|.|.-.++
T Consensus 94 v~eni~~~~~~~~~~~~~~~~~~~~~~l~~---~gl~~~~~~~~~~LSGGq~QRvaiAraL~~~P~lLllDEPt~~LD 168 (240)
T PRK09493 94 ALENVMFGPLRVRGASKEEAEKQARELLAK---VGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168 (240)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 999998789997599878999999999997---699246629877289999999999987735999999908876689
No 373
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=91.91 E-value=0.67 Score=26.51 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=62.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 88706874148899999999963022323641167534899999999630223234785550178899899999999999
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICE 224 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~ 224 (266)
+=+-+.||.|||++......... ...++.++--.+-.+.=+.|+-+ .++|.-++.+|..-.-|-..+..|..
T Consensus 107 lNl~sSPGSGKTtLLe~ti~~L~-~~~~~aVIeGD~~T~~DA~RI~~-------~Gv~avQInTG~~CHLDA~MV~~al~ 178 (290)
T PRK10463 107 LNLVSSPGSGKTTLLTETLMRLK-DSVPCAVIEGDQQTVNDAARIRA-------TGTPAIQVNTGKGCHLDAQMIADAAP 178 (290)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH-CCCCEEEEEECCCCHHHHHHHHH-------CCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf 99306998788999999999873-36757999604235667999997-------69958995479976759999999998
Q ss_pred HHHHCC---CEEECCCCC
Q ss_conf 997299---547479988
Q gi|254781149|r 225 KLQDFP---LIIDDRPSP 239 (266)
Q Consensus 225 ~l~~~p---l~IdD~~~~ 239 (266)
++.--+ |||+--+++
T Consensus 179 ~l~l~~~dllfIENVGNL 196 (290)
T PRK10463 179 RLPLDDNGILFIENVGNL 196 (290)
T ss_pred HCCCCCCCEEEEECCCCC
T ss_conf 489877989998127884
No 374
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=91.90 E-value=0.49 Score=27.41 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=66.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CC--------------------CCE---------
Q ss_conf 77777655301683688706874148899999999963-0------22--------------------323---------
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SG--------------------HGV--------- 173 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g--------------------~~V--------- 173 (266)
+.|+++.--+.||+.+.|-|+.|.|||+++--++.-.- . .| .|.
T Consensus 17 ~vL~~isl~i~~G~~iaIvG~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eN 96 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAEN 96 (238)
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCEECCCCHHHH
T ss_conf 52225589976999999999999989999999823861885189999999231899999740699915896727529999
Q ss_pred -EEECCCCCHHHHHHHHHHHHHCCCC--CCCCHH---HC-CCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf -6411675348999999996302232--347855---50-178-89989999999999999729954747998898999
Q gi|254781149|r 174 -AFFSLEMDREKLGARALSNLLYPSS--SRIPYL---NL-IRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 174 -l~fSlEMs~~ql~~R~ls~~t~~~~--s~I~~~---~l-~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
.|..-+-+.+++. +.+. ..++.. .+.|.. .+ ..| .|+..++.++.=|-.-+.+.|++|-|.|.-+++..
T Consensus 97 i~~g~~~~~~~~~~-~a~~-~~~l~~~i~~lp~gl~t~ige~G~~LSgGQ~QRialARAl~~~~~ililDE~tsaLD~~ 173 (238)
T cd03249 97 IRYGKPDATDEEVE-EAAK-KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173 (238)
T ss_pred HHCCCCCCCHHHHH-HHHH-HHCCCHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 63368789999999-9999-97852435518687722507867858999999999999996599999997876678999
No 375
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=91.87 E-value=0.18 Score=30.54 Aligned_cols=11 Identities=18% Similarity=0.147 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254781149|r 216 YRISQGICEKL 226 (266)
Q Consensus 216 ~~~i~~a~~~l 226 (266)
..++..++..+
T Consensus 190 ~~~L~~~l~~l 200 (234)
T pfam03029 190 YRYLNEAIRLA 200 (234)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 376
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=91.84 E-value=1.2 Score=24.85 Aligned_cols=113 Identities=14% Similarity=0.102 Sum_probs=65.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CC--------------------------CCEE---------
Q ss_conf 77776553016836887068741488999999999630-22--------------------------3236---------
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SG--------------------------HGVA--------- 174 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g--------------------------~~Vl--------- 174 (266)
-|+++.--+.||+.+.|-|+.|.|||+++--+..-.-- +| .|.+
T Consensus 330 vL~~isl~I~~Ge~vaIVG~SGsGKSTLl~LL~g~y~p~~G~I~idg~di~~i~~~~lR~~I~~V~Q~~~LF~~TI~eNI 409 (569)
T PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNI 409 (569)
T ss_pred HHCCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 23076568889978998799999879999999977642678746501013425768886314765887502566299998
Q ss_pred -EECCCCCHHHHHHHH-HHHHHCCCCCCCC----HHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf -411675348999999-9963022323478----5550178-89989999999999999729954747998898999
Q gi|254781149|r 175 -FFSLEMDREKLGARA-LSNLLYPSSSRIP----YLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 175 -~fSlEMs~~ql~~R~-ls~~t~~~~s~I~----~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
+..-+-+.+++..=+ .|++.. ...+.| ..--.+| .|+..|+.|+.=|-.-+++.|+.|-|.|.-+++..
T Consensus 410 ~lg~~~~~~eei~~a~~~a~l~~-~i~~lp~G~dT~ige~G~~LSGGQrQRialARAll~~p~iliLDEaTSaLD~~ 485 (569)
T PRK10789 410 ALGRPDATQQEIEHVARLASVHE-DILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGR 485 (569)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 65797765458999999855568-76437553237126888996999999999999995499989980876668999
No 377
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=91.76 E-value=1.1 Score=24.86 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=64.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C------CCC------------EEEECC------------
Q ss_conf 777776553016836887068741488999999999630-2------232------------364116------------
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-S------GHG------------VAFFSL------------ 178 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~------g~~------------Vl~fSl------------ 178 (266)
+.|+++.--+.+|+.+.|-|+.|.|||+++--++--..- + |++ +.|..-
T Consensus 18 ~vL~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eN 97 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSN 97 (221)
T ss_pred CCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEEECCCCCCCCCHHHH
T ss_conf 51754489986998999999999989999999967971898489999999661999999740799930352356008875
Q ss_pred -----CCCHHHHHHHHHHHHH--C-C--CCCCCCHHHCCC-CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf -----7534899999999630--2-2--323478555017-889989999999999999729954747998898999
Q gi|254781149|r 179 -----EMDREKLGARALSNLL--Y-P--SSSRIPYLNLIR-GEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 179 -----EMs~~ql~~R~ls~~t--~-~--~~s~I~~~~l~~-g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
+.+.+++.. .+.... . + ...+++..--.. ..|+..+..++.=|-.-+.+.++.|-|.|.-.++..
T Consensus 98 i~~~~~~~~~~i~~-~l~~~~l~~~~~~~~~~l~~~~~~~~~~LSgGqkQrv~lARal~~~p~ililDEpts~LD~~ 173 (221)
T cd03244 98 LDPFGEYSDEELWQ-ALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPE 173 (221)
T ss_pred HCCCCCCCHHHHHH-HHHHHCHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 07102379999999-88751608999741044454703666779999999999999996599999997975679999
No 378
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.73 E-value=0.25 Score=29.45 Aligned_cols=39 Identities=28% Similarity=0.227 Sum_probs=31.0
Q ss_pred HCCCCE-EEEECCCCHHHHHHHHHHHHHHHHC-----CCCEEEEC
Q ss_conf 016836-8870687414889999999996302-----23236411
Q gi|254781149|r 139 VQLREL-ILIGARPSMGKTTFALSTALHMAMS-----GHGVAFFS 177 (266)
Q Consensus 139 ~~~g~L-iviaaRP~mGKTa~alnia~~~a~~-----g~~Vl~fS 177 (266)
.+.|.| +++-|||++|||++.-.+|...+.. ++.|.+..
T Consensus 133 y~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiD 177 (308)
T COG3854 133 YQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIID 177 (308)
T ss_pred HHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 843722469965998870779999999863151126773289971
No 379
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=91.71 E-value=0.17 Score=30.68 Aligned_cols=58 Identities=17% Similarity=0.068 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCH
Q ss_conf 785111377777655301683688706874148899999999963022323641167534
Q gi|254781149|r 123 PDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDR 182 (266)
Q Consensus 123 ~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~ 182 (266)
.-++||++.+|-++. +.+|+=+-|-|-+|+|||++...+|.+... ...|...--|-.+
T Consensus 157 epL~TGIraID~llp-igrGQRigIfagsGvGKs~Ll~~iar~~~a-dv~Vi~lIGERgr 214 (455)
T PRK07960 157 HVLDTGVRAINALLT-VGRGQRMGLFAGSGVGKSVLLGMMARYTRA-DVIVVGLIGERGR 214 (455)
T ss_pred CCCCCCCEEEECCCC-CCCCCEEECCCCCCCCHHHHHHHHHHHHCC-CEEEEEEECEEHH
T ss_conf 723268444403367-147877632489988499999999886089-8589972040628
No 380
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.68 E-value=1.2 Score=24.73 Aligned_cols=88 Identities=14% Similarity=0.260 Sum_probs=58.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHC----CCCEEEECCCCCH----HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCH
Q ss_conf 8368870687414889999999996302----2323641167534----8999999996302232347855501788998
Q gi|254781149|r 142 RELILIGARPSMGKTTFALSTALHMAMS----GHGVAFFSLEMDR----EKLGARALSNLLYPSSSRIPYLNLIRGEINQ 213 (266)
Q Consensus 142 g~LiviaaRP~mGKTa~alnia~~~a~~----g~~Vl~fSlEMs~----~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~ 213 (266)
+..+.+.|.+|+|||+..--+|.....+ +..|.+++..-=+ +|| |..|.+ -+||..-.. +.
T Consensus 174 ~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQL--ktya~i-----l~vp~~v~~----~~ 242 (388)
T PRK12723 174 KRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI--QTYGDI-----MGIPVKAIE----SF 242 (388)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH--HHHHHH-----HCCCEEEEC----CH
T ss_conf 6289998998875787999999999986267677379998078758899999--999999-----788069857----88
Q ss_pred HHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 999999999999972995474799889899
Q gi|254781149|r 214 EQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 214 ~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
+++ ..++.++.+..+-+-||++.+-.+
T Consensus 243 ~dl---~~~l~~~~~~D~IlIDTAGrs~~d 269 (388)
T PRK12723 243 KDL---KEEITQSKDFDLVLIDTIGKSPKD 269 (388)
T ss_pred HHH---HHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 999---999997249999999589988568
No 381
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=91.65 E-value=0.48 Score=27.52 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=8.1
Q ss_pred CEEEECCCCCHHHHHHHHH
Q ss_conf 2364116753489999999
Q gi|254781149|r 172 GVAFFSLEMDREKLGARAL 190 (266)
Q Consensus 172 ~Vl~fSlEMs~~ql~~R~l 190 (266)
|-+++=|--|.+.+..|+-
T Consensus 143 PdlvIYL~a~pe~~~~RI~ 161 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIK 161 (219)
T ss_pred CCEEEEEECCHHHHHHHHH
T ss_conf 9989998399999999999
No 382
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=91.65 E-value=0.18 Score=30.50 Aligned_cols=58 Identities=24% Similarity=0.237 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHH
Q ss_conf 851113777776553016836887068741488999999999630223236411675348
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDRE 183 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ 183 (266)
-+.||++.+|-++. +.+|+=+-|-|-+|+|||+++-.|+.+... ...|...--|-..+
T Consensus 139 ~l~TGIraID~l~t-igkGQRigIf~gsGvGKs~Ll~~iar~~~a-dv~V~~liGeR~rE 196 (435)
T PRK07721 139 KMEVGVRAIDSLLT-VGKGQRVGIFAGSGVGKSTLMGMIARQTSA-DLNVIALIGERGRE 196 (435)
T ss_pred CCCCCCEEECCCCC-CCCCCEEEECCCCCCCHHHHHHHHHHHHCC-CEEEEEEECCCHHH
T ss_conf 30378565226476-035754100268998789999999887448-82589993320289
No 383
>pfam07088 GvpD GvpD gas vesicle protein. This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation.
Probab=91.64 E-value=0.073 Score=33.19 Aligned_cols=61 Identities=15% Similarity=0.322 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHH---HHHHHHHHHCCCCEEEE-CCCCCHH
Q ss_conf 78511137777765-53016836887068741488999---99999963022323641-1675348
Q gi|254781149|r 123 PDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFA---LSTALHMAMSGHGVAFF-SLEMDRE 183 (266)
Q Consensus 123 ~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~a---lnia~~~a~~g~~Vl~f-SlEMs~~ 183 (266)
.+.+||+.+||+++ ||+..|..+++-=-+..+|-+.. +--+.|...+|..|++. +-|||.-
T Consensus 238 a~fstgi~dlD~IlsgG~~~GS~v~Ldlg~d~~~~~~~vl~l~ai~Nfl~n~~~v~ivpp~~~sp~ 303 (484)
T pfam07088 238 AEFSTGIGDLDKILSGGTNRGSVVHLDLGKDLSRDAWSVLTLPAIRNFLSNEMGVAVVPPREGSPG 303 (484)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEHHHHHHHHHHCCCCEEEECCCCCCCH
T ss_conf 402568886677610654666379997257877420232112879999855783698565558821
No 384
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.63 E-value=0.51 Score=27.34 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CC-----------------CCEEEE------CCCCCH
Q ss_conf 113777776553016836887068741488999999999630-22-----------------323641------167534
Q gi|254781149|r 127 WGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SG-----------------HGVAFF------SLEMDR 182 (266)
Q Consensus 127 TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g-----------------~~Vl~f------SlEMs~ 182 (266)
.++..||++.--+.+|+.+-+.|.-|.|||++.--++--.-- +| ..+.|+ --.|+.
T Consensus 16 ~~~~al~~vs~~i~~Gei~gllG~NGaGKSTllk~i~Gl~~p~~G~i~i~G~d~~~~~~~~r~~ig~~~q~~~l~~~ltv 95 (218)
T cd03266 16 KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred CCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEECCCCCCCCCCCH
T ss_conf 76898726278985982999999999849999999977977897489999999886979896287998077667999989
Q ss_pred HHHHHHHHHHHHCCC-------------CCCCC-HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 899999999630223-------------23478-5550178899899999999999997299547479988989
Q gi|254781149|r 183 EKLGARALSNLLYPS-------------SSRIP-YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 183 ~ql~~R~ls~~t~~~-------------~s~I~-~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
.|... +.+.+-++. .-++. ..+-+-+.|+..+.+++.=|..-+.+.++.|-|.|...++
T Consensus 96 ~e~l~-~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrv~la~al~~~P~lliLDEPt~gLD 168 (218)
T cd03266 96 RENLE-YFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHH-HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 99999-99998499989999999999997499557514432278268899999999866998999979876769
No 385
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=91.63 E-value=0.15 Score=30.93 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC---------------------------CCCEEEE
Q ss_conf 8511137777765530168368870687414889999999996302---------------------------2323641
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMS---------------------------GHGVAFF 176 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~---------------------------g~~Vl~f 176 (266)
-+.||++.+|-++. +.+|+=+-|=|-+|+|||+++..++.|+... .++|+++
T Consensus 139 ~l~TGIraID~l~p-igrGQR~gIfg~sGvGKstLl~~i~~~~~adv~Vi~lIGeRgrEv~efi~~~l~~~gl~~tvvV~ 217 (432)
T PRK06793 139 VFETGIKSIDSMLT-IGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVV 217 (432)
T ss_pred CCCCCCCHHHHCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 40048731000156-12462666632689878999999987245786579998886279999999986446752127887
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCHHHCC-CCC---CCHHHHHHHHHHHHHHH
Q ss_conf 1675348999999996302232347855501-788---99899999999999997
Q gi|254781149|r 177 SLEMDREKLGARALSNLLYPSSSRIPYLNLI-RGE---INQEQYRISQGICEKLQ 227 (266)
Q Consensus 177 SlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~-~g~---l~~~e~~~i~~a~~~l~ 227 (266)
+. +.+--..|+.+..++...+ ..+| .|+ +-=++..+...|..+++
T Consensus 218 at--sd~p~~~r~~a~~~a~aiA----Eyfrd~G~~VLli~DslTr~A~A~REis 266 (432)
T PRK06793 218 AT--SDESHLMQLRAAKLATSIA----EYFRDQGNNVLLMMDSVTRFADARRSVD 266 (432)
T ss_pred EC--CCCCHHHHHHHHHHHHHHH----HHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 25--8899899998875512378----8998669968999456788888874778
No 386
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.61 E-value=0.34 Score=28.54 Aligned_cols=123 Identities=17% Similarity=0.136 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCCC-------------EEEE------CCCCCH
Q ss_conf 3777776553016836887068741488999999999630-------2232-------------3641------167534
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGHG-------------VAFF------SLEMDR 182 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~~-------------Vl~f------SlEMs~ 182 (266)
.+.|+++.--+.+|+++.|-|+-|.|||++.--+.--.-- .|.+ +.|. -..|+-
T Consensus 13 ~~~L~~vs~~v~~Gei~~liGpNGaGKSTL~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gig~v~Q~~~lf~~lTV 92 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTV 92 (230)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCEEEECCCCCCCCCCCH
T ss_conf 66888717799999799999999940999999997799999549999999999999899998295993777425767889
Q ss_pred HHHH---------------HHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH-----H
Q ss_conf 8999---------------9999963022323478555017889989999999999999729954747998898-----9
Q gi|254781149|r 183 EKLG---------------ARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI-----M 242 (266)
Q Consensus 183 ~ql~---------------~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti-----~ 242 (266)
.|-. .+++...... -+..+-+-+.|+-.+.+++.-|..-+.+-++.+-|.|.-.+ .
