HHsearch alignment for GI: 254781149 and conserved domain: pfam00154
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=98.56 E-value=1.4e-06 Score=66.12 Aligned_cols=130 Identities=22% Similarity=0.184 Sum_probs=87.3
Q ss_pred CCCCCCHHHHHHHHH--HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 678511137777765--530168368870687414889999999996302232364116753489999999963022323
Q gi|254781149|r 122 NPDIKWGLQSVDHLM--GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSS 199 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~--gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s 199 (266)
T Consensus 30 ~~~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD~E~a~d~~~a~~l----G---- 101 (322)
T pfam00154 30 VEVISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKL----G---- 101 (322)
T ss_pred CCEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHCCHHHHHHC----C----
T ss_conf 54461580899998758997787089998898777899999999999734993899853660598899980----9----
Q ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHHHHH---CCCEEECCCCCCHH-----------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 47855501788998999999999999972---99547479988989-----------99999999999947999864
Q gi|254781149|r 200 RIPYLNLIRGEINQEQYRISQGICEKLQD---FPLIIDDRPSPGIM-----------EFVHVANGLRNKHTKMVQLY 262 (266)
Q Consensus 200 ~I~~~~l~~g~l~~~e~~~i~~a~~~l~~---~pl~IdD~~~~ti~-----------~ira~aR~~k~k~~~~~~~~ 262 (266)
T Consensus 102 -VD~~~l~~~qp--d~~Eqal~i~~~li~~~~~~liViDSvaal~p~~E~e~~~~d~~~g~~Ar~ms~alRklt~~l 175 (322)
T pfam00154 102 -VDIDNLLVSQP--DTGEQALEIADMLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 175 (322)
T ss_pred -CCHHHEEEECC--CHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf -88025389778--839999999999853799765998253456768887524322321357999999999999997