HHsearch alignment for GI: 254781149 and conserved domain: pfam00772
>pfam00772 DnaB DnaB-like helicase N terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity.
Probab=94.48 E-value=0.048 Score=34.45 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=31.9
Q ss_pred HHHHHHHHCC---CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8989863005---7785689999984067636899999999999
Q gi|254781149|r 4 EIISHFESQT---KISFSTYLNNLLTLASSISSEVINAARRVVQ 44 (266)
Q Consensus 4 ~~~~~le~~~---~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e 44 (266)
T Consensus 61 tl~~~l~~~~~~~~~gg~~yL~~L~~~~~~-~~~~~~Ya~~v~e 103 (103)
T pfam00772 61 TVAEELERKGKLEEVGGIAYLAELADNVPS-AANIEYYARIVKE 103 (103)
T ss_pred HHHHHHHHCCCHHHCCHHHHHHHHHHHCCC-HHHHHHHHHHHCC
T ss_conf 999999767981423759999999982997-9999999998709