T Consensus 93 ~Enl~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~r~~~~LSGGq~Qrv~iAraL~~~P~lLlLDEPt~gLD~~~~~ 168 (230)
T TIGR03410 93 EENLLTGLAALPRRSRKIPDEIYELFPVL----KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIK 168 (230)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHH----HHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 99999999874966788999999999999----99983851119999999999999996299889993852269999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999994
Q gi|254781149|r 243 EFVHVANGLRNKH 255 (266)
Q Consensus 243 ~ira~aR~~k~k~ 255 (266)
+|....+++++++
T Consensus 169 ~i~~~i~~l~~~~ 181 (230)
T TIGR03410 169 DIGRVIRRLRAEG 181 (230)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999999717
No 387
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.61 E-value=1.2 Score=24.68 Aligned_cols=114 Identities=14% Similarity=0.113 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CC---------------CE-EEE---CC----
Q ss_conf 377777655301683688706874148899999999963-02------23---------------23-641---16----
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GH---------------GV-AFF---SL---- 178 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~---------------~V-l~f---Sl---- 178 (266)
+..||++---+.+|+++.|-|..|.|||+++--++.-.. .+ |+ .+ .+| +|
T Consensus 18 ~~al~~vsl~i~~Ge~~~ivG~SGsGKSTllr~i~gL~~p~sG~I~~~g~~i~~~~~~~~~~~Rr~ig~VFQ~~~L~~~~ 97 (233)
T cd03258 18 VTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 99984828899999999998898058999999996799999808999999989799999999862587794377889988
Q ss_pred -------------CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf -------------753489999999963022323478555017889989999999999999729954747998898999
Q gi|254781149|r 179 -------------EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 179 -------------EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
-++.++...|....+.-+..... .+-+-.+|+-.+..|+.-|-.-+.+-.+.|.|.|.-.++-.
T Consensus 98 tv~~nv~~~l~~~~~~~~~~~~r~~~lL~~vgL~~~--~~~yP~eLSGGq~QRVaIARAL~~~P~lllaDEPTs~LD~~ 174 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK--ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174 (233)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH--HHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 399999999997499999999999999986799167--62696526778889999999983399899965976646988
No 388
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=91.56 E-value=1.2 Score=24.64 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=69.7
Q ss_pred HHHHHHH-HHCCCCEEEEECCCCHHHHHHHHHHHHHHH---HC-C---CCEEEECCCC--CHHHHHHHHHHHH-HCCCCC
Q ss_conf 7777655-301683688706874148899999999963---02-2---3236411675--3489999999963-022323
Q gi|254781149|r 131 SVDHLMG-GVQLRELILIGARPSMGKTTFALSTALHMA---MS-G---HGVAFFSLEM--DREKLGARALSNL-LYPSSS 199 (266)
Q Consensus 131 ~LD~~~g-G~~~g~LiviaaRP~mGKTa~alnia~~~a---~~-g---~~Vl~fSlEM--s~~ql~~R~ls~~-t~~~~s 199 (266)
.|-.++. |+.|-++ +|=|.||.|||+.+-.++..+- .+ + -.|.+...+- |.-|++.++.-.+ -+-...
T Consensus 32 ~L~~~l~PG~~P~Ni-~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~~~~~L~~~ln~~~~~~ 110 (383)
T TIGR02928 32 ALRPILRPGSRPSNI-FIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQVLVELANQLNRRGSGE 110 (383)
T ss_pred HHHHHHCCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 988750674898725-8878889878899999999999986226997158999778546846999999999851577888
Q ss_pred CCCHHHCCCCCCCHHHHHHHHHHHH-HHHHCCCEEECC
Q ss_conf 4785550178899899999999999-997299547479
Q gi|254781149|r 200 RIPYLNLIRGEINQEQYRISQGICE-KLQDFPLIIDDR 236 (266)
Q Consensus 200 ~I~~~~l~~g~l~~~e~~~i~~a~~-~l~~~pl~IdD~ 236 (266)
+||.. |-=+++-|+++.+.++ .....=|.|=|.
T Consensus 111 ~vP~t----G~s~~~~~~~l~~~l~~~~~~~~~ivLDE 144 (383)
T TIGR02928 111 EVPTT----GLSTSEVFRELYKELNRERGDSLIIVLDE 144 (383)
T ss_pred CCCCC----CCCHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 89887----78789999999999832018879998623
No 389
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=91.49 E-value=0.16 Score=30.90 Aligned_cols=101 Identities=16% Similarity=0.224 Sum_probs=57.7
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHH-HHHHHHCCCCEEEECCC-------------------------------------
Q ss_conf 3016836887068741488999999-99963022323641167-------------------------------------
Q gi|254781149|r 138 GVQLRELILIGARPSMGKTTFALST-ALHMAMSGHGVAFFSLE------------------------------------- 179 (266)
Q Consensus 138 G~~~g~LiviaaRP~mGKTa~alni-a~~~a~~g~~Vl~fSlE------------------------------------- 179 (266)
-..|||++|+-|..|+||||+..=| ++.-+.+| .+-+|--|
T Consensus 27 ~i~~GEiViltGPSGSGKTTLLtLiG~LR~~Q~G-~L~vlg~~L~ga~~~~l~~~RR~iGyIFQ~HNLl~~LTA~QNVqM 105 (220)
T TIGR02982 27 EINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG-SLKVLGQELKGASKKELVQVRRNIGYIFQAHNLLGFLTARQNVQM 105 (220)
T ss_pred EECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCC-EEEEECCHHCCCCHHHHHHHHHHCCCEECCCHHCHHHHHHHHHHH
T ss_conf 7717647984378898468899988762565556-047822010267888999998763914412000100017788864
Q ss_pred -------CCHHHHHHHHHHHHHCCCCC-CCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf -------53489999999963022323-4785550178899899999999999997299547479988989
Q gi|254781149|r 180 -------MDREKLGARALSNLLYPSSS-RIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 180 -------Ms~~ql~~R~ls~~t~~~~s-~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
++..+...+.-+.+..|... +++++. .+||..+..||.-|=.-..+-+|-.=|.|.-.++
T Consensus 106 ~~eL~~~~~~~~~~~~a~~~L~~VGL~~~~~y~P---~~LSGGQKQRVAIARALv~~P~LvLADEPTAALD 173 (220)
T TIGR02982 106 ALELQPNLSAQEAREKARAMLEAVGLGDRLDYYP---ENLSGGQKQRVAIARALVARPKLVLADEPTAALD 173 (220)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCCCCHHHHHHHHHHHCCCCEEECCCCCHHHH
T ss_conf 8988761168899999999998606012554052---4367861689999999733897676257723322
No 390
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=91.47 E-value=0.31 Score=28.79 Aligned_cols=18 Identities=22% Similarity=0.098 Sum_probs=7.4
Q ss_pred CCHHHHHHHHHHHHHCCC
Q ss_conf 534899999999630223
Q gi|254781149|r 180 MDREKLGARALSNLLYPS 197 (266)
Q Consensus 180 Ms~~ql~~R~ls~~t~~~ 197 (266)
|+..+-..+++...++++
T Consensus 176 ~~~~~~~~~~l~~~~gvP 193 (223)
T PRK00090 176 GLRHAENLATLAELLPAP 193 (223)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 667776899999854998
No 391
>PRK05922 type III secretion system ATPase; Validated
Probab=91.47 E-value=0.13 Score=31.35 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8511137777765530168368870687414889999999996
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM 166 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~ 166 (266)
-++||++.+|-++. +.+|+=+-|=|-+|+|||+++..++.+.
T Consensus 140 ~L~TGIraID~l~p-igrGQR~gIf~g~GvGKt~Ll~~ia~~~ 181 (434)
T PRK05922 140 IFPTGIKAIDAFLT-LGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred CCCCCCEEEECCCC-CCCCCEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 55478556735677-2467677730799997899998676536
No 392
>PRK13544 consensus
Probab=91.44 E-value=0.67 Score=26.47 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=68.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC----------CEEEE------CCCCCHHHHHH
Q ss_conf 77776553016836887068741488999999999630-------223----------23641------16753489999
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH----------GVAFF------SLEMDREKLGA 187 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~----------~Vl~f------SlEMs~~ql~~ 187 (266)
-|+++.--+.+|+.+.|-|+-|.|||++.--++--.-- .|. .+.|+ .-.|+-.+...
T Consensus 16 il~~vs~~i~~Gei~~l~G~NGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~i~~~~q~~~~~~~ltv~e~l~ 95 (208)
T PRK13544 16 LFSNLSFTAKQNSLTLVIGNNGSGKTSLLRLLAGLIPITHGNIKYNGENIHDSDTYITSITYIGHKNACNDNLTVLENIE 95 (208)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHCCEEEECCCCCCCCCCCHHHHHH
T ss_conf 99441589829949999999999899999999588068974899999999878376607278766444576778999999
Q ss_pred HHHHHHHCCC--------CCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 9999630223--------234785-5501788998999999999999972995474799889899
Q gi|254781149|r 188 RALSNLLYPS--------SSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 188 R~ls~~t~~~--------~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
+.+.+.+.. .-.+.. -+.+-++|+..+.+++.=|..-+.+.++++-|.|.-.++.
T Consensus 96 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~kqrv~la~aL~~~~~illLDEPt~gLD~ 159 (208)
T PRK13544 96 -FWANIRNTHELIAAAICFFELQPVLDIKYKELSSGWKRRVALSRLLIYNTNVWIIDEPFANLDS 159 (208)
T ss_pred -HHHHHCCCHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf -9986178389999999984997887271535799999999999998569999999798666899
No 393
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=91.44 E-value=0.77 Score=26.05 Aligned_cols=114 Identities=18% Similarity=0.121 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H--------------------------CCCCEEE------
Q ss_conf 377777655301683688706874148899999999963-0--------------------------2232364------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M--------------------------SGHGVAF------ 175 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~--------------------------~g~~Vl~------ 175 (266)
.+.|+++.--+.+|+.+.|-|+.|.|||+++--+..-.. . ...|.+|
T Consensus 17 ~~~L~~isl~i~~G~~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~e 96 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD 96 (220)
T ss_pred CCCEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCHHHHHHCEEEECCCCEEECCCHHH
T ss_conf 85153459998799999999999985999999996725478658999999957725999973269991689676675999
Q ss_pred ----ECCCCCHHHHHHHHHHHHHCCCCC--CCC----HHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHH
Q ss_conf ----116753489999999963022323--478----5550178-89989999999999999729954747998898999
Q gi|254781149|r 176 ----FSLEMDREKLGARALSNLLYPSSS--RIP----YLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEF 244 (266)
Q Consensus 176 ----fSlEMs~~ql~~R~ls~~t~~~~s--~I~----~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~i 244 (266)
...+-+.+++..- +. ..++... +.| ..--..| .|+..|..++.=|-.-+++.+++|-|.|.-+++..
T Consensus 97 Ni~~~~~~~~~~~i~~~-~~-~~~l~~~i~~~~~g~~t~i~~~g~~LSgGqkQri~lARal~~~~~ililDEpts~LD~~ 174 (220)
T cd03245 97 NITLGAPLADDERILRA-AE-LAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMN 174 (220)
T ss_pred HHHCCCCCCCHHHHHHH-HH-HHCCHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 85357977897999999-99-95978999737554345358999721899999999999995599999996875688989
No 394
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.38 E-value=0.79 Score=26.00 Aligned_cols=111 Identities=22% Similarity=0.217 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CC---------CEEEECCC-------CC-HH
Q ss_conf 1377777655301683688706874148899999999963-02------23---------23641167-------53-48
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GH---------GVAFFSLE-------MD-RE 183 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~---------~Vl~fSlE-------Ms-~~ 183 (266)
|-..|+++---+.+|+.+.|-|.-|.|||++.--++--.- .+ |+ .+.|..-+ ++ .+
T Consensus 12 ~~~vL~~vsl~i~~Gei~~iiG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~~ 91 (205)
T cd03226 12 GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred CCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHCCEEEEEECCCCCCCHHHHHH
T ss_conf 99786403788869989999889999899999999568577787389999999657874448999627864420647999
Q ss_pred H-------------HHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 9-------------99999996302232347855501788998999999999999972995474799889899
Q gi|254781149|r 184 K-------------LGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 184 q-------------l~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
+ -..+++... ..... .+-.-..|+-.+..++.-|..-+.+.++.+-|.|...++-
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~---~l~~~--~~~~~~~LSGGqkQrv~iA~aL~~~P~illLDEPt~gLD~ 159 (205)
T cd03226 92 ELLLGLKELDAGNEQAETVLKDL---DLYAL--KERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHC---CCCHH--HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 99704878560799999999976---99235--5389112899999999999999759999999799765899
No 395
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=91.37 E-value=0.23 Score=29.78 Aligned_cols=19 Identities=37% Similarity=0.373 Sum_probs=11.1
Q ss_pred CEEEECCCCCHHHHHHHHH
Q ss_conf 2364116753489999999
Q gi|254781149|r 172 GVAFFSLEMDREKLGARAL 190 (266)
Q Consensus 172 ~Vl~fSlEMs~~ql~~R~l 190 (266)
....|-|..+++.+..|+-
T Consensus 190 ~~~~i~L~~~r~~L~~rI~ 208 (304)
T PRK00091 190 DVLIIGLDPDREVLYERIN 208 (304)
T ss_pred CEEEEEECCCHHHHHHHHH
T ss_conf 6289996899999999999
No 396
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=91.28 E-value=1.2 Score=24.73 Aligned_cols=105 Identities=21% Similarity=0.080 Sum_probs=65.9
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC-------CCEEEECCC-------CCHHHHHH---------
Q ss_conf 777655301683688706874148899999999963-022-------323641167-------53489999---------
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG-------HGVAFFSLE-------MDREKLGA--------- 187 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g-------~~Vl~fSlE-------Ms~~ql~~--------- 187 (266)
|+++.--+++|+-+-|.|+-|.|||+|+--|+-..- ..| ..+.||+-+ ++..+...
T Consensus 335 l~~vsl~i~~Ge~ialvG~NGsGKSTLlk~l~G~l~p~~G~i~~g~~~~i~y~~Q~~~~l~~~~tv~~~l~~~~~~~~~~ 414 (632)
T PRK11147 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQYRAELDPEKTVMDNLAEGKQEVMVN 414 (632)
T ss_pred EEEECCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEHHHHHHCCCCCCHHHHHHHCCHHCCCC
T ss_conf 76533335788779998898842779999860666899877998998707755154764597686999997323210115
Q ss_pred ---H-HHHHHHCCCCCCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf ---9-99963022323478555017--8899899999999999997299547479988
Q gi|254781149|r 188 ---R-ALSNLLYPSSSRIPYLNLIR--GEINQEQYRISQGICEKLQDFPLIIDDRPSP 239 (266)
Q Consensus 188 ---R-~ls~~t~~~~s~I~~~~l~~--g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ 239 (266)
| +++.+.. -.++...... +.|+-.|..|+.=|.--+.+.++-|-|.|.=
T Consensus 415 ~~~r~~~~~L~~---f~f~~~~~~~~v~~LSGGEk~Rl~LA~~l~~~pnlLiLDEPTN 469 (632)
T PRK11147 415 GKPRHVLGYLQD---FLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTN 469 (632)
T ss_pred HHHHHHHHHHHH---HCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 589999999998---5779889639155399999999999998577997899989876
No 397
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=91.22 E-value=0.71 Score=26.33 Aligned_cols=122 Identities=23% Similarity=0.190 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C------CCC-------------EEE-E-----CCCCC
Q ss_conf 13777776553016836887068741488999999999630-2------232-------------364-1-----16753
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-S------GHG-------------VAF-F-----SLEMD 181 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~------g~~-------------Vl~-f-----SlEMs 181 (266)
++..||++---+++|+++-|.|.-|.|||++.--++--.-- + |++ +.+ | -.+|+
T Consensus 12 ~~~aL~~vsl~i~~Gei~gliG~nGaGKSTL~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~gi~~v~Q~~~l~~~lt 91 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCCEEEECCCCCCCCCC
T ss_conf 99987233899889989999989997399999999679878831899999966889999999759767601410265543
Q ss_pred HHHH-------------------------HHHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 4899-------------------------999999630223234785-55017889989999999999999729954747
Q gi|254781149|r 182 REKL-------------------------GARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDD 235 (266)
Q Consensus 182 ~~ql-------------------------~~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD 235 (266)
-.+- ..|.-..+. .-++.. .+-.-+.|+-.+.+++.=|..-+.+-++.|-|
T Consensus 92 v~enl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSGG~~Qrv~iAral~~~P~lliLD 168 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLE---RVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLD 168 (236)
T ss_pred HHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHH---HCCCCCHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 89989888876045430011023589999999999999---749980438862669999999999999996599999994
Q ss_pred CCCCCH-----HHHHHHHHHHH
Q ss_conf 998898-----99999999999
Q gi|254781149|r 236 RPSPGI-----MEFVHVANGLR 252 (266)
Q Consensus 236 ~~~~ti-----~~ira~aR~~k 252 (266)
.|.-.+ .+|....|.++
T Consensus 169 EPT~gLD~~~~~~i~~~l~~l~ 190 (236)
T cd03219 169 EPAAGLNPEETEELAELIRELR 190 (236)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8765899999999999999999
No 398
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=0.73 Score=26.21 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=24.4
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 3016836887068741488999999999
Q gi|254781149|r 138 GVQLRELILIGARPSMGKTTFALSTALH 165 (266)
Q Consensus 138 G~~~g~LiviaaRP~mGKTa~alnia~~ 165 (266)
|.++.--+++.|.||.|||.+|-++|..
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~ 299 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALE 299 (494)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8988836999889997589999998754
No 399
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=91.17 E-value=0.29 Score=29.07 Aligned_cols=15 Identities=20% Similarity=-0.177 Sum_probs=5.6
Q ss_pred ECCCCCHHHHHHHHH
Q ss_conf 116753489999999
Q gi|254781149|r 176 FSLEMDREKLGARAL 190 (266)
Q Consensus 176 fSlEMs~~ql~~R~l 190 (266)
-|-||..-.-+.+++
T Consensus 151 ts~E~msL~aannI~ 165 (275)
T PRK13233 151 ASGEMMALYAANNIC 165 (275)
T ss_pred ECCCHHHHHHHHHHH
T ss_conf 468379999999999
No 400
>PRK08149 ATP synthase SpaL; Validated
Probab=91.13 E-value=0.15 Score=30.95 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 85111377777655301683688706874148899999999963
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a 167 (266)
-+.||++.+|-++. +.+|+=+-|=|-+|+|||++...|+.++.
