BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781149|ref|YP_003065562.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] (266 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781149|ref|YP_003065562.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] Length = 266 Score = 553 bits (1424), Expect = e-159, Method: Compositional matrix adjust. Identities = 266/266 (100%), Positives = 266/266 (100%) Query: 1 MNAEIISHFESQTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALAL 60 MNAEIISHFESQTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALAL Sbjct: 1 MNAEIISHFESQTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALAL 60 Query: 61 HTSDPTCNTATLIRKSMQSFEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKKEG 120 HTSDPTCNTATLIRKSMQSFEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKKEG Sbjct: 61 HTSDPTCNTATLIRKSMQSFEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKKEG 120 Query: 121 ENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180 ENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM Sbjct: 121 ENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180 Query: 181 DREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPG 240 DREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPG Sbjct: 181 DREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPG 240 Query: 241 IMEFVHVANGLRNKHTKMVQLYRLLS 266 IMEFVHVANGLRNKHTKMVQLYRLLS Sbjct: 241 IMEFVHVANGLRNKHTKMVQLYRLLS 266 >gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] Length = 504 Score = 75.9 bits (185), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 21/163 (12%) Query: 88 HLTKNQCTGSSCISIANAATTAMKSAEQQ-KKEGENPDIKWGLQSVDHLMGGVQLRELIL 146 HL +N + ++A T A+ A Q ++G + G+Q++D MGG+Q +LI+ Sbjct: 164 HLAENGRYDGGFHTFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLII 223 Query: 147 IGARPSMGKTTFALSTALHMA---------------MSGHGVAFFSLEMDREKLGARALS 191 I RP MGKT+ A + A ++A ++G V F+SLEM E+L R +S Sbjct: 224 IAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIIS 283 Query: 192 NLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIID 234 + +P + RGE+ + Y + +Q PL ID Sbjct: 284 E-----QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYID 321 >gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str. psy62] Length = 479 Score = 35.4 bits (80), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 129 LQSVDHLMGGVQLR-ELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179 + +D + GG +R +IL+G P +GK+T + TA +A H + + S E Sbjct: 76 IDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 >gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62] Length = 363 Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 24/56 (42%) Query: 136 MGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALS 191 +GG ++ I S GKTT AL T +G AF E + + AR L Sbjct: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 >gi|254780274|ref|YP_003064687.1| lysophospholipase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 317 Score = 24.3 bits (51), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Query: 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLL 194 ++L G S+G T ALST L G+A ++L++ EK ++ LL Sbjct: 106 VLLFGY--SLG-TIIALSTLLKYPQKFSGIALWNLDLCFEKYSCMLMTLLL 153 >gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter asiaticus str. psy62] Length = 890 Score = 22.7 bits (47), Expect = 6.2, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 128 GLQSVD-HLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGV 173 G++ D L+GG+ L + + + GKT A+ A+SG GV Sbjct: 83 GMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGV 129 >gi|254780620|ref|YP_003065033.1| iron-responsive transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 144 Score = 22.7 bits (47), Expect = 6.9, Method: Compositional matrix adjust. Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Query: 55 AKALALHTSDP----TCNTATLIRKSMQSFEDIISE 86 A+ A H D +C +++RK++ +F D++++ Sbjct: 89 AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124 >gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 432 Score = 22.3 bits (46), Expect = 9.9, Method: Compositional matrix adjust. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 181 DREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSP 239 ++E L L L+Y +P++++I + +E + + + E Q F L D P Sbjct: 180 EKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYP 238 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.130 0.364 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 148,413 Number of Sequences: 1233 Number of extensions: 5294 Number of successful extensions: 26 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 10 length of query: 266 length of database: 328,796 effective HSP length: 72 effective length of query: 194 effective length of database: 240,020 effective search space: 46563880 effective search space used: 46563880 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 37 (18.9 bits)