HHsearch alignment for GI: 254781149 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.98 E-value=1.2e-31 Score=240.85 Aligned_cols=128 Identities=40% Similarity=0.601 Sum_probs=122.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 851113777776553016836887068741488999999999630-2232364116753489999999963022323478
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGHGVAFFSLEMDREKLGARALSNLLYPSSSRIP 202 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~ 202 (266)
T Consensus 1 GIpTG~~~lD~~~gGl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~~~~~~~R~~a~~-----~~v~ 75 (186)
T pfam03796 1 GLPTGFTDLDQLTGGLQKGDLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMSAEQLAERLLSSE-----SRIS 75 (186)
T ss_pred CCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH-----HCCC
T ss_conf 93888077886426988881799996799987999999999999970996687547552999999999986-----2676
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 555017889989999999999999729954747998898999999999999947
Q gi|254781149|r 203 YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 203 ~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ira~aR~~k~k~~ 256 (266)
T Consensus 76 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~ 129 (186)
T pfam03796 76 SSKLRSGQLSDEDWERLAEAAGELSEAPLYIDDTPGLSLSELRAQARRLKREHG 129 (186)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 555412512167999999999998539868847999989999999999998559