T Consensus 133 ~l~TGIraID~l~p-igkGQR~gIf~gsGvGKs~Ll~~i~~~~~ 175 (427)
T PRK08149 133 PLITGVRAIDGLLT-CGVGQRMGIFASAGCGKTMLMNMLIEHTE 175 (427)
T ss_pred CEECCCEEECCCCC-CCCCCEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 00038643104453-24675400027899867799998886358
No 401
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.05 E-value=0.22 Score=29.89 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=5.8
Q ss_pred CCCCH-HHHHHHHHH
Q ss_conf 67534-899999999
Q gi|254781149|r 178 LEMDR-EKLGARALS 191 (266)
Q Consensus 178 lEMs~-~ql~~R~ls 191 (266)
+=++. +..-.|+..
T Consensus 125 l~i~dee~H~~Rf~~ 139 (197)
T PRK12339 125 LYIRDAELHRSRLAD 139 (197)
T ss_pred EEECCHHHHHHHHHH
T ss_conf 997888999999999
No 402
>KOG0065 consensus
Probab=91.03 E-value=0.11 Score=31.92 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 11377777655301683688706874148899999999963
Q gi|254781149|r 127 WGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 127 TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a 167 (266)
+.+.-|..++|=.+||++.++.||||.|||++...++-+.-
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~ 166 (1391)
T KOG0065 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLD 166 (1391)
T ss_pred CCCEEECCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 32112058633676772699833899864789999837885
No 403
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.99 E-value=0.21 Score=29.96 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 8511137777765530168368870687414889999999996302232364116753
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMD 181 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs 181 (266)
-+.||++.+|-++. +.+|+=+-|-|-+|+|||+++..|+.++. .+..|...--|-.
T Consensus 120 ~l~TGIraID~l~p-igrGQRigIfag~GvGKt~Ll~~ia~~~~-adv~Vi~liGERg 175 (413)
T TIGR03497 120 PLETGIKAIDGLLT-IGKGQRVGIFAGSGVGKSTLLGMIARNAK-ADINVIALIGERG 175 (413)
T ss_pred EEECCCEEECCCCC-CCCCCEEEECCCCCCCHHHHHHHHHHHHC-CCCCEEEEEEEEC
T ss_conf 42038654216576-11375442105899877699999998743-7852388863322
No 404
>PRK02362 ski2-like helicase; Provisional
Probab=90.98 E-value=0.69 Score=26.41 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 999999999972995474799889
Q gi|254781149|r 217 RISQGICEKLQDFPLIIDDRPSPG 240 (266)
Q Consensus 217 ~~i~~a~~~l~~~pl~IdD~~~~t 240 (266)
..+..+.+.|.+..+-..|...+.
T Consensus 465 ~~i~~~l~~L~~~~~i~~~~~~~~ 488 (736)
T PRK02362 465 RVVDDVLEFLRRNGMVEEDGDALR 488 (736)
T ss_pred HHHHHHHHHHHHCCCEECCCCEEE
T ss_conf 999999999997869570598784
No 405
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=90.96 E-value=0.16 Score=30.80 Aligned_cols=104 Identities=14% Similarity=0.097 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC-------CCEEEECCC--CCHHHHHHHHHHHHHC
Q ss_conf 111377777655301683688706874148899999999963-022-------323641167--5348999999996302
Q gi|254781149|r 126 KWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG-------HGVAFFSLE--MDREKLGARALSNLLY 195 (266)
Q Consensus 126 ~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g-------~~Vl~fSlE--Ms~~ql~~R~ls~~t~ 195 (266)
|.|=+-|+++.--+.+|+.+.|-|+.|.|||++.--++--.- .+| ..+.|.+-+ +....+.+.
T Consensus 11 ~~~~~il~~isl~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tl~e~------- 83 (166)
T cd03223 11 PDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQ------- 83 (166)
T ss_pred CCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCHHHH-------
T ss_conf 9999889445889889999999958999889999998698769986799769987999856466588759999-------
Q ss_pred CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 232347855501788998999999999999972995474799889899
Q gi|254781149|r 196 PSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 196 ~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
+.+.. ...|+..|..++.=|-.-+.+-++.|-|.|.-.++.
T Consensus 84 -----l~~p~--~~~LSGGqkQRvalARal~~~p~iliLDEpTs~LD~ 124 (166)
T cd03223 84 -----LIYPW--DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred -----HHCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf -----63615--467899999999999999649999997585332899
No 406
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=90.88 E-value=1.3 Score=24.44 Aligned_cols=124 Identities=18% Similarity=0.100 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCCC--------------------------CEE-EEC---
Q ss_conf 377777655301683688706874148899999999963-0223--------------------------236-411---
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSGH--------------------------GVA-FFS--- 177 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g~--------------------------~Vl-~fS--- 177 (266)
.+.|+++---+++|+.+.|.|..|.|||+++-.++.-.. ..|. .+. +|.
T Consensus 14 ~~vl~~vsl~i~~Ge~~aliG~sGsGKSTLl~~l~gl~~p~~G~i~~~~~~i~~~~~~~~~~~~~~~~r~~ig~vfQ~~~ 93 (248)
T PRK11264 14 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN 93 (248)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEECCCCCCCCCHHHHHHHHHCEEEEECCCC
T ss_conf 99894317798799899999999980999999997589999867999999952887564327799998725279902775
Q ss_pred --CCCC----------------HHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf --6753----------------4899999999630223234785550178899899999999999997299547479988
Q gi|254781149|r 178 --LEMD----------------REKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSP 239 (266)
Q Consensus 178 --lEMs----------------~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ 239 (266)
..|+ .++...|....+..+..... .+-.-++|+-.+..++.-|..-+.+-.+.|-|.|.-
T Consensus 94 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~--~~~~p~~LSGGq~QRvaiAraL~~~P~iLllDEPTs 171 (248)
T PRK11264 94 LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK--ETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTS 171 (248)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCH--HHCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 588877999999999996699889999999999998599513--337801089999889998763147999999879876
Q ss_pred CHH-----HHHHHHHHHHHH
Q ss_conf 989-----999999999999
Q gi|254781149|r 240 GIM-----EFVHVANGLRNK 254 (266)
Q Consensus 240 ti~-----~ira~aR~~k~k 254 (266)
.++ +|....|.++++
T Consensus 172 ~LD~~~~~~i~~~l~~l~~~ 191 (248)
T PRK11264 172 ALDPELVGEVLNTIRQLAQE 191 (248)
T ss_pred CCCHHHHHHHHHHHHHHHHC
T ss_conf 58999999999999999976
No 407
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.77 E-value=0.16 Score=30.81 Aligned_cols=42 Identities=21% Similarity=0.197 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8511137777765530168368870687414889999999996
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM 166 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~ 166 (266)
-+.||++.+|-++. +.+|+=+-|-|-+|+|||++.-.|+.+.
T Consensus 120 pl~TGIraID~l~p-ig~GQR~gIf~g~GvGKs~Ll~~ia~~~ 161 (411)
T TIGR03496 120 PLDVGVRAINGLLT-VGRGQRIGIFAGSGVGKSVLLGMMARYT 161 (411)
T ss_pred CCCCCCEEEECCCC-CCCCCEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 21158346634466-1468631322799986779999997534
No 408
>PRK13409 putative ATPase RIL; Provisional
Probab=90.72 E-value=1.5 Score=24.10 Aligned_cols=115 Identities=19% Similarity=0.166 Sum_probs=68.2
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC-----CCEEEE------CCCCCHHHHHHHHHHHHHCC-----CCCCC
Q ss_conf 01683688706874148899999999963-022-----323641------16753489999999963022-----32347
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMA-MSG-----HGVAFF------SLEMDREKLGARALSNLLYP-----SSSRI 201 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g-----~~Vl~f------SlEMs~~ql~~R~ls~~t~~-----~~s~I 201 (266)
+++|+.+.|-|.-|.|||+|+--+|--.- ..| ..|.|+ ..+++..+...+........ -....
T Consensus 362 i~~GEiigIvG~NGaGKTTLlKiLaG~lkPd~G~V~~~~~isY~pQ~i~~d~~~tV~~~L~~~~~~~~~~~~~~ell~~L 441 (590)
T PRK13409 362 IRKGEVIGIVGPNGIGKTTFVKLLAGVLKPDEGEVDTDLKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL 441 (590)
T ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 60474899988888878999999828877887447547748733600146868819999986244225389999999887
Q ss_pred CHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCC--CHHHHHHHHHHHHH
Q ss_conf 855501---78899899999999999997299547479988--98999999999999
Q gi|254781149|r 202 PYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSP--GIMEFVHVANGLRN 253 (266)
Q Consensus 202 ~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~--ti~~ira~aR~~k~ 253 (266)
...++. -..||-.|..|+.=|.--+.+.+++|-|.|+- -+.+=-..++-+++
T Consensus 442 ~l~~lldk~v~~LSGGEkQRvaLA~~L~~~anvLLLDEPTn~LDvE~R~~~~k~i~~ 498 (590)
T PRK13409 442 NLEKLLDRNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAYLDVEQRLAVARAIRR 498 (590)
T ss_pred CCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 888676496244098999999999986679999999489887788999999999999
No 409
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.69 E-value=0.82 Score=25.88 Aligned_cols=110 Identities=18% Similarity=0.129 Sum_probs=62.1
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CC----------CEE-EE---CC--CCCHH------------
Q ss_conf 01683688706874148899999999963-02------23----------236-41---16--75348------------
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMA-MS------GH----------GVA-FF---SL--EMDRE------------ 183 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~----------~Vl-~f---Sl--EMs~~------------ 183 (266)
+.+|+.+.|-|..|.|||++.--|+--.. .+ |. ++. +| +| -|+..
T Consensus 21 i~~Ge~~~ilGpSGsGKSTLl~li~Gl~~p~sG~I~i~G~di~~~~~~~r~ig~vfQ~~~L~p~ltV~eNi~~~l~~~~~ 100 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK 100 (211)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 88998999999999559999999976999885299999999999998898679995388668999499998758864688
Q ss_pred ---HHHHHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH-HHHHHHHH
Q ss_conf ---99999999630223234785-5501788998999999999999972995474799889899-99999999
Q gi|254781149|r 184 ---KLGARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME-FVHVANGL 251 (266)
Q Consensus 184 ---ql~~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~-ira~aR~~ 251 (266)
+...|+...+..+ ++.. .+-+-++|+-.+..|+.-|-.-+.+-++.+-|.|.-.++. .+...+.+
T Consensus 101 ~~~~~~~~v~~~l~~~---gl~~~~~~~p~~LSGGqkQRvaiARAL~~~P~ilLlDEPts~LD~~~~~~l~~~ 170 (211)
T cd03298 101 LTAEDRQAIEVALARV---GLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170 (211)
T ss_pred CHHHHHHHHHHHHHHC---CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 8299999999999876---998787289455898999999999998659999997188765598999999999
No 410
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=90.61 E-value=0.19 Score=30.26 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=13.2
Q ss_pred CCEEEECCC-CCHHHHHHHHHH
Q ss_conf 323641167-534899999999
Q gi|254781149|r 171 HGVAFFSLE-MDREKLGARALS 191 (266)
Q Consensus 171 ~~Vl~fSlE-Ms~~ql~~R~ls 191 (266)
+++++|-|- |+.++|..|+-.
T Consensus 185 ~~~v~~~l~~~~~e~L~~RI~~ 206 (307)
T TIGR00174 185 YNIVQIGLAPLEREALHERIEQ 206 (307)
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
T ss_conf 4667776300586456778999
No 411
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=90.50 E-value=0.72 Score=26.27 Aligned_cols=10 Identities=10% Similarity=0.185 Sum_probs=4.9
Q ss_pred HCCCCEEEEE
Q ss_conf 0168368870
Q gi|254781149|r 139 VQLRELILIG 148 (266)
Q Consensus 139 ~~~g~Livia 148 (266)
+...+++|++
T Consensus 529 L~~~ewLvaa 538 (812)
T PRK11664 529 LSRHEWLVAP 538 (812)
T ss_pred CCCCCCEEEE
T ss_conf 7788858999
No 412
>PRK09099 type III secretion system ATPase; Provisional
Probab=90.47 E-value=0.16 Score=30.85 Aligned_cols=43 Identities=26% Similarity=0.175 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 85111377777655301683688706874148899999999963
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a 167 (266)
-+.||++.+|-++. +.+|+=+-|-|-+|+|||++.-.++.++.
T Consensus 146 pl~TGIraID~l~p-igrGQR~gIf~gsGvGKstLl~~iar~~~ 188 (441)
T PRK09099 146 PLPTGVRIVDGLMT-LGEGQRMGIFAPAGVGKSTLMGMFARGTQ 188 (441)
T ss_pred CCCCCCEEECCCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 41278562236678-03476330015898878999998987513
No 413
>PRK06936 type III secretion system ATPase; Provisional
Probab=90.43 E-value=0.16 Score=30.76 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 851113777776553016836887068741488999999999630
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM 168 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~ 168 (266)
-+.||++.+|-++. +.+|+=+-|=|-+|+|||++...++.+...
T Consensus 145 pl~TGIraID~llt-~g~GQR~gIfagsGvGKs~Ll~~i~r~~~a 188 (439)
T PRK06936 145 PLSLGVRVIDGLLT-CGEGQRMGIFAAAGGGKSTLLASLIRSAEV 188 (439)
T ss_pred CCCCCCEEEECCCC-HHCCCEEECCCCCCCCHHHHHHHHHHHHCC
T ss_conf 42268555524686-310570102369999889999999764326
No 414
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=90.43 E-value=0.44 Score=27.77 Aligned_cols=51 Identities=22% Similarity=0.156 Sum_probs=40.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHH---HHHC---CCCEEEECCCCCHHHHHHHHHH----HHH
Q ss_conf 6887068741488999999999---6302---2323641167534899999999----630
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALH---MAMS---GHGVAFFSLEMDREKLGARALS----NLL 194 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~---~a~~---g~~Vl~fSlEMs~~ql~~R~ls----~~t 194 (266)
++||-|.+|-|||..||-+|.+ ..++ .+....+-+=.+.+.+..|+.+ ..+
T Consensus 1 ~~v~~APTG~GKTe~aL~~A~~sah~~k~~~~~~~I~alP~r~~~na~~~r~~~sash~Fg 61 (424)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALKSAHLIKKQKADKVIFALPTRVTINAMYRRLKESASHLFG 61 (424)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9688617899878999999986366642244401012202688899999999986775417
No 415
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=90.41 E-value=1.6 Score=23.92 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 99899999999999997299547479988
Q gi|254781149|r 211 INQEQYRISQGICEKLQDFPLIIDDRPSP 239 (266)
Q Consensus 211 l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ 239 (266)
|+-.|.+|+.-|..-+.+.++.+-|.|.-
T Consensus 145 LSgGq~QRvaiAral~~~p~vlllDEPT~ 173 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTG 173 (648)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 89999999999999972898999568855
No 416
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=90.39 E-value=0.41 Score=28.00 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=55.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH--HH----HHHHHHHHCCCCC------------------
Q ss_conf 68870687414889999999996302232364116753489--99----9999963022323------------------
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREK--LG----ARALSNLLYPSSS------------------ 199 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~q--l~----~R~ls~~t~~~~s------------------ 199 (266)
.+|=.|-=|+||||.+=|++...|.-|+.|++.-..-.=.- +. +|++=..-.+-+.
T Consensus 4 iViTSGKGGVGKTTtTANlG~aLA~lG~kVvliD~DiGLRNLD~~lGLEnRivYt~vDVveG~C~l~qALikDKr~~NL~ 83 (272)
T TIGR01968 4 IVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLENLY 83 (272)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 99981788977358989999999961982899954757034577742310354535543248421100100126752356
Q ss_pred CCCHHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 4785550178-89989999999999999729954747998
Q gi|254781149|r 200 RIPYLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRPS 238 (266)
Q Consensus 200 ~I~~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~ 238 (266)
=+|..+.|.- .++.|++..+.+...+-...-.-|-|+|.
T Consensus 84 LLpAsQ~rdK~~~~~E~~~~lv~~Lk~~~~FDYviIDcPA 123 (272)
T TIGR01968 84 LLPASQTRDKDAVTPEQMKKLVNELKEEEHFDYVIIDCPA 123 (272)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 6365302361346977899999998543793079973787
No 417
>KOG3347 consensus
Probab=90.35 E-value=0.19 Score=30.38 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=18.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHH
Q ss_conf 6887068741488999999999
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALH 165 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~ 165 (266)
=|+|.|-||.|||+|+..+|..
T Consensus 9 NILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347 9 NILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CEEEECCCCCCCHHHHHHHHHH
T ss_conf 8798679998802599999997
No 418
>KOG3022 consensus
Probab=90.30 E-value=0.43 Score=27.80 Aligned_cols=51 Identities=20% Similarity=0.408 Sum_probs=38.9
Q ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf 7765530168368870687414889999999996302232364116753489
Q gi|254781149|r 133 DHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREK 184 (266)
Q Consensus 133 D~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~q 184 (266)
-..+.|.+. -..|..|.-|+|||+++.|+|+..|..|+.|.++.....--.
T Consensus 40 ~~~l~~vk~-iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPS 90 (300)
T KOG3022 40 QENLSGVKH-IILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPS 90 (300)
T ss_pred CCCCCCCCE-EEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 233134545-899986788776168999999998617971799750355877
No 419
>PRK06547 hypothetical protein; Provisional
Probab=90.30 E-value=0.31 Score=28.79 Aligned_cols=28 Identities=32% Similarity=0.334 Sum_probs=20.8
Q ss_pred HCCCCE--EEEECCCCHHHHHHHHHHHHHH
Q ss_conf 016836--8870687414889999999996
Q gi|254781149|r 139 VQLREL--ILIGARPSMGKTTFALSTALHM 166 (266)
Q Consensus 139 ~~~g~L--iviaaRP~mGKTa~alnia~~~ 166 (266)
+..|+. |-|=||-|.|||+||-.++...
