HHsearch alignment for GI: 254781149 and conserved domain: pfam02492
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=95.91 E-value=0.059 Score=33.85 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=61.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCC---CHHHHHHHH
Q ss_conf 68870687414889999999996302232364116753489999999963022323478555017889---989999999
Q gi|254781149|r 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEI---NQEQYRISQ 220 (266)
Q Consensus 144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l---~~~e~~~i~ 220 (266)
T Consensus 2 v~iitGFLGsGKTTll~~ll~~-~~~~~~~avI~Ne~g~~~iD~~ll~~------~~~~v~el~~GciCc~~~~d~~~~l 74 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRD-NREGLKIAVIVNDFGETGIDAELLRE------TGAEIVELNNGCICCTIREDLSMVL 74 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHH------CCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 6999348878899999999984-44898479999336530207999870------6961899748866454333699999
Q ss_pred HHHHHHHHC-C--CEEECCCCCCHHHHH
Q ss_conf 999999729-9--547479988989999
Q gi|254781149|r 221 GICEKLQDF-P--LIIDDRPSPGIMEFV 245 (266)
Q Consensus 221 ~a~~~l~~~-p--l~IdD~~~~ti~~ir 245 (266)
T Consensus 75 ~~l~~~~~~~~d~iiIE~sGla~p~~i~ 102 (174)
T pfam02492 75 EALLELKLPRLDLLFIETTGLACPAPVL 102 (174)
T ss_pred HHHHHCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 9998557899999999587667707777