T Consensus 10 ~~~g~~~iVaIDG~sGaGKTTLA~~La~~~ 39 (184)
T PRK06547 10 LCGGDMITVLIDGRSGSGKTTLAGELAACW 39 (184)
T ss_pred HCCCCEEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 559976999986899888899999999745
No 420
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=90.26 E-value=0.25 Score=29.47 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 88706874148899999999963
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a 167 (266)
+++-|.||+|||++|.-+|...-
T Consensus 53 ~lf~GPPG~GKTTlAriiAk~~~ 75 (234)
T pfam05496 53 VLLYGPPGLGKTTLANIIANEMG 75 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 78878999988899999998408
No 421
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=90.24 E-value=0.83 Score=25.84 Aligned_cols=51 Identities=22% Similarity=0.122 Sum_probs=39.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEECC-CCCHHHHHHHHHHHH
Q ss_conf 3688706874148899999999963022--32364116-753489999999963
Q gi|254781149|r 143 ELILIGARPSMGKTTFALSTALHMAMSG--HGVAFFSL-EMDREKLGARALSNL 193 (266)
Q Consensus 143 ~LiviaaRP~mGKTa~alnia~~~a~~g--~~Vl~fSl-EMs~~ql~~R~ls~~ 193 (266)
.-.+|.+.||.|||..++..+......+ .+|++++- ---..|+..++....
T Consensus 25 ~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~q~~~~~~~~~ 78 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 988998999960999999999998633899759999085999999998860102
No 422
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=90.23 E-value=1.6 Score=23.82 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=19.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 368870687414889999999996
Q gi|254781149|r 143 ELILIGARPSMGKTTFALSTALHM 166 (266)
Q Consensus 143 ~LiviaaRP~mGKTa~alnia~~~ 166 (266)
-++++||-||.|||+++-.+....
T Consensus 13 kai~laG~pGAGKS~~~~~~~~~~ 36 (191)
T pfam06414 13 VAVLLGGQPGAGKTELARALLEEL 36 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799995799888899999998753
No 423
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=90.21 E-value=0.21 Score=29.97 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 851113777776553016836887068741488999999999630
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM 168 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~ 168 (266)
-+.||++.+|-++. +.+|+=+-|-|-+|+|||.++..++.++..
T Consensus 126 ~l~TGI~~ID~l~p-l~rGQr~~If~gsGvgks~l~~~i~~qa~~ 169 (460)
T PRK04196 126 FIQTGISAIDGLNT-LVRGQKLPIFSGSGLPHNELAAQIARQAKV 169 (460)
T ss_pred EECCCCEEEECCCC-EECCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 61379679616433-224757655338998811699999998775
No 424
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=90.20 E-value=1.1 Score=25.09 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=63.2
Q ss_pred EECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 70687414889999999996302232364116753489999999963022323478555017889989999999999999
Q gi|254781149|r 147 IGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKL 226 (266)
Q Consensus 147 iaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l 226 (266)
+=+-||.|||++.-+++.+.-. ..|++..--.|..+.=++|+=+ .+++...+.+|+-=.=|-+-+..+...+
T Consensus 39 fmsspGSGKT~LiEk~~~~~~~-~~K~Avi~GD~~t~~DA~RlR~-------~G~~a~~~nTGk~CHLdA~mv~G~~~~L 110 (225)
T TIGR00073 39 FMSSPGSGKTTLIEKLIERLDD-EVKIAVIEGDVQTKNDADRLRK-------YGVPAIQINTGKECHLDAHMVAGAIHAL 110 (225)
T ss_pred ECCCCCCCHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHH-------CCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 0258861158999999998457-8978999755322556999986-------4986886368864440166786587554
Q ss_pred HHCCC
Q ss_conf 72995
Q gi|254781149|r 227 QDFPL 231 (266)
Q Consensus 227 ~~~pl 231 (266)
+++|+
T Consensus 111 ~~~~l 115 (225)
T TIGR00073 111 KDLPL 115 (225)
T ss_pred HCCCC
T ss_conf 21688
No 425
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=90.18 E-value=0.15 Score=30.93 Aligned_cols=43 Identities=21% Similarity=0.153 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 85111377777655301683688706874148899999999963
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a 167 (266)
-+.||++.+|-++. +.+|+=+-|=|-+|+|||+++..|+.+..
T Consensus 141 pl~TGIraID~l~p-igrGQR~gIf~g~GvGKt~Ll~~i~~~~~ 183 (435)
T PRK08472 141 VFSVGVKSIDGLLT-CGKGQKLGIFAGSGVGKSTLMGMIVKGCL 183 (435)
T ss_pred CCCCCCEEEECCCC-CCCCCEEECCCCCCCCCCHHHHHHHHHHC
T ss_conf 41158557743266-24776651235899983357888877615
No 426
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=90.15 E-value=0.57 Score=26.99 Aligned_cols=122 Identities=19% Similarity=0.104 Sum_probs=73.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC----------CEEE------ECCCCCHHHHH
Q ss_conf 777776553016836887068741488999999999630-------223----------2364------11675348999
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH----------GVAF------FSLEMDREKLG 186 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~----------~Vl~------fSlEMs~~ql~ 186 (266)
..||++.--+.+|+.+-+.|+-|.|||++.--++--..- .|+ .+.+ |--.|+..|..
T Consensus 14 ~al~~vs~~v~~Gei~gllG~NGaGKSTLl~~i~Gl~~p~~G~i~i~G~~~~~~~~~~~~ig~~~~~~~l~~~ltv~e~l 93 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL 93 (208)
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHEEEEECCCCCCCCCCHHHHH
T ss_conf 98715166886981999999999999999999957837898999999999997968571089994777678988999999
Q ss_pred HHHHHHHHCCCCCC---------CC-HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHH
Q ss_conf 99999630223234---------78-5550178899899999999999997299547479988989-----999999999
Q gi|254781149|r 187 ARALSNLLYPSSSR---------IP-YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGL 251 (266)
Q Consensus 187 ~R~ls~~t~~~~s~---------I~-~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~ 251 (266)
++.+..-+..... +. ..+-+-+.|+-.+.+++.=|..-+.+.++.|=|.|...++ +++...|.+
T Consensus 94 -~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrl~la~al~~~p~lliLDEPt~GLD~~~~~~i~~~l~~l 172 (208)
T cd03268 94 -RLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL 172 (208)
T ss_pred -HHHHHHCCCCHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf -9999874998899999999809950336903569999999999999985699999993887689999999999999999
Q ss_pred H
Q ss_conf 9
Q gi|254781149|r 252 R 252 (266)
Q Consensus 252 k 252 (266)
+
T Consensus 173 ~ 173 (208)
T cd03268 173 R 173 (208)
T ss_pred H
T ss_conf 9
No 427
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.10 E-value=1.7 Score=23.75 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=70.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-HHCC------C------------CEEEEC-------CCC---
Q ss_conf 7777765530168368870687414889999999996-3022------3------------236411-------675---
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM-AMSG------H------------GVAFFS-------LEM--- 180 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~-a~~g------~------------~Vl~fS-------lEM--- 180 (266)
+.|+++.--+.+|+.+.|.|.-|.|||++.-.++--. ..+| . .+.|.. +.+
T Consensus 15 ~~L~~vsl~i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ig~v~Q~p~~~~~~~tv~ 94 (211)
T cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVE 94 (211)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEECCCCCHHHHHCCEEEEEECCHHHCCCCCHH
T ss_conf 57753178884997999988999989999999964677988877899999997998998403899977832530558699
Q ss_pred ------------CHHHHHHHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----
Q ss_conf ------------34899999999630223234785-550178899899999999999997299547479988989-----
Q gi|254781149|r 181 ------------DREKLGARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM----- 242 (266)
Q Consensus 181 ------------s~~ql~~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~----- 242 (266)
+..+...|.-..+.. -++.. .+-.-..|+..+..++.-|..-+.+.++.|-|.|.-.++
T Consensus 95 e~i~~~~~~~~~~~~~~~~~~~~~l~~---~~l~~~~~~~~~~LSGGqkQrv~iAral~~~P~ililDEPTsgLD~~~~~ 171 (211)
T cd03225 95 EEVAFGLENLGLPEEEIEERVEEALEL---VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171 (211)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 999999998699999999999999998---69946663895459998999999999997599999997985558999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254781149|r 243 EFVHVANGLRN 253 (266)
Q Consensus 243 ~ira~aR~~k~ 253 (266)
+|....+.+++
T Consensus 172 ~i~~~l~~l~~ 182 (211)
T cd03225 172 ELLELLKKLKA 182 (211)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999997
No 428
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=90.09 E-value=0.19 Score=30.31 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-------HCCCC--------------------------
Q ss_conf 111377777655301683688706874148899999999963-------02232--------------------------
Q gi|254781149|r 126 KWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-------MSGHG-------------------------- 172 (266)
Q Consensus 126 ~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-------~~g~~-------------------------- 172 (266)
++|.+.||.+=--..||+.+=+-||.|.|||+++-=|-+-.- .+|++
T Consensus 372 ~~~~~aL~~i~l~~~~G~~vALVGRSGSGKsTlv~LlPRFy~p~~G~IllDG~~l~d~~L~~LR~q~alVsQ~V~LFdDT 451 (603)
T TIGR02203 372 GRDRPALDSISLVVEPGETVALVGRSGSGKSTLVNLLPRFYEPDSGQILLDGVDLQDYTLADLRRQVALVSQDVVLFDDT 451 (603)
T ss_pred CCCHHHHCCCCCEECCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEECCCHHHHCCHHHHHHHHHHHCCCEEECCCC
T ss_conf 88724123666511587359987068853899985523660458885652784044302663562300021523720532
Q ss_pred ----EEEECC---CCCHHHHHHHHHHHHHCCCCC----CCCHHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf ----364116---753489999999963022323----4785550178-899899999999999997299547479988
Q gi|254781149|r 173 ----VAFFSL---EMDREKLGARALSNLLYPSSS----RIPYLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRPSP 239 (266)
Q Consensus 173 ----Vl~fSl---EMs~~ql~~R~ls~~t~~~~s----~I~~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ 239 (266)
|.|=-. +.+.+++-.=+-++.-.-=.- +++.+==.+| +||-.+-.|+.-|=.-+++.||-|=|.+.-
T Consensus 452 iA~NvaYg~~da~~~~~a~v~~A~~~Ayl~dfvd~lP~Gldt~vG~NG~~LSGGQRQRlAIARAllKdAPiLILDEATS 530 (603)
T TIGR02203 452 IANNVAYGRLDAEQVDRAEVERALAAAYLQDFVDKLPLGLDTPVGENGSRLSGGQRQRLAIARALLKDAPILILDEATS 530 (603)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 6776440423400178789999999864688871478885634241322377604589999999974266237778873
No 429
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=90.08 E-value=0.35 Score=28.43 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=26.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf 887068741488999999999630223236411675348999
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLG 186 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~ 186 (266)
+++=|.||+|||+++..+|...-..-.. .-+|-.+...++.
T Consensus 2 VLL~GppG~GKT~l~~~lA~~~~~~~~~-i~~~~~~~~~Dl~ 42 (131)
T pfam07726 2 VLLEGVPGLAKTLLARTLARSLGLDFRR-IQFTPDLLPSDIT 42 (131)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEE-EEECCCCCCCCCC
T ss_conf 8789899876999999999995998168-8833776700036
No 430
>TIGR02746 TraC-F-type type-IV secretion system protein TraC; InterPro: IPR014117 The proteins in this entry are found in the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The proteins contain the Walker A and B motifs and so are putative nucleotide triphosphatases..
Probab=90.08 E-value=0.67 Score=26.48 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHCC-CCE-EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC---CCCH
Q ss_conf 3777776553016-836-8870687414889999999996302232364116753489999999963022323---4785
Q gi|254781149|r 129 LQSVDHLMGGVQL-REL-ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSS---RIPY 203 (266)
Q Consensus 129 ~~~LD~~~gG~~~-g~L-iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s---~I~~ 203 (266)
+..+|=..++..| ++. ++|.|.||-|||-|+..++.+..-.|..|.++-+==|-+.|..-+=- +.++.+ .|-.
T Consensus 474 l~~~d~F~~~~~~i~NYN~~~~g~sG~GKSf~~Q~~~~~~L~~G~kv~viDvG~Sy~KLC~~lgG--~Yie~~~e~~i~L 551 (900)
T TIGR02746 474 LSAFDPFDSDLLNITNYNIAVVGGSGAGKSFFMQELIVSVLSRGGKVWVIDVGRSYKKLCEMLGG--TYIEFSPESTICL 551 (900)
T ss_pred EEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCC--CEECCCCCCCCCC
T ss_conf 87783033786676771489972889871687989999985179848999607884888765187--1210466776323
Q ss_pred HHCC-----------------CCCCCH----HHHHHHHHHHHHHH
Q ss_conf 5501-----------------788998----99999999999997
Q gi|254781149|r 204 LNLI-----------------RGEINQ----EQYRISQGICEKLQ 227 (266)
Q Consensus 204 ~~l~-----------------~g~l~~----~e~~~i~~a~~~l~ 227 (266)
+-+. ...-=+ ++...|...+..|.
T Consensus 552 NPFTHL~i~~A~~~~~~~~~~~v~~i~Geqv~~~~~i~~~ia~MA 596 (900)
T TIGR02746 552 NPFTHLDIEEARFDIIDFDGNNVTEIDGEQVDEIDQITALIALMA 596 (900)
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 874446600033322673634677567402889999999999884
No 431
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.08 E-value=0.42 Score=27.91 Aligned_cols=54 Identities=19% Similarity=0.184 Sum_probs=35.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf 7777765530168368870687414889999999996302232364116753489999
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGA 187 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~ 187 (266)
..|.+++. +|+=|++++|.+|.|||++.-.+.......+.. ++++|=|-|....
T Consensus 70 ~~l~~~~~--~~~GlilitGptGSGKtTtl~a~l~~~~~~~~~--i~tiEdPvE~~~~ 123 (264)
T cd01129 70 EIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELNTPEKN--IITVEDPVEYQIP 123 (264)
T ss_pred HHHHHHHH--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCE--EEEEECCCCCCCC
T ss_conf 99999970--899889997899997799999999864368850--8998676314568
No 432
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=90.07 E-value=0.27 Score=29.24 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHH-HHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 7851113777776-553016836887068741488999999999630223
Q gi|254781149|r 123 PDIKWGLQSVDHL-MGGVQLRELILIGARPSMGKTTFALSTALHMAMSGH 171 (266)
Q Consensus 123 ~Gi~TG~~~LD~~-~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~ 171 (266)
..+|-|...-.+. .-.+...-=+.|+|.||+|||.|..++....+....
T Consensus 18 l~vp~G~~~~G~pv~~dl~~~pH~Lv~G~tGsGKS~~l~~li~sl~~~~~ 67 (202)
T pfam01580 18 LTIALGKDISGNPVVADLVKMPHLLIAGATGSGKSTFLNTLILSLAARHS 67 (202)
T ss_pred CEEEEEECCCCCEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 14877767999989986356886899658999800999999999987379
No 433
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family; InterPro: IPR005700 The bacterial exopolysaccharide transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed at least seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.; GO: 0015542 sugar efflux transmembrane transporter activity, 0006859 extracellular carbohydrate transport.
Probab=90.07 E-value=1.1 Score=25.06 Aligned_cols=62 Identities=18% Similarity=0.344 Sum_probs=50.4
Q ss_pred HHHHHHHHHHCCCCEE-EEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 7777765530168368-8706874148899999999963022323641167534899999999
Q gi|254781149|r 130 QSVDHLMGGVQLRELI-LIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALS 191 (266)
Q Consensus 130 ~~LD~~~gG~~~g~Li-viaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls 191 (266)
..+|.+..+-.+.-+| +-+++|+.||+...-|++.=+|..|+.++|++-||.+-.+.+=+..
T Consensus 549 ~a~~~a~~~ae~~Pvv~~~~p~p~~Gks~i~an~aaliA~ggkR~llidad~rk~~l~q~~~~ 611 (778)
T TIGR01005 549 EAVDEALADAESEPVVALASPLPDVGKSIIEANLAALIAAGGKRVLLIDADIRKAALSQILVK 611 (778)
T ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC
T ss_conf 899999850489875885688886656889999999983268717873267760555644214
No 434
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=90.05 E-value=0.45 Score=27.71 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=15.4
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 323641167534899999999630
Q gi|254781149|r 171 HGVAFFSLEMDREKLGARALSNLL 194 (266)
Q Consensus 171 ~~Vl~fSlEMs~~ql~~R~ls~~t 194 (266)
.-..+-|-||..-.-++|+++.+.
T Consensus 143 ~~~IVts~e~~al~aAnnI~~~i~ 166 (269)
T PRK13185 143 YALIVTANDFDSIFAANRIAAAIQ 166 (269)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 899992530878999999999998
No 435
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=90.01 E-value=1 Score=25.27 Aligned_cols=124 Identities=11% Similarity=0.091 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-----H------CC----------CCEEE-E-CCC------
Q ss_conf 377777655301683688706874148899999999963-----0------22----------32364-1-167------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-----M------SG----------HGVAF-F-SLE------ 179 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-----~------~g----------~~Vl~-f-SlE------ 179 (266)
-+-||++---+.+|+.+-|-|..|.|||+++..+.--.. . .| +.+.+ | .-.
T Consensus 16 ~~vL~~Isl~v~~Ge~~aiiG~SGsGKStl~k~llgll~~~~~~~~G~i~~dg~~~~~~~~r~r~i~~v~Q~p~~~~~p~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLADGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEECCEEEECCEECCHHHHCCCCEEEEEECCHHHCCHH
T ss_conf 70886607289899999999999878999999995799889841578999999999603430550899983752213768
Q ss_pred CC-HHHHHH------------HHHHHHHCCCCCCCC-HHHC---CCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 53-489999------------999963022323478-5550---178899899999999999997299547479988989
Q gi|254781149|r 180 MD-REKLGA------------RALSNLLYPSSSRIP-YLNL---IRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 180 Ms-~~ql~~------------R~ls~~t~~~~s~I~-~~~l---~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
++ .+++.. |+...+-. -++. ..++ .-.+|+..+.+|+.-|..-+.+-++.|-|.|.-.++
T Consensus 96 ~~v~~~~~~~~~~~~~~~~~~~~~~~l~~---vgL~~~~~~l~~~P~qLSGGq~QRvaiArAL~~~P~lLilDEPTs~LD 172 (254)
T PRK10418 96 HTMHTHARETCLALGKPADDATLTAAIEA---VGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172 (254)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHH---CCCCCHHHHHHHCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 89999999999865820599999999998---399986887641926348799999999999854999898558754379
Q ss_pred -----HHHHHHHHHHHHH
Q ss_conf -----9999999999994
Q gi|254781149|r 243 -----EFVHVANGLRNKH 255 (266)
Q Consensus 243 -----~ira~aR~~k~k~ 255 (266)
+|....+++.+++
T Consensus 173 ~~~~~~il~ll~~l~~~~ 190 (254)
T PRK10418 173 VVAQARILDLLESIVQKR 190 (254)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999970
No 436
>PRK05480 uridine kinase; Provisional
Probab=90.01 E-value=0.38 Score=28.22 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=25.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 368870687414889999999996302232364116
Q gi|254781149|r 143 ELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSL 178 (266)
Q Consensus 143 ~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSl 178 (266)
=+|-|||-+|.|||+||-.++...-. ..|.++|+
T Consensus 7 ~iIgIaG~SgSGKTT~a~~L~~~l~~--~~v~vi~~ 40 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGD--ESIAVISQ 40 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCC--CCEEEEEC
T ss_conf 89999899977899999999998086--87599955
No 437
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=1.7 Score=23.70 Aligned_cols=126 Identities=15% Similarity=0.242 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHHHHHCCC-----CEEEECCCCCHHHH-----------HHHHH
Q ss_conf 377777655301--6836887068741488999999999630223-----23641167534899-----------99999
Q gi|254781149|r 129 LQSVDHLMGGVQ--LRELILIGARPSMGKTTFALSTALHMAMSGH-----GVAFFSLEMDREKL-----------GARAL 190 (266)
Q Consensus 129 ~~~LD~~~gG~~--~g~LiviaaRP~mGKTa~alnia~~~a~~g~-----~Vl~fSlEMs~~ql-----------~~R~l 190 (266)
=.++.+++.=+. ..+--|+-|-||+||||.+-.+|..++.... .+-++||.|+.-+- ...++
T Consensus 176 d~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl 255 (786)
T COG0542 176 DEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVL 255 (786)
T ss_pred HHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 79999999998356889984766898889999989999974699997875887997148767464653573899999999
Q ss_pred HHHH------------------------CCCCCCCCHHHCCCCCC------CHHHHHHHHHHHHHHHH--CCCEEECCCC
Q ss_conf 9630------------------------22323478555017889------98999999999999972--9954747998
Q gi|254781149|r 191 SNLL------------------------YPSSSRIPYLNLIRGEI------NQEQYRISQGICEKLQD--FPLIIDDRPS 238 (266)
Q Consensus 191 s~~t------------------------~~~~s~I~~~~l~~g~l------~~~e~~~i~~a~~~l~~--~pl~IdD~~~ 238 (266)
-... ..+.+++--+.+.+|++ +.+|++++..--.-+.. -|++++.
T Consensus 256 ~ev~~~~~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~E--- 332 (786)
T COG0542 256 KEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDE--- 332 (786)
T ss_pred HHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCHHHHHCCCEEECCC---
T ss_conf 99851798499982355405777666665125664677874587379973558999887330667784675102799---
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 8989999999999999479
Q gi|254781149|r 239 PGIMEFVHVANGLRNKHTK 257 (266)
Q Consensus 239 ~ti~~ira~aR~~k~k~~~ 257 (266)
+|+.+=-...|-+|.+|+.
T Consensus 333 Ps~e~ti~ILrGlk~~yE~ 351 (786)
T COG0542 333 PSVEDTIAILRGLKERYEA 351 (786)
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 8989999999877888877
No 438
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=89.99 E-value=0.95 Score=25.43 Aligned_cols=120 Identities=20% Similarity=0.142 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH--CCCCEEEEC--------------------------CC
Q ss_conf 13777776553016836887068741488999999999630--223236411--------------------------67
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM--SGHGVAFFS--------------------------LE 179 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~--~g~~Vl~fS--------------------------lE 179 (266)
|.+.||++.--+.+|+.+.|.|.-|.|||++.--++ .... +| .|.|.- .+
T Consensus 14 ~~~al~~vsl~v~~Gei~~liGpNGaGKSTLl~~i~-Gl~~p~~G-~I~~~G~~i~~~~~~~~~~~gIg~~~Q~~~l~~~ 91 (242)
T TIGR03411 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVIT-GKTRPDEG-SVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCCCCE-EEEECCEECCCCCHHHHHHCCCCEECCCCCCCCC
T ss_conf 989874507898899899999899975999999996-79578855-9999999888999999997488545266676766
Q ss_pred CCHHHH-----------------------HHHHHHHHHCCCCCCCC-HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 534899-----------------------99999963022323478-555017889989999999999999729954747
Q gi|254781149|r 180 MDREKL-----------------------GARALSNLLYPSSSRIP-YLNLIRGEINQEQYRISQGICEKLQDFPLIIDD 235 (266)
Q Consensus 180 Ms~~ql-----------------------~~R~ls~~t~~~~s~I~-~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD 235 (266)
|+-.|- ..|+-..+..+ ++. ..+-.-+.|+-.+.+++.-|..-+.+-.+.|-|
T Consensus 92 ltv~enl~~~~~~~~~~~~~l~~~~~~~~~~~v~~~l~~~---~L~~~~~~~~~~LSgGqkqrv~iA~aL~~~P~lllLD 168 (242)
T TIGR03411 92 LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI---GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLD 168 (242)
T ss_pred CCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHC---CCCHHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9799999998751555024430366499999999999877---9972655863459978999999999997389989991
Q ss_pred CCCCCH-----HHHHHHHHHHH
Q ss_conf 998898-----99999999999
Q gi|254781149|r 236 RPSPGI-----MEFVHVANGLR 252 (266)
Q Consensus 236 ~~~~ti-----~~ira~aR~~k 252 (266)
.|.-.+ .+|....+.++
T Consensus 169 EPt~gLD~~~~~~i~~ll~~l~ 190 (242)
T TIGR03411 169 EPVAGMTDEETEKTAELLKSLA 190 (242)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8643699899999999999985
No 439
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=89.92 E-value=0.73 Score=26.25 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=62.7
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHH-HHH------HHCCCCEEE---------E--------------CCCC-CHHHHHH
Q ss_conf 0168368870687414889999999-996------302232364---------1--------------1675-3489999
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTA-LHM------AMSGHGVAF---------F--------------SLEM-DREKLGA 187 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia-~~~------a~~g~~Vl~---------f--------------SlEM-s~~ql~~ 187 (266)
.++||++.|-|--|.|||+|+.-+. +.. -.+|+||-= | ..|- ...|...
T Consensus 346 ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~ 425 (546)
T COG4615 346 IKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIE 425 (546)
T ss_pred EECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 73373899988899638899999970668888826678934884478999999999964565268762965679867899
Q ss_pred HHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf 9999630223234785550178899899999999999997299547479
Q gi|254781149|r 188 RALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDR 236 (266)
Q Consensus 188 R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~ 236 (266)
..+..+--...-.+..+.+-.-+++..+..++.--...+.+-||++-|.
T Consensus 426 ~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DE 474 (546)
T COG4615 426 KWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDE 474 (546)
T ss_pred HHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEH
T ss_conf 9999998766500057863200045305878999999973098688601
No 440
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=89.91 E-value=0.39 Score=28.13 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 16836887068741488999999999630
Q gi|254781149|r 140 QLRELILIGARPSMGKTTFALSTALHMAM 168 (266)
Q Consensus 140 ~~g~LiviaaRP~mGKTa~alnia~~~a~ 168 (266)
+.+-.++|+|.+|.|||+|.-.+....-.
T Consensus 137 ~~~~~ilIsG~TGSGKTT~l~all~~i~~ 165 (283)
T pfam00437 137 QARGNILVSGGTGSGKTTLLYALLNEINT 165 (283)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 81975999889999889999999984087
No 441
>PRK03839 putative kinase; Provisional
Probab=89.90 E-value=0.32 Score=28.77 Aligned_cols=39 Identities=15% Similarity=-0.022 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHH--HCCCEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999997--29954747998898999999999999
Q gi|254781149|r 215 QYRISQGICEKLQ--DFPLIIDDRPSPGIMEFVHVANGLRN 253 (266)
Q Consensus 215 e~~~i~~a~~~l~--~~pl~IdD~~~~ti~~ira~aR~~k~ 253 (266)
+|+.+.-...+.. .-+.+.-|+++.|+.++..+....-.
T Consensus 112 eaEil~vil~Ea~e~~~~~~eidtt~~~pe~v~~~I~~~i~ 152 (180)
T PRK03839 112 EAELVDVILIEALEEHENVIEVDTTNKTPEEVVEEILNLIK 152 (180)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99999999999998439889998999999999999999995
No 442
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.89 E-value=1.7 Score=23.63 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 8899899999999999997299547479988989
Q gi|254781149|r 209 GEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 209 g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
+.||..+.+++.-|..-+.+.++.|-|.|.-.++
T Consensus 138 ~~LSGGq~QRvaIAraL~~~P~iLlLDEPTs~LD 171 (255)
T cd03236 138 DQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171 (255)
T ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 5589999999999997368999999979876589
No 443
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=89.87 E-value=1.7 Score=23.63 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=68.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH-------HHHCCC------------------CEEE-E-------
Q ss_conf 777776553016836887068741488999999999-------630223------------------2364-1-------
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALH-------MAMSGH------------------GVAF-F------- 176 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~-------~a~~g~------------------~Vl~-f------- 176 (266)
..|+++---+.+|+.+.|.|+.|.|||++.--++.- +...|+ .|.| |
T Consensus 16 ~aL~dvsl~i~~Ge~~~iiG~nGaGKSTLl~~l~gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~lr~~ig~VfQ~~~l~~ 95 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRQNVGMVFQQYNLWP 95 (242)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHCCEEEEEECCCCCC
T ss_conf 98942077887998999999999719999999965888886089999999634678887799997558089930786687
Q ss_pred --------------CCCCCHHHHHHHHHHHHHCCCCCCCCHHHC-CCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH
Q ss_conf --------------167534899999999630223234785550-17889989999999999999729954747998898
Q gi|254781149|r 177 --------------SLEMDREKLGARALSNLLYPSSSRIPYLNL-IRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI 241 (266)
Q Consensus 177 --------------SlEMs~~ql~~R~ls~~t~~~~s~I~~~~l-~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti 241 (266)
...++..+.-.|....+..+ ++....- .-..|+-.+..++.-|..-+.+-++.|-|.|.-.+
T Consensus 96 ~~tv~en~~~~~~~~~g~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPTs~L 172 (242)
T PRK11124 96 HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERL---RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172 (242)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCHHHHHCCCHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 8668788888999984998789999999999876---9777763873227999989999876433799799976886548
Q ss_pred H-----HHHHHHHHHH
Q ss_conf 9-----9999999999
Q gi|254781149|r 242 M-----EFVHVANGLR 252 (266)
Q Consensus 242 ~-----~ira~aR~~k 252 (266)
+ +|....+.++
T Consensus 173 D~~~~~~i~~ll~~l~ 188 (242)
T PRK11124 173 DPEITAQIVSIIRELA 188 (242)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 9999999999999998
No 444
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=89.87 E-value=0.51 Score=27.34 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 785111377777655301683688706874148899999999963
Q gi|254781149|r 123 PDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 123 ~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a 167 (266)
.-+.||+..+|-++- +.+|+=+-|=|-.|+|||++.-.++.+..
T Consensus 147 epL~TGIkaID~l~p-igrGQR~gIfgg~GvGKTtLl~~i~~~~~ 190 (450)
T PRK06002 147 TPLRTGVRVIDIFTP-LCAGQRIGIFAGSGVGKSTLLAMLARADA 190 (450)
T ss_pred CCCCCCHHHHHHHCC-CCCCCEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 766310313342146-01487777426899987599999986258
No 445
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=89.83 E-value=0.54 Score=27.15 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=56.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEE-CC-CCCH---------HHHHHHHHHHHHCCCCCCCCHHHC
Q ss_conf 16836887068741488999999999630223--23641-16-7534---------899999999630223234785550
Q gi|254781149|r 140 QLRELILIGARPSMGKTTFALSTALHMAMSGH--GVAFF-SL-EMDR---------EKLGARALSNLLYPSSSRIPYLNL 206 (266)
Q Consensus 140 ~~g~LiviaaRP~mGKTa~alnia~~~a~~g~--~Vl~f-Sl-EMs~---------~ql~~R~ls~~t~~~~s~I~~~~l 206 (266)
...+++++.|.+|.|||-+|+..|+....+|+ .+.+. +. |+.+ +|=+.=++..+ .+.
T Consensus 17 ~~~~iv~~~GpAGtGKT~la~~~al~~l~~~~~~kiii~Rp~v~~g~~iGfLPG~~~eK~~p~~~p~----------~d~ 86 (205)
T pfam02562 17 RKNDIVFGIGPAGTGKTYLAVAAAVDALKDGKVKRIILTRPAVEAGEKLGFLPGDLEEKVDPYLRPL----------YDA 86 (205)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH----------HHH
T ss_conf 1798079989998609999999999999718943799975771257754558897899999999999----------999
Q ss_pred CCCCCCHHHHHHHHH-------HHH-----HHHHCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 178899899999999-------999-----997299547479988989999999999
Q gi|254781149|r 207 IRGEINQEQYRISQG-------ICE-----KLQDFPLIIDDRPSPGIMEFVHVANGL 251 (266)
Q Consensus 207 ~~g~l~~~e~~~i~~-------a~~-----~l~~~pl~IdD~~~~ti~~ira~aR~~ 251 (266)
-..-+..++++.+.+ ... .+.+.=+.+|+.-++|.+|++.-.-|+
T Consensus 87 l~~~~~~~~~~~l~~~~~Ie~~pl~~iRGrTf~n~~iIvDEaQN~t~~~lk~ilTRi 143 (205)
T pfam02562 87 LYDMLGAEKVEKLIERGVIEIAPLAYMRGRTLNDAFIILDEAQNTTPEQMKMFLTRI 143 (205)
T ss_pred HHHHHCHHHHHHHHHCCCEEECCHHHHCCCCCCCCEEEEECHHCCCHHHHHHHHHHC
T ss_conf 998728999999997597566146765547625688999722139999999998421
No 446
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=89.83 E-value=1.7 Score=23.60 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=58.4
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH------CCCC------------EEEECCC------CC------
Q ss_conf 7776553016836887068741488999999999630------2232------------3641167------53------
Q gi|254781149|r 132 VDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM------SGHG------------VAFFSLE------MD------ 181 (266)
Q Consensus 132 LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~------~g~~------------Vl~fSlE------Ms------ 181 (266)
|+.+.--+++|+++.|-|+-|.|||++.--++--.-. .|++ ..|++.+ |+
T Consensus 13 L~~isl~v~~Ge~v~iiGpNGaGKSTLlk~i~Gl~p~~G~I~i~g~~i~~~~~~~~~~~~~~l~q~~~~~~~~~v~~~~~ 92 (245)
T PRK03695 13 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGLLSGSGEIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFHYLT 92 (245)
T ss_pred CCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHCEEEEEECCCCCCCCCHHHHHH
T ss_conf 50748999599899999789941999999984668889659999997353898887430689962356455773999986
Q ss_pred -------HHHHHHHHHHHHHCCCCCCCCHHH-CCCCCCCHHHHHHHHHHHHHHH-------HCCCEEECCCCCCHH
Q ss_conf -------489999999963022323478555-0178899899999999999997-------299547479988989
Q gi|254781149|r 182 -------REKLGARALSNLLYPSSSRIPYLN-LIRGEINQEQYRISQGICEKLQ-------DFPLIIDDRPSPGIM 242 (266)
Q Consensus 182 -------~~ql~~R~ls~~t~~~~s~I~~~~-l~~g~l~~~e~~~i~~a~~~l~-------~~pl~IdD~~~~ti~ 242 (266)
..+-..+++... ++.... -.-+.|+..+++++.-|..-+. +..+.+-|.|...++
T Consensus 93 l~~~~~~~~~~~~~~l~~~------~l~~~~~~~~~~LSgGq~Qrv~la~all~i~~a~~p~p~illLDEPt~gLD 162 (245)
T PRK03695 93 LHQPAKTRTGALNDVAGAL------GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD 162 (245)
T ss_pred HCCCCCHHHHHHHHHHHHC------CCCHHHCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCC
T ss_conf 0386211899999999985------994154879266898899999999999632723278887899738766789
No 447
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=89.74 E-value=0.33 Score=28.59 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=7.2
Q ss_pred EECCCCCHHHHHHHHHH
Q ss_conf 41167534899999999
Q gi|254781149|r 175 FFSLEMDREKLGARALS 191 (266)
Q Consensus 175 ~fSlEMs~~ql~~R~ls 191 (266)
|+.-+|+-++...++..
T Consensus 249 yl~g~~~~~ea~~~~~~ 265 (308)
T COG0324 249 YLDGGISLEEAIERIKT 265 (308)
T ss_pred HHHCCCCHHHHHHHHHH
T ss_conf 98287779999999999
No 448
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=89.70 E-value=0.13 Score=31.34 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 5111377777655301683688706874148899999999963
Q gi|254781149|r 125 IKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 125 i~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a 167 (266)
.|+|=..|.++=--++||||++|-|+.|-|||||.-.+=.=.-
T Consensus 11 Y~~g~~~LK~inl~i~~GE~~~~IG~SGAGKSTLLR~iNrL~~ 53 (253)
T TIGR02315 11 YPNGKQALKNINLEINPGEFVAVIGPSGAGKSTLLRCINRLVE 53 (253)
T ss_pred ECCCCEEEEEECCEEECCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 1798378853114341651799973788726799987753026
No 449
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=89.70 E-value=0.98 Score=25.35 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=42.5
Q ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 76553016836887068741488999999999630223236411675348999999996
Q gi|254781149|r 134 HLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSN 192 (266)
Q Consensus 134 ~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~ 192 (266)
.++-++.-|.=+.+-|.||+|||.++-.+|...... .....|+-.|...++.-...-.
T Consensus 35 ~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~-~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 35 LALLALLAGGHVLLEGPPGVGKTLLARALARALGLP-FVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHCCHHHHH
T ss_conf 999999859977877989877799999999983898-1899568998888820568887
No 450
>PHA00729 NTP-binding motif containing protein
Probab=89.69 E-value=0.75 Score=26.14 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=23.1
Q ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 53016836887068741488999999999630
Q gi|254781149|r 137 GGVQLRELILIGARPSMGKTTFALSTALHMAM 168 (266)
Q Consensus 137 gG~~~g~LiviaaRP~mGKTa~alnia~~~a~ 168 (266)
+||. -+||=|+.|.|||++|+-++..+..
T Consensus 15 ~GF~---S~iifGkQG~GKTTYAlKV~~~v~~ 43 (228)
T PHA00729 15 NGFV---SAIIFGKQGTGKTTYALKVARDVFW 43 (228)
T ss_pred CCCE---EEEEECCCCCCCEEEHHHHHHHHHH
T ss_conf 7946---9999836778842021999999999
No 451
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=89.69 E-value=0.55 Score=27.10 Aligned_cols=115 Identities=10% Similarity=0.047 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEECCCCCHHHHHHHHHHHHH--CCCCCCCCH-
Q ss_conf 3777776553016836887068741488999999999630223--23641167534899999999630--223234785-
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGH--GVAFFSLEMDREKLGARALSNLL--YPSSSRIPY- 203 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~--~Vl~fSlEMs~~ql~~R~ls~~t--~~~~s~I~~- 203 (266)
=..+.+++.=|++|.|+|..|--+- ..+..+ .++.++- ..++++-.+.-.+-..|++.... +++.-.++.
T Consensus 249 Am~v~N~L~~L~~GsLVITPGDRsD----Iil~~~-~a~~~~~~~agi~ltgg~~~~~~i~~l~~~~~~~~lpil~~~~~ 323 (702)
T PRK05632 249 ARSIPNMLEHLKPGSLVVTPGDRSD----VILAAC-LAAMNGVPIAGLLLTGGYEPDPRIAKLCEGAFETGLPILSVDTN 323 (702)
T ss_pred EEECHHHHHCCCCCCEEECCCCHHH----HHHHHH-HHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 7005555610689957981685789----999999-98416998059996189898789999998642389887995687
Q ss_pred --------HHCCCCCCCHHHHHHHHHHHHHHHHC--------CCEEECCCCCCHHHHHHHHH
Q ss_conf --------55017889989999999999999729--------95474799889899999999
Q gi|254781149|r 204 --------LNLIRGEINQEQYRISQGICEKLQDF--------PLIIDDRPSPGIMEFVHVAN 249 (266)
Q Consensus 204 --------~~l~~g~l~~~e~~~i~~a~~~l~~~--------pl~IdD~~~~ti~~ira~aR 249 (266)
.++ ++++..++.+++..+.+-+.+. .+...-+..+|..-.+-..-
T Consensus 324 t~~ta~~l~~~-~~~i~~~~~~ki~~~~~~~~~~vd~~~l~~~~~~~~~~~~tP~~F~~~L~ 384 (702)
T PRK05632 324 TYQTALRLQSF-NLEVPVDDHERIETVLELVASHVDTDWLESRLATPRSRRLSPPAFRYQLT 384 (702)
T ss_pred HHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 69999999745-78789898999999999999737999999986577888859099999999
No 452
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=89.64 E-value=0.97 Score=25.35 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=64.5
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CC----------CEE-EEC-----CCCCHHHHH--------
Q ss_conf 301683688706874148899999999963-02------23----------236-411-----675348999--------
Q gi|254781149|r 138 GVQLRELILIGARPSMGKTTFALSTALHMA-MS------GH----------GVA-FFS-----LEMDREKLG-------- 186 (266)
Q Consensus 138 G~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~----------~Vl-~fS-----lEMs~~ql~-------- 186 (266)
-+++|+.+.|.|.-|.|||++.--++--.. .+ |+ ++. +|. -.|+..+-.
T Consensus 21 ~i~~GE~v~iiG~nGaGKSTLl~~i~Gll~p~sG~I~i~G~~~~~~~~~~r~i~~v~Q~~~l~~~ltv~eni~~~~~~~~ 100 (233)
T PRK10771 21 TVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLLINGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL 100 (233)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 98899899999999981999999996599998559999999988799888887999057766889909999987862267
Q ss_pred -------HHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHHHH
Q ss_conf -------99999630223234785-550178899899999999999997299547479988989-----99999999999
Q gi|254781149|r 187 -------ARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGLRN 253 (266)
Q Consensus 187 -------~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~k~ 253 (266)
.|+-..+.. -++.. .+-.-++|+..+.+++.=|..-+.+-++.+-|.|.-.++ +|....+++.+
T Consensus 101 ~~~~~~~~~~~~~l~~---~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~P~vLllDEPts~LD~~~~~~i~~ll~~l~~ 177 (233)
T PRK10771 101 KLNAAQREKLHAIARQ---MGIENLLARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQ 177 (233)
T ss_pred CCCHHHHHHHHHHHHH---CCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8768899999999987---7996686089455999999999999998559999999287755799999999999999998
Q ss_pred H
Q ss_conf 9
Q gi|254781149|r 254 K 254 (266)
Q Consensus 254 k 254 (266)
+
T Consensus 178 ~ 178 (233)
T PRK10771 178 Q 178 (233)
T ss_pred H
T ss_conf 3
No 453
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.60 E-value=0.63 Score=26.65 Aligned_cols=86 Identities=14% Similarity=0.210 Sum_probs=53.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCH----HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 1683688706874148899999999963022323641167534----899999999630223234785550178899899
Q gi|254781149|r 140 QLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDR----EKLGARALSNLLYPSSSRIPYLNLIRGEINQEQ 215 (266)
Q Consensus 140 ~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~----~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e 215 (266)
..|-.|.+-|-.|+|||+..--+|.....+|+.|++.+..-=+ +|| +..+... +||... + -+..+
T Consensus 204 ~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQL--k~~g~rl-----gVpV~~---~-~dpa~ 272 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQF--QGYADKL-----DVELIV---A-TSPAE 272 (407)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH--HHHHHHH-----CCEEEE---E-CCHHH
T ss_conf 36908999899989789999999999997799179997066778899999--9999997-----964998---1-88899
Q ss_pred HHHHHHHHHHHHH---CCCEEECCCCC
Q ss_conf 9999999999972---99547479988
Q gi|254781149|r 216 YRISQGICEKLQD---FPLIIDDRPSP 239 (266)
Q Consensus 216 ~~~i~~a~~~l~~---~pl~IdD~~~~ 239 (266)
+. .++..+.. ..+-|-||++-
T Consensus 273 l~---~av~~~a~~~~~DvVIIDTAGR 296 (407)
T PRK12726 273 LE---EAVQYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HH---HHHHHHHHCCCCCEEEEECCCC
T ss_conf 99---9999998628999899969998
No 454
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=89.60 E-value=1.8 Score=23.49 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=19.6
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 01683688706874148899999999
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTAL 164 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~ 164 (266)
++.|==++|+|||-+|||++.-.++.
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~ 239 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLG 239 (454)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 64586499987998867999998866
No 455
>PTZ00301 uridine kinase; Provisional
Probab=89.60 E-value=0.62 Score=26.70 Aligned_cols=108 Identities=11% Similarity=0.146 Sum_probs=55.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHC-C-CCEEEECCCC--------C---------------HHHHHHHHHHHH-H
Q ss_conf 68368870687414889999999996302-2-3236411675--------3---------------489999999963-0
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMS-G-HGVAFFSLEM--------D---------------REKLGARALSNL-L 194 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~-g-~~Vl~fSlEM--------s---------------~~ql~~R~ls~~-t 194 (266)
|--+|-|||-.|.|||+|+..++...... | ..|.++|+.- + .-+++..-+..+ .
T Consensus 2 ~~~iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~d~~~~~~~~~~~~NfDhP~a~D~dLl~~~L~~Lk~ 81 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKS 81 (210)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 98899996887678999999999998761499807998367667787658865627889998230369999999999976
Q ss_pred CCCCCCCCHHHCCCCCCCHHH--------------HHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 223234785550178899899--------------9999999999972995474799889899999999999994
Q gi|254781149|r 195 YPSSSRIPYLNLIRGEINQEQ--------------YRISQGICEKLQDFPLIIDDRPSPGIMEFVHVANGLRNKH 255 (266)
Q Consensus 195 ~~~~s~I~~~~l~~g~l~~~e--------------~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k~k~ 255 (266)
| ..-.+|..++.++.-.++. +--....+.++-++.+|||-.+.+ .-+||++|..
T Consensus 82 G-k~I~~P~Ydf~~h~R~~~~~~i~p~~vIIvEGi~~l~~~~lr~l~DlkIFvd~~~di------rl~RRi~RDv 149 (210)
T PTZ00301 82 G-KTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDI------CLIRRAKRDM 149 (210)
T ss_pred C-CCEECCCCCCCCCCCCCCEEEECCCCEEEEEEEHHCCCHHHHHHHCEEEEECCCHHH------HHHHHHHHHH
T ss_conf 9-963446655567766797089668856999710430789899774245773487237------8899888778
No 456
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=89.53 E-value=1.8 Score=23.58 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=60.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCC----CCCHHHHHHH
Q ss_conf 688706874148899999999963022323641167534899999999630223234785550178----8998999999
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRG----EINQEQYRIS 219 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g----~l~~~e~~~i 219 (266)
++||.|--|.|||+|..++..+ ..|+.+.+.-=|+..-.+=..+++.. ..+...+..| .+..+-...+
T Consensus 2 v~iitGFLGaGKTTll~~lL~~--~~~~~~avIvNEfG~~~ID~~ll~~~------~~~v~el~~GCiCCs~~~dl~~~l 73 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE--QHGRKIAVIENEFGEVGIDNQLVVDT------DEEIIEMNNGCICCTVRGDLIRAL 73 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHHC--CCCCCEEEEEECCCCCCCCHHHHHCC------CCEEEEECCCEEEEECCCHHHHHH
T ss_conf 0899848889999999999847--88997799970765546316676378------824999338714652251589999
Q ss_pred HHHHHHHHHC-----CCEEECCCCCCHHHHHH
Q ss_conf 9999999729-----95474799889899999
Q gi|254781149|r 220 QGICEKLQDF-----PLIIDDRPSPGIMEFVH 246 (266)
Q Consensus 220 ~~a~~~l~~~-----pl~IdD~~~~ti~~ira 246 (266)
.....++... .+.|+-++--....|..
T Consensus 74 ~~l~~~~~~~~~~~d~iiIE~SGla~P~~i~~ 105 (158)
T cd03112 74 LDLLERLDAGKIAFDRIVIETTGLADPGPVAQ 105 (158)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCHHHHH
T ss_conf 99999765157887889996368788289999
No 457
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=89.41 E-value=1.8 Score=23.42 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 8998999999999999972995474799889
Q gi|254781149|r 210 EINQEQYRISQGICEKLQDFPLIIDDRPSPG 240 (266)
Q Consensus 210 ~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~t 240 (266)
.++-.+.+++.=|..-+.+-++.|-|.|..-
T Consensus 138 ~lSgG~kqrl~iA~aL~~~P~lliLDEPT~G 168 (306)
T PRK13536 138 DLSGGMKRRLTLARALINDPQLLILDEPTTG 168 (306)
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 7899899999999999559989997587567
No 458
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=89.37 E-value=1.9 Score=23.37 Aligned_cols=113 Identities=15% Similarity=0.057 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC-----------CEEEE------CCCCCHHH
Q ss_conf 3777776553016836887068741488999999999630-------223-----------23641------16753489
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH-----------GVAFF------SLEMDREK 184 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~-----------~Vl~f------SlEMs~~q 184 (266)
.+.||++.--+.+|+.+.|.|.-|.|||++.--++--..- .|+ .+.|. --+|+..|
T Consensus 15 ~~aL~~is~~i~~Gei~~llG~NGaGKSTLl~~i~Gl~~p~~G~I~i~G~~i~~~~~~~~~~ig~v~q~~~l~~~ltv~e 94 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 08984408898499599999899973999999996698788997799999776588988605699923565687887999
Q ss_pred HHHHHHHHHHCCCCC-----------CCCHHH---CCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 999999963022323-----------478555---0178899899999999999997299547479988989
Q gi|254781149|r 185 LGARALSNLLYPSSS-----------RIPYLN---LIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 185 l~~R~ls~~t~~~~s-----------~I~~~~---l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
... +.+.+-+.+.. .+.... -+-+.|+..+.+++.=|..-+.+-++.|-|.|...++
T Consensus 95 ~l~-~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~P~lliLDEPt~gLD 165 (220)
T cd03263 95 HLR-FYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165 (220)
T ss_pred HHH-HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 999-98975699989999999999987696777507576789999999999999956999999958876889
No 459
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=89.34 E-value=0.87 Score=25.69 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=60.8
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC--------------------------CC----------E
Q ss_conf 7777655301683688706874148899999999963-022--------------------------32----------3
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG--------------------------HG----------V 173 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g--------------------------~~----------V 173 (266)
.+-.+.--+.||+++.|.|+.|.|||++..-++--.. .+| +| +
T Consensus 336 ~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi 415 (559)
T COG4988 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI 415 (559)
T ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHEEEECCCCCCCCCCHHHHH
T ss_conf 56671067548967999889999789999998475777784488899310006877888672462799840564188777
Q ss_pred EEECCCCCHHHHHHHHHH----HHHCCCCCCCCHHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 641167534899999999----630223234785550178-899899999999999997299547479988989
Q gi|254781149|r 174 AFFSLEMDREKLGARALS----NLLYPSSSRIPYLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 174 l~fSlEMs~~ql~~R~ls----~~t~~~~s~I~~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
.+.-..-+.+|+.+=+-. ..... -.+++..--.+| .++-.|..|+.=|-.-+++.++++-|.|.-+++
T Consensus 416 ~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD 488 (559)
T COG4988 416 LLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLD 488 (559)
T ss_pred HCCCCCCCHHHHHHHHHHHCHHHHHCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 316876789999999998257876167-7764330215888778999999999998558888898548756798
No 460
>PRK07261 topology modulation protein; Provisional
Probab=89.34 E-value=0.51 Score=27.32 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=19.6
Q ss_pred EEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 88706874148899999999963
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a 167 (266)
|.|-|.||.|||+||-.++....
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ 25 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYN 25 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999868999999999879
No 461
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=89.30 E-value=1.9 Score=23.34 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=74.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC----------------CE-EEE----------
Q ss_conf 77776553016836887068741488999999999630-------223----------------23-641----------
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH----------------GV-AFF---------- 176 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~----------------~V-l~f---------- 176 (266)
.+|++---+.+|++++|-|..|+|||++.--++.-.-- .|+ .+ .+|
T Consensus 43 Av~dVsl~I~~GEi~~ivG~SGsGKSTLlr~i~gL~~Pt~G~I~i~G~di~~~~~~~l~~~rrr~igmVFQ~~aL~P~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 89740768879999999999984699999999759998981899999999989978987651465599957974143888
Q ss_pred -------CC---CCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH----
Q ss_conf -------16---7534899999999630223234785550178899899999999999997299547479988989----
Q gi|254781149|r 177 -------SL---EMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM---- 242 (266)
Q Consensus 177 -------Sl---EMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~---- 242 (266)
.+ -++.++...|....+..+..... .+-+-.+|+-.+..|+.-|-.-..+-++.+-|.|--.+.
T Consensus 123 V~eNi~~~l~~~~~~~~e~~~ra~e~L~~VgL~~~--~~~yP~eLSGGqqQRVaiARALa~~P~iLL~DEP~SALDp~~r 200 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENY--AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH--HCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 88878789998499989999999999997499024--2189344899999999999998629999997087654598999
Q ss_pred -HHHHHHHHHHHHHH
Q ss_conf -99999999999947
Q gi|254781149|r 243 -EFVHVANGLRNKHT 256 (266)
Q Consensus 243 -~ira~aR~~k~k~~ 256 (266)
+++...++++++++
T Consensus 201 ~~i~~~l~~L~~~~~ 215 (400)
T PRK10070 201 TEMQDELVKLQAKHQ 215 (400)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999859
No 462
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.23 E-value=0.92 Score=25.53 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH-HHHHHH-----HCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 5111377777655301683688706874148899999-999963-----02232364116753489999999963
Q gi|254781149|r 125 IKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALS-TALHMA-----MSGHGVAFFSLEMDREKLGARALSNL 193 (266)
Q Consensus 125 i~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~aln-ia~~~a-----~~g~~Vl~fSlEMs~~ql~~R~ls~~ 193 (266)
+.|==++=|+++. +.++-..||-|-||.|||+.||+ +|+=.. .++++|++|+--=.--+-..|.|-.+
T Consensus 210 V~TIQkEQneIIR-~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeL 283 (747)
T COG3973 210 VETIQKEQNEIIR-FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPEL 283 (747)
T ss_pred HHHHHHHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHCHHH
T ss_conf 9986176777875-5578748995588887135889999999853566246686599828389999998755441
No 463
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.19 E-value=1.4 Score=24.31 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=53.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCC---------------------CCEEEECCCCCHH-----HHHHHHHHHHHCCC
Q ss_conf 688706874148899999999963022---------------------3236411675348-----99999999630223
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSG---------------------HGVAFFSLEMDRE-----KLGARALSNLLYPS 197 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g---------------------~~Vl~fSlEMs~~-----ql~~R~ls~~t~~~ 197 (266)
-+++.|.||.|||++|..+|....-.+ ..|+.+.-+-... +....+....+..+
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~ 105 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESP 105 (325)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 10037999997899999999996586643345520022444320256886599773213333006999999998604465
Q ss_pred C-CCCCHHHCCC-CCCCHHHHHHHHHHHHHH-HHCC-CEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 2-3478555017-889989999999999999-7299-547479988989999999999999
Q gi|254781149|r 198 S-SRIPYLNLIR-GEINQEQYRISQGICEKL-QDFP-LIIDDRPSPGIMEFVHVANGLRNK 254 (266)
Q Consensus 198 ~-s~I~~~~l~~-g~l~~~e~~~i~~a~~~l-~~~p-l~IdD~~~~ti~~ira~aR~~k~k 254 (266)
. ++...--+.. ..++.+--..+.....+= .+.+ |.+...|+--+..|+|+|+.+.-+
T Consensus 106 ~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~ 166 (325)
T COG0470 106 LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFK 166 (325)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCHHHCHHHHHHHEEEEECC
T ss_conf 6677269997320326988887675433248887169997498555647877560788767
No 464
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=89.18 E-value=0.39 Score=28.16 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=21.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 6887068741488999999999630
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAM 168 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~ 168 (266)
.|.|||-+|+|||++|..+|...-.
T Consensus 94 iILigGtsGvGKSTlA~~LA~rLgI 118 (306)
T PRK04220 94 IILIGGASGVGTSTIAFELASRLGI 118 (306)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9998589988789999999997098
No 465
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=89.13 E-value=0.2 Score=30.21 Aligned_cols=26 Identities=38% Similarity=0.509 Sum_probs=19.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 68870687414889999999996302
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMS 169 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~ 169 (266)
.|+|+|.||.|||+.|--+|.+....
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHCCC
T ss_conf 79961799997027999999982971
No 466
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=89.04 E-value=2 Score=23.22 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC------CC------------EEEE------CCCCCHH
Q ss_conf 377777655301683688706874148899999999963-022------32------------3641------1675348
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG------HG------------VAFF------SLEMDRE 183 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g------~~------------Vl~f------SlEMs~~ 183 (266)
.+.||++---+++|+.+.|-|.-|.|||++.-.++--.. .+| .+ +.|+ ...|+..
T Consensus 15 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~g~v~Q~~~l~~~~tv~ 94 (257)
T PRK13548 15 KTVLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELPPSSGEVRLFGRPLADWSPAELARRRAVLPQHSSLSFPFTVE 94 (257)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEECCCCCHHHHHHHEEEECCCCCCCCCCCHH
T ss_conf 99880337898699899999999987999999985675778756999365767589999975465861236678998399
Q ss_pred HHHH---------------HHHHHHHCCCCCCCCHHHCCC---CCCCHHHHHHHHHHHHHH------HHCCCEEECCCCC
Q ss_conf 9999---------------999963022323478555017---889989999999999999------7299547479988
Q gi|254781149|r 184 KLGA---------------RALSNLLYPSSSRIPYLNLIR---GEINQEQYRISQGICEKL------QDFPLIIDDRPSP 239 (266)
Q Consensus 184 ql~~---------------R~ls~~t~~~~s~I~~~~l~~---g~l~~~e~~~i~~a~~~l------~~~pl~IdD~~~~ 239 (266)
|... +.-..+ ..+....+.. +.|+..+++++.=|..-+ .+-++.+-|.|.-
T Consensus 95 e~v~~g~~~~~~~~~~~~~~~~~~l-----~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~q~~~~~~~P~lLlLDEPts 169 (257)
T PRK13548 95 EVVAMGRYPHTLSQKEDDQLVAAAL-----AQVDLAHLAGRSYPTLSGGEQQRVQLARVLAQLWEPGGGPRWLLLDEPTS 169 (257)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH-----HHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
T ss_conf 9999778765899899999999999-----87699024169816699999999999999962001047998899889876
Q ss_pred CHH
Q ss_conf 989
Q gi|254781149|r 240 GIM 242 (266)
Q Consensus 240 ti~ 242 (266)
.++
T Consensus 170 gLD 172 (257)
T PRK13548 170 ALD 172 (257)
T ss_pred CCC
T ss_conf 689
No 467
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=89.04 E-value=2 Score=23.21 Aligned_cols=126 Identities=16% Similarity=0.101 Sum_probs=75.5
Q ss_pred CCCCHHH----HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C-----C--CCEEEECCCCCHHH----HHH
Q ss_conf 8511137----77776553016836887068741488999999999630-2-----2--32364116753489----999
Q gi|254781149|r 124 DIKWGLQ----SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-S-----G--HGVAFFSLEMDREK----LGA 187 (266)
Q Consensus 124 Gi~TG~~----~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~-----g--~~Vl~fSlEMs~~q----l~~ 187 (266)
++.-+|. -++++.-.+.+|+-|.|-|.-|.|||+|.--++-.... + | ..+.||.-+.+.-. +.+
T Consensus 326 ~~~~~y~~~~~l~~~~s~~i~~gdrIaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d 405 (530)
T COG0488 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLE 405 (530)
T ss_pred CCCCCCCCCCEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEEEEEEEHHHCCCCCCHHH
T ss_conf 35224689844663726776589889998999877899999985213567725995796789998700310276677999
Q ss_pred HHHHHH---------HCCCCCCCCHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCEEECCCC--CCHHHHHHHHH
Q ss_conf 999963---------02232347855501--7889989999999999999729954747998--89899999999
Q gi|254781149|r 188 RALSNL---------LYPSSSRIPYLNLI--RGEINQEQYRISQGICEKLQDFPLIIDDRPS--PGIMEFVHVAN 249 (266)
Q Consensus 188 R~ls~~---------t~~~~s~I~~~~l~--~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~--~ti~~ira~aR 249 (266)
-+-... +.+..-..+..... -+.||..|..|+.=|.--+.+.|+.|=|.|. +.+.-+.+-..
T Consensus 406 ~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLlLDEPTNhLDi~s~eaLe~ 480 (530)
T COG0488 406 ELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEE 480 (530)
T ss_pred HHHHHCCCCCHHHHHHHHHHCCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 998646543289999999984998679639522258779999999998566997899728987679889999999
No 468
>PRK13342 recombination factor protein RarA; Reviewed
Probab=89.03 E-value=0.58 Score=26.92 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=6.9
Q ss_pred HHHHHCCCCEEEEEC
Q ss_conf 655301683688706
Q gi|254781149|r 135 LMGGVQLRELILIGA 149 (266)
Q Consensus 135 ~~gG~~~g~Liviaa 149 (266)
++..+..|.+++|||
T Consensus 112 LLp~vE~g~iiLIgA 126 (417)
T PRK13342 112 LLPHVEDGTITLIGA 126 (417)
T ss_pred HHHHHHCCCEEEEEE
T ss_conf 987511265699974
No 469
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=89.03 E-value=0.71 Score=26.33 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=31.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHH
Q ss_conf 36887068741488999999999630223236411675348
Q gi|254781149|r 143 ELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDRE 183 (266)
Q Consensus 143 ~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ 183 (266)
..+=|-|-||.|||+|.--+..+....|+.|.+.+..=|..
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 37873179988668899999999997796789999889999
No 470
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=88.89 E-value=0.47 Score=27.58 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=29.4
Q ss_pred EEEEECCCCHHHHHHHHHH-HHHHHHCCCCEEEECCC-CCHHHH
Q ss_conf 6887068741488999999-99963022323641167-534899
Q gi|254781149|r 144 LILIGARPSMGKTTFALST-ALHMAMSGHGVAFFSLE-MDREKL 185 (266)
Q Consensus 144 LiviaaRP~mGKTa~alni-a~~~a~~g~~Vl~fSlE-Ms~~ql 185 (266)
++++-|.||.|||..|... ...+.++|.+|. ..+. +.-+.+
T Consensus 2 I~litG~pGsGKS~~aV~~~i~~al~~GR~V~-tNI~gL~~~~~ 44 (183)
T pfam05707 2 IYLITGKPGSGKTLEAVSYHILPALKKGRKVI-TNIDGLNLERF 44 (183)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCEEE-ECCCCCCCHHC
T ss_conf 79993599996229999999999987899899-87865352210
No 471
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.88 E-value=1.1 Score=24.98 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 5111377777655301683688706874148899999999
Q gi|254781149|r 125 IKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTAL 164 (266)
Q Consensus 125 i~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~ 164 (266)
.|.|-+.|+++---+.+||++.|-|+.|.|||++.-.+..
T Consensus 13 yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 13 YPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 4799566635767757986899987888868999999866
No 472
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.88 E-value=0.9 Score=25.60 Aligned_cols=112 Identities=19% Similarity=0.255 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-C--------------------------CCEEEEC----
Q ss_conf 37777765530168368870687414889999999996302-2--------------------------3236411----
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMS-G--------------------------HGVAFFS---- 177 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~-g--------------------------~~Vl~fS---- 177 (266)
++-++++--....|+++++.|+.|.|||++.-.+--|-... | +++.|.|
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 55340415776375079966898876889999998514788763899727611014316818888988862688988888
Q ss_pred -------C----------CCCHHHHHHHHHHHHHCCCCCCCC--HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf -------6----------753489999999963022323478--555017889989999999999999729954747998
Q gi|254781149|r 178 -------L----------EMDREKLGARALSNLLYPSSSRIP--YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPS 238 (266)
Q Consensus 178 -------l----------EMs~~ql~~R~ls~~t~~~~s~I~--~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~ 238 (266)
| -++.+....|.-.-++. =++| .+.+.-+.++..|..+++-|-+-+.++||..-|.|.
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~r---LnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPT 180 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTR---LNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPT 180 (235)
T ss_pred HCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCHHHHCCCCCCCCCCHHEEHHHHHHHHCCCCEEEECCCC
T ss_conf 61673067887768988299878999999999987---289878853798654773010101555542047157754874
Q ss_pred CCHHH
Q ss_conf 89899
Q gi|254781149|r 239 PGIME 243 (266)
Q Consensus 239 ~ti~~ 243 (266)
-+++.
T Consensus 181 asLDa 185 (235)
T COG4778 181 ASLDA 185 (235)
T ss_pred CCCCC
T ss_conf 21123
No 473
>TIGR02545 ATP_syn_fliI flagellar protein export ATPase FliI; InterPro: IPR013379 FliI proteins are involved in bacterial flagellum systems, acting to drive protein export for flagellar biosynthesis. The most closely related proteins are the YscN proteins of bacterial type III secretion systems.; GO: 0016887 ATPase activity, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=88.86 E-value=0.31 Score=28.80 Aligned_cols=96 Identities=13% Similarity=0.055 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------------------------C--CCCEEEE
Q ss_conf 851113777776553016836887068741488999999999630-------------------------2--2323641
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------------------------S--GHGVAFF 176 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------------------------~--g~~Vl~f 176 (266)
-++||++.+|-++. ..+||=+=|=|=.|+|||+|.--||.+..- . .++|++.
T Consensus 141 ~l~tGVRaId~lLT-~GrGQR~GIFAGSGVGKSTLLGMiAr~t~ADV~VIALIGERGREV~EFiE~~LG~eGl~kSVVVV 219 (439)
T TIGR02545 141 VLDTGVRAIDALLT-IGRGQRLGIFAGSGVGKSTLLGMIARYTEADVNVIALIGERGREVKEFIEDDLGEEGLKKSVVVV 219 (439)
T ss_pred CCCCHHHHHHCCCC-CCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCEEEEE
T ss_conf 11212310111036-55641026633774447889888750665887899844465664313554303511025407998
Q ss_pred -CCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC-CC---CCHHHHHHHHHHHHHHH
Q ss_conf -16753489999999963022323478555017-88---99899999999999997
Q gi|254781149|r 177 -SLEMDREKLGARALSNLLYPSSSRIPYLNLIR-GE---INQEQYRISQGICEKLQ 227 (266)
Q Consensus 177 -SlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~-g~---l~~~e~~~i~~a~~~l~ 227 (266)
+=++|. .+|+=|..+.... ..+||. |+ |-=+-..|+..|..++.
T Consensus 220 ATSD~sp---l~R~~aA~~A~~i----AEYFRDqGk~VLL~~DSlTRFAmAqREig 268 (439)
T TIGR02545 220 ATSDESP---LMRIRAAYAATAI----AEYFRDQGKDVLLLMDSLTRFAMAQREIG 268 (439)
T ss_pred ECCCCCH---HHHHHHHHHHHHH----HHHHHHCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 2799868---9998888999999----99998649834776211788998988999
No 474
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=88.78 E-value=0.5 Score=27.36 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=27.5
Q ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 765530168368870687414889999999996302
Q gi|254781149|r 134 HLMGGVQLRELILIGARPSMGKTTFALSTALHMAMS 169 (266)
Q Consensus 134 ~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~ 169 (266)
+.+.+....-.|.|||-||+|||+.|--+|.+....
T Consensus 81 R~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~ 116 (299)
T COG2074 81 RRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIR 116 (299)
T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
T ss_conf 998615787599961788777257999999972986
No 475
>PRK00254 ski2-like helicase; Provisional
Probab=88.76 E-value=1.3 Score=24.42 Aligned_cols=12 Identities=17% Similarity=-0.042 Sum_probs=4.3
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999997299
Q gi|254781149|r 219 SQGICEKLQDFP 230 (266)
Q Consensus 219 i~~a~~~l~~~p 230 (266)
+..++..+.+..
T Consensus 456 i~~~l~~L~~~~ 467 (717)
T PRK00254 456 IREIVYFLLENE 467 (717)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998677
No 476
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=88.70 E-value=0.32 Score=28.76 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=23.8
Q ss_pred EECCCCHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 7068741488999999999630223236
Q gi|254781149|r 147 IGARPSMGKTTFALSTALHMAMSGHGVA 174 (266)
Q Consensus 147 iaaRP~mGKTa~alnia~~~a~~g~~Vl 174 (266)
|=|.=|+||||.+.|++..+|++|+.|+
T Consensus 5 vYGKGGiGKSTTssNLSvA~A~~GkkVl 32 (275)
T TIGR01281 5 VYGKGGIGKSTTSSNLSVALAKKGKKVL 32 (275)
T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 8638887700467899999984699189
No 477
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=88.64 E-value=0.59 Score=26.85 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=65.8
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEC---CCCCHHHHHHHHHHHHHC------------
Q ss_conf 77776553016836887068741488999999999630223236411---675348999999996302------------
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFS---LEMDREKLGARALSNLLY------------ 195 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fS---lEMs~~ql~~R~ls~~t~------------ 195 (266)
-|+++.--+.+|+++.|-|.-|.|||++.-.++.-..-+.-.|.+.. -+|+..+++.++ |-.-.
T Consensus 17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~~~l~p~~G~V~l~g~~i~~~~~kelAk~i-a~vpQ~~~~~~~~tV~d 95 (258)
T COG1120 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL-AYVPQSPSAPFGLTVYE 95 (258)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHE-EEECCCCCCCCCCEEEE
T ss_conf 87223688659979999899888999999998656788887799999724546988875618-99356788999958736
Q ss_pred -CCCCCCCHH------------------------HCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----
Q ss_conf -232347855------------------------501---78899899999999999997299547479988989-----
Q gi|254781149|r 196 -PSSSRIPYL------------------------NLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM----- 242 (266)
Q Consensus 196 -~~~s~I~~~------------------------~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~----- 242 (266)
+..++.|+. ++. -..|+..|..++.-|..-.++.++-+-|.|.-.++
T Consensus 96 ~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAraLaQ~~~iLLLDEPTs~LDi~~Q~ 175 (258)
T COG1120 96 LVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQI 175 (258)
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH
T ss_conf 17426774655335788768999999999829477766855116866889999999984589978827972003877799
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999994
Q gi|254781149|r 243 EFVHVANGLRNKH 255 (266)
Q Consensus 243 ~ira~aR~~k~k~ 255 (266)
++-.-+|++.+++
T Consensus 176 evl~ll~~l~~~~ 188 (258)
T COG1120 176 EVLELLRDLNREK 188 (258)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999855
No 478
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=88.62 E-value=0.78 Score=26.04 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=31.9
Q ss_pred HHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 77765-5301683688706874148899999999963022
Q gi|254781149|r 132 VDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSG 170 (266)
Q Consensus 132 LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g 170 (266)
|-+.+ .-+++|+++.+-|.=|.|||+|+-.++.+....+
T Consensus 4 lg~~ia~~l~~G~vi~L~G~LGaGKTtfvr~i~~~lg~~~ 43 (123)
T pfam02367 4 LGKRLAQLLKAGDVVLLSGDLGAGKTTFVRGLAKGLGITG 43 (123)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 9999997689997999988877889999999999859988
No 479
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=88.40 E-value=0.31 Score=28.79 Aligned_cols=43 Identities=12% Similarity=0.165 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 85111377777655301683688706874148899999999963
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a 167 (266)
-+.||++.+|-++. +.+|+=+-|=|-+|+|||++.-.++.+..
T Consensus 143 pl~TGIkaID~l~p-igrGQRigIf~gsGvGKS~Ll~~i~r~~~ 185 (440)
T PRK08972 143 PLDVGVRAINAMLT-VGKGQRMGLFAGSGVGKSVLLGMMTRGTT 185 (440)
T ss_pred CCCCCCEEEECCCC-CCCCCEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 10158345634367-12464666315789758999988875147
No 480
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=88.37 E-value=0.86 Score=25.73 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=27.5
Q ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 5301683688706874148899999999963022
Q gi|254781149|r 137 GGVQLRELILIGARPSMGKTTFALSTALHMAMSG 170 (266)
Q Consensus 137 gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g 170 (266)
..--|--++.+-|.||+|||++.-++..+-.++.
T Consensus 34 ~~epPP~vVavvGPpgvGKtTLiksLvk~ytk~~ 67 (225)
T cd01882 34 PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQN 67 (225)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 7899996999989899778899999999985443
No 481
>PRK08118 topology modulation protein; Reviewed
Probab=88.32 E-value=0.45 Score=27.70 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=27.7
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEC---CCCCHHHHHHHH
Q ss_conf 88706874148899999999963022--3236411---675348999999
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSG--HGVAFFS---LEMDREKLGARA 189 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g--~~Vl~fS---lEMs~~ql~~R~ 189 (266)
|.|-|.||.|||+||-.++......- .--+|+. -|-+.++...++
T Consensus 4 I~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~l~w~~~w~~~~~~e~~~~~ 53 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQRTVQ 53 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCCEEECCCCCCCCHHHHHHHH
T ss_conf 99988999879999999999889697964434766899468889999999
No 482
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=88.30 E-value=1.5 Score=23.98 Aligned_cols=69 Identities=25% Similarity=0.306 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHH-HHH----CCCCEEEEECCCCHHHHHHHHHHHHH---------HHHCCCCEEEECC---CCCHHH
Q ss_conf 678511137777765-530----16836887068741488999999999---------6302232364116---753489
Q gi|254781149|r 122 NPDIKWGLQSVDHLM-GGV----QLRELILIGARPSMGKTTFALSTALH---------MAMSGHGVAFFSL---EMDREK 184 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~-gG~----~~g~LiviaaRP~mGKTa~alnia~~---------~a~~g~~Vl~fSl---EMs~~q 184 (266)
+.-+.=||..+-+.. .-| .+-.++||+|++|+|||-+...+... .| +++.-+|=+. +.|...
T Consensus 102 v~~l~GGYKayR~~v~~~l~~~~~~~~~~vl~G~TG~GKT~iL~~L~~~G~qviDLEglA-nHRGS~FG~~~~~~QPsQk 180 (311)
T TIGR03167 102 VPRLEGGYKAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANAGAQVLDLEGLA-NHRGSSFGALGLGPQPSQK 180 (311)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHH-HCCCCCCCCCCCCCCCCHH
T ss_conf 431578389999999999971454687699878888778999999997699742589986-3146534688889997899
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781149|r 185 LGARALS 191 (266)
Q Consensus 185 l~~R~ls 191 (266)
-++=.++
T Consensus 181 ~FEn~l~ 187 (311)
T TIGR03167 181 RFENALA 187 (311)
T ss_pred HHHHHHH
T ss_conf 9999999
No 483
>PRK00300 gmk guanylate kinase; Provisional
Probab=88.28 E-value=0.52 Score=27.23 Aligned_cols=74 Identities=23% Similarity=0.286 Sum_probs=49.6
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHH-HHHHHHHHHHHHCCC----EEECCCCCCHHHHH
Q ss_conf 3236411675348999999996302232347855501788998999-999999999972995----47479988989999
Q gi|254781149|r 171 HGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQY-RISQGICEKLQDFPL----IIDDRPSPGIMEFV 245 (266)
Q Consensus 171 ~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~-~~i~~a~~~l~~~pl----~IdD~~~~ti~~ir 245 (266)
.++.+|=.=.|.+.|-.|+.. +|.-++++. .++..|..++...+. .|+|.-.-++.+|.
T Consensus 119 ~~~~IFI~Pps~e~L~~RL~~----------------Rg~es~~~I~~Rl~~A~~El~~~~~fD~vIiNddl~~a~~~l~ 182 (208)
T PRK00300 119 DAVSIFILPPSLEELERRLRG----------------RGTDSEEVIARRLEAAKEEIAHASEYDYVIVNDDLETALEELK 182 (208)
T ss_pred CCEEEEEECCCHHHHHHHHHH----------------CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
T ss_conf 757999828899999999986----------------3899888999999999999988855999998999999999999
Q ss_pred HHH--HHHHHHHHHHHH
Q ss_conf 999--999999479998
Q gi|254781149|r 246 HVA--NGLRNKHTKMVQ 260 (266)
Q Consensus 246 a~a--R~~k~k~~~~~~ 260 (266)
+.. -++++.+++.+.
T Consensus 183 ~ii~~e~~~~~~q~~~~ 199 (208)
T PRK00300 183 AIIRAERLRRDRQKQRH 199 (208)
T ss_pred HHHHHHHCCHHHHHHHH
T ss_conf 99999860268799999
No 484
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=88.27 E-value=1.3 Score=24.59 Aligned_cols=102 Identities=11% Similarity=0.116 Sum_probs=60.3
Q ss_pred CCE-EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHC--------------
Q ss_conf 836-88706874148899999999963022323641167534899999999630223234785550--------------
Q gi|254781149|r 142 REL-ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNL-------------- 206 (266)
Q Consensus 142 g~L-iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l-------------- 206 (266)
++. ++|.|-||.|||-|+..++.+...+|..|.++...=|.+.+...+= -..++.+.|..+.+
T Consensus 473 tN~N~~I~g~SGsGKSf~~q~l~~~~~~~G~~V~IID~G~SY~~lc~~~g--G~yi~~~~i~~NPF~~i~d~~~~~e~i~ 550 (864)
T PRK13721 473 TNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKSLCENMG--GVYLDGETLRFNPFANITDIDQSAERIR 550 (864)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCC--CEEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 87006998289986899999999999857997999969978999999739--9886699654688756666310468999
Q ss_pred --------CCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHH
Q ss_conf --------17889989999999999999729954747998898999999999
Q gi|254781149|r 207 --------IRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFVHVANG 250 (266)
Q Consensus 207 --------~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~ 250 (266)
..+.+++.+...+.+|+... |.......+|.++....+.
T Consensus 551 ~ll~~masp~~~l~~~e~~~l~~Av~~~-----w~~~g~~~~iddv~~~L~~ 597 (864)
T PRK13721 551 DQLSVMASPNGNLDEVHEGLLLQAVRAS-----WLAKKNRARIDDVVDFLKN 597 (864)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHH-----HHHHCCCCCCCHHHHHHHH
T ss_conf 9999983889999979999999999999-----9982898883089999873
No 485
>KOG0951 consensus
Probab=88.23 E-value=0.67 Score=26.51 Aligned_cols=33 Identities=27% Similarity=0.210 Sum_probs=26.0
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 016836887068741488999999999630223
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMAMSGH 171 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~ 171 (266)
+...+=+.+-|.+|.|||-.|+--+++....+.
T Consensus 322 l~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~ 354 (1674)
T KOG0951 322 LRGDENMLLCAPTGAGKTNVAVLTILQELGNHL 354 (1674)
T ss_pred HCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 557673787426788823799999999985354
No 486
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=88.23 E-value=2.2 Score=22.86 Aligned_cols=90 Identities=22% Similarity=0.210 Sum_probs=61.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH--HHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 8368870687414889999999996302232364116753489999--99996302232347855501788998999999
Q gi|254781149|r 142 RELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGA--RALSNLLYPSSSRIPYLNLIRGEINQEQYRIS 219 (266)
Q Consensus 142 g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~--R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i 219 (266)
-..|.+.|--|.|||+.+--+|...-++|+.|++.+..--+-.-.+ +.++.. .+||...-. -+.+-...+
T Consensus 97 P~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~-----~~v~~~~~~---~~~dp~~i~ 168 (433)
T PRK00771 97 PQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEK-----INVPFYGDP---KEKDAVKIV 168 (433)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH-----CCCCCCCCC---CCCCHHHHH
T ss_conf 858999737889789999999999997799467850678836899999999986-----388731788---999999999
Q ss_pred HHHHHHHHHCCCEEECCCCC
Q ss_conf 99999997299547479988
Q gi|254781149|r 220 QGICEKLQDFPLIIDDRPSP 239 (266)
Q Consensus 220 ~~a~~~l~~~pl~IdD~~~~ 239 (266)
..+.....+..+-|-||++-
T Consensus 169 ~~a~~~~k~~DvviiDTAGR 188 (433)
T PRK00771 169 KEGLEKLKKVDVIIVDTAGR 188 (433)
T ss_pred HHHHHHHCCCCEEEEECCCC
T ss_conf 99999845698899977652
No 487
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=88.18 E-value=0.63 Score=26.70 Aligned_cols=115 Identities=11% Similarity=0.114 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-HHCC-----------------------CCEEE-----
Q ss_conf 511137777765530168368870687414889999999996-3022-----------------------32364-----
Q gi|254781149|r 125 IKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM-AMSG-----------------------HGVAF----- 175 (266)
Q Consensus 125 i~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~-a~~g-----------------------~~Vl~----- 175 (266)
.+.|.+.|+++.--..+|+++.+.|..|.|||+|.--|..-. ..+| ..|.|
T Consensus 11 Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rL 90 (223)
T COG2884 11 YPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRL 90 (223)
T ss_pred CCCCCHHHHCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEECCCCCCCCCCHHHHEEEEEEEECCC
T ss_conf 58973666281576468608998678888789999999841367876599888500325545360554412058641223
Q ss_pred -----------E---CCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf -----------1---16753489999999963022323478555017--8899899999999999997299547479988
Q gi|254781149|r 176 -----------F---SLEMDREKLGARALSNLLYPSSSRIPYLNLIR--GEINQEQYRISQGICEKLQDFPLIIDDRPSP 239 (266)
Q Consensus 176 -----------f---SlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~--g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ 239 (266)
| =..++..++-.|..+.+-.+... ++.+. -.|+..|..++.-|-.-+.+-++-+-|.|.=
T Consensus 91 L~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~----~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTG 166 (223)
T COG2884 91 LPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK----HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTG 166 (223)
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCH----HHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 46530665421201001788789999999999880620----25443960158237889999999816987686048878
Q ss_pred CHHH
Q ss_conf 9899
Q gi|254781149|r 240 GIME 243 (266)
Q Consensus 240 ti~~ 243 (266)
+++-
T Consensus 167 NLDp 170 (223)
T COG2884 167 NLDP 170 (223)
T ss_pred CCCH
T ss_conf 8885
No 488
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=88.07 E-value=0.72 Score=26.28 Aligned_cols=42 Identities=26% Similarity=0.191 Sum_probs=31.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf 887068741488999999999630223236411675348999999
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARA 189 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ 189 (266)
.+|-+.||.|||.+++.++......++.++|+. +...|...+
T Consensus 21 ~~i~~pTGsGKT~~~~~~i~~~~~~~~~~lvlv---p~~~L~~Q~ 62 (103)
T pfam04851 21 GLIVMATGSGKTLTAAKLIARLLKGKKKVLFLV---PRKDLLEQA 62 (103)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE---CCHHHHHHH
T ss_conf 699958999879999999999984699299990---829999999
No 489
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.05 E-value=0.36 Score=28.38 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 785111377777655301683688706874148899999999963
Q gi|254781149|r 123 PDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 123 ~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a 167 (266)
..++||.+.+|-++. ...|+=+=|=|-+|+|||++.--||.+..
T Consensus 145 ~~l~tGVRaIDgllT-~G~GQRiGIFAgsGVGKStLLgMiar~t~ 188 (441)
T COG1157 145 EPLDTGVRAIDGLLT-CGKGQRIGIFAGSGVGKSTLLGMIARNTE 188 (441)
T ss_pred CCCCCCCEEEECCCC-CCCCCEEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 645456144401002-24674678871699868999999962466
No 490
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=88.03 E-value=0.38 Score=28.22 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 85111377777655301683688706874148899999999963
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a 167 (266)
-++||++.+|-++- +.+|+=+-|=|-.|+|||++.-.++.+..
T Consensus 151 pl~TGIraID~l~p-igrGQR~gIfggsGvGKS~Ll~~i~r~~~ 193 (451)
T PRK05688 151 PLDVGIRSINGLLT-VGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred CEECCCEEEECCCC-CCCCCEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 20038468845467-24675642104889868999999988527
No 491
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=87.89 E-value=0.32 Score=28.70 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 85111377777655301683688706874148899999999963
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a 167 (266)
-+.||++.+|-++. +.+|+=+-|=|-+|+|||+++-.|+.+..
T Consensus 138 ~l~TGIraID~l~p-igrGQRigIfggsGvGKs~Ll~~I~r~~~ 180 (434)
T PRK07196 138 PLDVGVNAINGLLT-IGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred CCCCCCEEECCCCC-CCCCCEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 21268624415577-02452421014789978999999989737
No 492
>pfam05625 PAXNEB PAXNEB protein. PAXNEB or PAX6 neighbour is found in several eukaryotic organisms. PAXNED is an RNA polymerase II Elongator protein subunit. It is part of the HAP subcomplex of Elongator, which is a six-subunit component of the RNA polymerase II holoenzyme. The HAP subcomplex is required for Elongator structural integrity and histone acetyltransferase activity. This protein family has a P-loop motif. However its sequence has degraded in many members of the family.
Probab=87.85 E-value=0.73 Score=26.25 Aligned_cols=61 Identities=30% Similarity=0.325 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHH-H--HHCCCCEEEEECCCCHHHHHHHHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHH
Q ss_conf 8511137777765-5--3016836887068741488999999999630----2232364116753489999999
Q gi|254781149|r 124 DIKWGLQSVDHLM-G--GVQLRELILIGARPSMGKTTFALSTALHMAM----SGHGVAFFSLEMDREKLGARAL 190 (266)
Q Consensus 124 Gi~TG~~~LD~~~-g--G~~~g~LiviaaRP~mGKTa~alnia~~~a~----~g~~Vl~fSlEMs~~ql~~R~l 190 (266)
-++||.++||+++ | |+-=|.+++|--. |=|.|+.-+....+. +|++|++.|+ .+++...+=
T Consensus 25 ~tSTG~~sLD~iLgGh~GlPlGs~lLIEEd---~~~~ya~~LlkyF~AEGvv~~h~v~v~s~---p~~~~~~LP 92 (353)
T pfam05625 25 TTSTGTPSLDKILGGHGGLPLGSSLLIEED---GTTDFASVLLRYFAAEGVVQNHHVFVASL---PEQWLRELP 92 (353)
T ss_pred EEECCCCCHHHHHCCCCCCCCCCEEEEEEC---CCCCHHHHHHHHHHHHHHCCCCEEEEECC---CHHHHHHCC
T ss_conf 673287217877178877654537999745---87727999999998720035876999668---899997488
No 493
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=87.65 E-value=1 Score=25.22 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=57.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHH--HCCCCEEEECCCCCH----HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 83688706874148899999999963--022323641167534----899999999630223234785550178899899
Q gi|254781149|r 142 RELILIGARPSMGKTTFALSTALHMA--MSGHGVAFFSLEMDR----EKLGARALSNLLYPSSSRIPYLNLIRGEINQEQ 215 (266)
Q Consensus 142 g~LiviaaRP~mGKTa~alnia~~~a--~~g~~Vl~fSlEMs~----~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e 215 (266)
+-.+.+-|.+|+|||+..--+|-..+ ...+.|.+.|+.==+ +|+ +..+.+ -++|..-.. +.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQL--k~Ya~i-----m~vp~~vv~----~~-- 269 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQL--KTYADI-----MGVPLEVVY----SP-- 269 (407)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH--HHHHHH-----HCCCEEEEC----CH--
T ss_conf 85799989988758879999999997532576068997144115289999--999998-----699559963----99--
Q ss_pred HHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 999999999997299547479988989
Q gi|254781149|r 216 YRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 216 ~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
.-+..++..+.+..+-.-||.+.+--
T Consensus 270 -~el~~ai~~l~~~d~ILVDTaGrs~~ 295 (407)
T COG1419 270 -KELAEAIEALRDCDVILVDTAGRSQY 295 (407)
T ss_pred -HHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf -99999999853188899968998833
No 494
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=87.64 E-value=0.81 Score=25.91 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=12.3
Q ss_pred CEEEECCCCCHHHHHHHHHHHH
Q ss_conf 2364116753489999999963
Q gi|254781149|r 172 GVAFFSLEMDREKLGARALSNL 193 (266)
Q Consensus 172 ~Vl~fSlEMs~~ql~~R~ls~~ 193 (266)
-.++-|-||..-.-++|++..+
T Consensus 142 ~~iVts~e~malyaANnI~~~i 163 (271)
T CHL00072 142 CIIITDNGFDALFAANRIAASV 163 (271)
T ss_pred EEEEECCCHHHHHHHHHHHHHH
T ss_conf 9999567088999999999999
No 495
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.61 E-value=0.63 Score=26.67 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=22.6
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 0168368870687414889999999996302
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMAMS 169 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a~~ 169 (266)
.+.+--++|+|.||.|||+|.-.++...-..
T Consensus 22 v~~~~nIlIsG~tGSGKTTll~al~~~i~~~ 52 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFIPPD 52 (186)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 9859989998999998999999999613345
No 496
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=87.53 E-value=0.46 Score=27.64 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=18.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8870687414889999999996
Q gi|254781149|r 145 ILIGARPSMGKTTFALSTALHM 166 (266)
Q Consensus 145 iviaaRP~mGKTa~alnia~~~ 166 (266)
+++-|.||.|||+++-.+|...
T Consensus 1 iLl~GppGtGKT~~a~~la~~~ 22 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL 22 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
T ss_conf 9878999999999999999997
No 497
>PRK06370 mercuric reductase; Validated
Probab=87.48 E-value=2.5 Score=22.55 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=22.0
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 301683688706874148899999999963022323641
Q gi|254781149|r 138 GVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFF 176 (266)
Q Consensus 138 G~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~f 176 (266)
...|..++||||-+. ++.+|.-.+.-|..|-++
T Consensus 167 ~~~P~~v~ViGgG~i------g~E~A~~~~~~G~~Vtlv 199 (459)
T PRK06370 167 DELPEHLAVIGGGYI------GLEFAQAFRRFGSEVTVV 199 (459)
T ss_pred CCCCCEEEEECCCHH------HHHHHHHHHHHCCEEEEE
T ss_conf 548954999898477------999999999639889999
No 498
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.40 E-value=1.8 Score=23.46 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 11137777765530168368870687414889999999996
Q gi|254781149|r 126 KWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM 166 (266)
Q Consensus 126 ~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~ 166 (266)
|--+|++=+-+ |+.|--=+++-|.||.|||.+|--+|...
T Consensus 151 Pl~~pe~f~~~-Gi~pPkGvLLyGPPGtGKTllAkAvA~e~ 190 (390)
T PRK03992 151 PLKNPELFEEV-GIEPPKGVLLYGPPGTGKTLLAKAVAHET 190 (390)
T ss_pred HHHCHHHHHHC-CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 86598999976-99999727868989997899999999874
No 499
>COG1204 Superfamily II helicase [General function prediction only]
Probab=87.37 E-value=1.4 Score=24.17 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEE
Q ss_conf 6678511137777765-5301683688706874148899999999963022-323641
Q gi|254781149|r 121 ENPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSG-HGVAFF 176 (266)
Q Consensus 121 ~~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g-~~Vl~f 176 (266)
...|+..=|+..-... .|.-.++=++|++.+|+|||..|+-.+.+...+| .+++|.
T Consensus 25 ~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYi 82 (766)
T COG1204 25 KGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYI 82 (766)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 0488477557899874111257986799767888669999999999998559838999
No 500
>PRK09694 hypothetical protein; Provisional
Probab=87.37 E-value=0.99 Score=25.29 Aligned_cols=38 Identities=29% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEECC
Q ss_conf 16836887068741488999999999630223-2364116
Q gi|254781149|r 140 QLRELILIGARPSMGKTTFALSTALHMAMSGH-GVAFFSL 178 (266)
Q Consensus 140 ~~g~LiviaaRP~mGKTa~alnia~~~a~~g~-~Vl~fSl 178 (266)
.|| |+||-|.+|.|||-.||-.|...+..+. .-+||-|
T Consensus 302 ~Pg-L~IiEAptG~GKTEAAL~~A~~L~~~~~~~Gl~faL 340 (878)
T PRK09694 302 APG-LTVIEAPTGSGKTETALAYAWKLIDQQLADSVIFAL 340 (878)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 998-799975899975899999999999734898369977
Done!